RNA–Protein interactions for RNA: ENST00000330503.11

DDX41-201, Transcript of DEAD-box helicase 41, humanhuman

TSL 1 (best)

Gene DDX41, Length 2,137 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-201ENST00000330503 CDC42BPAQ5VT25 1732 aa24.83■■□□□ 1.57
DDX41-201ENST00000330503 ZNF316A6NFI3 1004 aaPredicted RBP24.81■■□□□ 1.56
DDX41-201ENST00000330503 ROCK1Q13464 1354 aa24.8■■□□□ 1.56
DDX41-201ENST00000330503 ZNF777Q9ULD5 760 aaPredicted RBP24.79■■□□□ 1.56
DDX41-201ENST00000330503 UHRF1BP1LA0JNW5 1464 aa24.79■■□□□ 1.56
DDX41-201ENST00000330503 KDM6BO15054 1643 aa24.79■■□□□ 1.56
DDX41-201ENST00000330503 SIN3AQ96ST3 1273 aa24.78■■□□□ 1.56
DDX41-201ENST00000330503 OSCARQ8IYS5 282 aa24.72■■□□□ 1.55
DDX41-201ENST00000330503 KDM5BQ9UGL1 1544 aa24.72■■□□□ 1.55
DDX41-201ENST00000330503 ZCCHC11Q5TAX3 1644 aaKnown RBP24.71■■□□□ 1.55
DDX41-201ENST00000330503 NEUROD1Q13562 356 aa24.7■■□□□ 1.54
DDX41-201ENST00000330503 CDC42BPBQ9Y5S2 1711 aa24.68■■□□□ 1.54
DDX41-201ENST00000330503 CROCC2H7BZ55 1655 aa24.67■■□□□ 1.54
DDX41-201ENST00000330503 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP24.67■■□□□ 1.54
DDX41-201ENST00000330503 NCOA1Q15788 1441 aa24.67■■□□□ 1.54
DDX41-201ENST00000330503 PREX2Q70Z35 1606 aa24.66■■□□□ 1.54
DDX41-201ENST00000330503 ADGRL2O95490 1459 aa24.66■■□□□ 1.54
DDX41-201ENST00000330503 TTC37Q6PGP7 1564 aa24.65■■□□□ 1.54
DDX41-201ENST00000330503 DIEXFQ68CQ4 756 aaKnown RBP24.65■■□□□ 1.54
DDX41-201ENST00000330503 TRIM52Q96A61 297 aa24.65■■□□□ 1.54
DDX41-201ENST00000330503 DENND4BO75064 1496 aaPredicted RBP24.65■■□□□ 1.54
DDX41-201ENST00000330503 ADGBQ8N7X0 1667 aa24.64■■□□□ 1.53
DDX41-201ENST00000330503 KCNH8Q96L42 1107 aa24.64■■□□□ 1.53
DDX41-201ENST00000330503 TIMELESSQ9UNS1 1208 aa24.64■■□□□ 1.53
DDX41-201ENST00000330503 HNRNPMP52272 730 aaKnown RBP eCLIP24.62■■□□□ 1.53
DDX41-201ENST00000330503 SAMD9LQ8IVG5 1584 aa24.62■■□□□ 1.53
DDX41-201ENST00000330503 MBD5Q9P267 1494 aa24.61■■□□□ 1.53
DDX41-201ENST00000330503 MPHOSPH9Q99550 1183 aa24.6■■□□□ 1.53
DDX41-201ENST00000330503 ACIN1Q9UKV3 1341 aaKnown RBP24.6■■□□□ 1.53
DDX41-201ENST00000330503 ARHGEF5Q12774 1597 aa24.59■■□□□ 1.53
DDX41-201ENST00000330503 SHANK2Q9UPX8 1470 aa24.59■■□□□ 1.53
