RNA–Protein interactions for RNA: ENST00000329397.5

PTP4A3-201, Transcript of protein tyrosine phosphatase type IVA, member 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTP4A3, Length 2,785 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTP4A3-201ENST00000329397 NBPF8Q3BBV2 869 aa24.1■■□□□ 1.45
PTP4A3-201ENST00000329397 FAM9BQ8IZU0 186 aa24.1■■□□□ 1.45
PTP4A3-201ENST00000329397 WDR62O43379 1518 aa24.07■■□□□ 1.44
PTP4A3-201ENST00000329397 ADAMTS12P58397 1594 aa24.05■■□□□ 1.44
PTP4A3-201ENST00000329397 CNTLNQ9NXG0 1405 aa24.04■■□□□ 1.44
PTP4A3-201ENST00000329397 SLC4A1APQ9BWU0 796 aaKnown RBP24.03■■□□□ 1.44
PTP4A3-201ENST00000329397 MIA2Q96PC5 1412 aa24.02■■□□□ 1.44
PTP4A3-201ENST00000329397 ZNF608Q9ULD9 1512 aaPredicted RBP24.02■■□□□ 1.44
PTP4A3-201ENST00000329397 CCDC7Q96M83 1385 aa24.02■■□□□ 1.44
PTP4A3-201ENST00000329397 DAPK1P53355 1430 aa24.01■■□□□ 1.43
PTP4A3-201ENST00000329397 PRKRIP1Q9H875 184 aaPredicted RBP24.01■■□□□ 1.43
PTP4A3-201ENST00000329397 MRS2Q9HD23 443 aa24.01■■□□□ 1.43
PTP4A3-201ENST00000329397 AKNAQ7Z591 1439 aa24■■□□□ 1.43
PTP4A3-201ENST00000329397 SENP3-EIF4A1A0A087X0R7 540 aa24■■□□□ 1.43
PTP4A3-201ENST00000329397 POLR3GLQ9BT43 218 aa23.99■■□□□ 1.43
PTP4A3-201ENST00000329397 ANKRD30BQ9BXX2 1392 aa23.99■■□□□ 1.43
PTP4A3-201ENST00000329397 ZNF326Q5BKZ1 582 aaKnown RBP23.99■■□□□ 1.43
PTP4A3-201ENST00000329397 ABCC5O15440 1437 aa23.99■■□□□ 1.43
PTP4A3-201ENST00000329397 NCOA1Q15788 1441 aa23.97■■□□□ 1.43
PTP4A3-201ENST00000329397 ZNF777Q9ULD5 760 aaPredicted RBP23.97■■□□□ 1.43
PTP4A3-201ENST00000329397 KIF7Q2M1P5 1343 aa23.95■■□□□ 1.42
PTP4A3-201ENST00000329397 RPRD2Q5VT52 1461 aaKnown RBP23.94■■□□□ 1.42
PTP4A3-201ENST00000329397 TEX14Q8IWB6 1497 aa23.94■■□□□ 1.42
PTP4A3-201ENST00000329397 NUP153P49790 1475 aaKnown RBP23.93■■□□□ 1.42
PTP4A3-201ENST00000329397 MSH5O43196 834 aa23.91■■□□□ 1.42
PTP4A3-201ENST00000329397 DISP1Q96F81 1524 aa23.91■■□□□ 1.42
PTP4A3-201ENST00000329397 PRG4Q92954 1404 aaPredicted RBP23.9■■□□□ 1.42
PTP4A3-201ENST00000329397 DNMT1P26358 1616 aaKnown RBP23.89■■□□□ 1.42
PTP4A3-201ENST00000329397 KIAA0556O60303 1618 aa23.88■■□□□ 1.41
PTP4A3-201ENST00000329397 MRC2Q9UBG0 1479 aa23.88■■□□□ 1.41
PTP4A3-201ENST00000329397 B4GALNT3Q6L9W6 998 aa23.87■■□□□ 1.41
PTP4A3-201ENST00000329397 CDK11AQ9UQ88 783 aaPredicted RBP23.86■■□□□ 1.41
PTP4A3-201ENST00000329397 ROCK1Q13464 1354 aa23.86■■□□□ 1.41
PTP4A3-201ENST00000329397 CFDP1Q9UEE9 299 aaPredicted RBP23.86■■□□□ 1.41
PTP4A3-201ENST00000329397 FBLN2P98095 1184 aa23.84■■□□□ 1.41
PTP4A3-201ENST00000329397 SPATA31E1Q6ZUB1 1445 aa23.84■■□□□ 1.41
PTP4A3-201ENST00000329397 RAPGEF6Q8TEU7 1601 aa23.82■■□□□ 1.4
PTP4A3-201ENST00000329397 PZPP20742 1482 aa23.82■■□□□ 1.4
PTP4A3-201ENST00000329397 KIAA0586Q9BVV6 1533 aa23.81■■□□□ 1.4
PTP4A3-201ENST00000329397 PLB1Q6P1J6 1458 aa23.81■■□□□ 1.4
PTP4A3-201ENST00000329397 CAMSAP2Q08AD1 1489 aa23.8■■□□□ 1.4
PTP4A3-201ENST00000329397 PKD2Q13563 968 aa23.79■■□□□ 1.4
PTP4A3-201ENST00000329397 ZBED9Q6R2W3 1325 aa23.79■■□□□ 1.4
PTP4A3-201ENST00000329397 PPP4R2Q9NY27 417 aa23.78■■□□□ 1.4
PTP4A3-201ENST00