DDX41-201ENST00000330503 ANKRD30AQ9BXX3 1397 aa24.59■■□□□ 1.53
DDX41-201ENST00000330503 C9orf84Q5VXU9 1444 aa24.56■■□□□ 1.52
DDX41-201ENST00000330503 MYO5CQ9NQX4 1742 aa24.55■■□□□ 1.52
DDX41-201ENST00000330503 ARHGAP5Q13017 1502 aa24.55■■□□□ 1.52
DDX41-201ENST00000330503 TSPY4P0CV99 314 aa24.54■■□□□ 1.52
DDX41-201ENST00000330503 TSPY10P0CW01 314 aa24.54■■□□□ 1.52
DDX41-201ENST00000330503 PPP1R15AO75807 674 aaPredicted RBP24.53■■□□□ 1.52
DDX41-201ENST00000330503 PLCH2O75038 1416 aa24.52■■□□□ 1.52
DDX41-201ENST00000330503 RSPH4AQ5TD94 716 aa24.52■■□□□ 1.52
DDX41-201ENST00000330503 CCDC141Q6ZP82 1450 aa24.5■■□□□ 1.51
DDX41-201ENST00000330503 ANKRD50Q9ULJ7 1429 aa24.48■■□□□ 1.51
DDX41-201ENST00000330503 SYCP2Q9BX26 1530 aa24.48■■□□□ 1.51
DDX41-201ENST00000330503 KIAA1107Q9UPP5 1409 aa24.47■■□□□ 1.51
DDX41-201ENST00000330503 FOXD1Q16676 465 aa24.47■■□□□ 1.51
DDX41-201ENST00000330503 PZPP20742 1482 aa24.46■■□□□ 1.51
DDX41-201ENST00000330503 WDR7Q9Y4E6 1490 aa24.46■■□□□ 1.51
DDX41-201ENST00000330503 TONSLQ96HA7 1378 aa24.46■■□□□ 1.51
DDX41-201ENST00000330503 PLEKHH2Q8IVE3 1493 aa24.45■■□□□ 1.5
DDX41-201ENST00000330503 EFCAB2Q5VUJ9 269 aa24.44■■□□□ 1.5
DDX41-201ENST00000330503 SLC4A1APQ9BWU0 796 aaKnown RBP24.44■■□□□ 1.5
DDX41-201ENST00000330503 ARHGEF12Q9NZN5 1544 aa24.44■■□□□ 1.5
DDX41-201ENST00000330503 ANKRD30BQ9BXX2 1392 aa24.44■■□□□ 1.5
DDX41-201ENST00000330503 KIF15Q9NS87 1388 aa24.43■■□□□ 1.5
DDX41-201ENST00000330503 MAST1Q9Y2H9 1570 aa24.41■■□□□ 1.5
DDX41-201ENST00000330503 ASXL2Q76L83 1435 aa24.39■■□□□ 1.5
DDX41-201ENST00000330503 ARAP3Q8WWN8 1544 aa24.37■■□□□ 1.49
DDX41-201ENST00000330503 ABCC1P33527 1531 aa24.35■■□□□ 1.49
DDX41-201ENST00000330503 ABCA9Q8IUA7 1624 aa24.35■■□□□ 1.49
DDX41-201ENST00000330503 NUP155O75694 1391 aa24.33■■□□□ 1.49
DDX41-201ENST00000330503 NPM1P06748 294 aaKnown RBP eCLIP24.32■■□□□ 1.48
DDX41-201ENST00000330503 TRAPPC8Q9Y2L5 1435 aa24.32■■□□□ 1.48
DDX41-201ENST00000330503 KDM5DQ9BY66 1539 aa24.31■■□□□ 1.48
DDX41-201ENST00000330503 PKD2Q13563 968 aa24.31■■□□□ 1.48
DDX41-201ENST00000330503 RPRD2Q5VT52 1461 aaKnown RBP24.31■■□□□ 1.48
DDX41-201ENST00000330503 PLXNC1O60486 1568 aa24.3■■□□□ 1.48
DDX41-201ENST00000330503 L3MBTL2Q969R5 705 aa24.28■■□□□ 1.48
DDX41-201ENST00000330503 MIER1Q8N108 512 aa24.27■■□□□ 1.48
DDX41-201ENST00000330503 FANCAO15360 1455 aa24.25■■□□□ 1.47
DDX41-201ENST00000330503 AFAP1Q8N556 730 aa24.23■■□□□ 1.47
DDX41-201ENST00000330503 DUOX2Q9NRD8 1548 aa24.22■■□□□ 1.47
DDX41-201ENST00000330503 TEX14Q8IWB6 1497 aa24.2■■□□□ 1.46
DDX41-201ENST00000330503 SPAG9O60271 1321 aaKnown RBP24.2■■□□□ 1.46
DDX41-201ENST00000330503 RTEL1-TNFRSF6BF6WH68 1400 aa24.2■■□□□ 1.46
DDX41-201ENST00000330503 UNC13BO14795 1591 aa24.19■■□□□ 1.46
DDX41-201ENST00000330503 FAM135AQ9P2D6 1515 aa24.18■■□□□ 1.46
DDX41-201ENST00000330503 HIRIP3Q9BW71 556 aaPredicted RBP24.17■■□□□ 1.46
DDX41-201ENST00000330503 ERBINQ96RT1 1412 aa24.16■■□□□ 1.46
DDX41-201ENST00000330503 SCAPERQ9BY12 1400 aa24.16■■□□□ 1.46
DDX41-201ENST00000330503 ADGRL1O94910 1474 aa24.15■■□□□ 1.46
DDX41-201ENST00000330503 ZFYVE16Q7Z3T8 1539 aa24.14■■□□□ 1.46
DDX41-201ENST00000330503 NBPF8Q3BBV2 869 aa24.13■■□□□ 1.45
DDX41-201ENST00000330503 CYB5RLQ6IPT4 315 aa24.13■■□□□ 1.45
DDX41-201ENST00000330503 CD109Q6YHK3 1445 aa24.12■■□□□ 1.45
DDX41-201ENST00000330503 GRWD1Q9BQ67 446 aaKnown RBP eCLIP24.12■■□□□ 1.453e-8■■■□□ 16.5
DDX41-201ENST00000330503 RIMBP3CA6NJZ7 1639 aa24.11■■□□□ 1.45
DDX41-201ENST00000330503 RIMBP3BA6NNM3 1639 aa24.11■■□□□ 1.45
DDX41-201ENST00000330503 RIMBP3Q9UFD9 1639 aa24.11■■□□□ 1.45
DDX41-201ENST00000330503 MAGI2Q86UL8 1455 aa24.1■■□□□ 1.45
DDX41-201ENST00000330503 IQGAP3Q86VI3 1631 aa24.09■■□□□ 1.45
DDX41-201ENST00000330503 INO80Q9ULG1 1556 aaPredicted RBP24.09■■□□□ 1.45
DDX41-201ENST00000330503 ATP7AQ04656 1500 aa24.07■■□□□ 1.44
DDX41-201ENST00000330503 DDX10Q13206 875 aaKnown RBP24.04■■□□□ 1.44
DDX41-201ENST00000330503 PLA2R1Q13018 1463 aa24.03■■□□□ 1.44
DDX41-201ENST00000330503 HSPA5P11021 654 aaKnown RBP24.03■■□□□ 1.44
DDX41-201ENST00000330503 CFAP74Q9C0B2 1584 aa24.01■■□□□ 1.43
DDX41-201ENST00000330503 EIF4G2P78344 907 aaKnown RBP eCLIP23.99■■□□□ 1.43
DDX41-201ENST00000330503 ZNF518AQ6AHZ1 1483 aa23.99■■□□□ 1.43
DDX41-201ENST00000330503 DHX29Q7Z478 1369 aaKnown RBP23.98■■□□□ 1.43
DDX41-201ENST00000330503 KIDINS220Q9ULH0 1771 aa23.98■■□□□ 1.43
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms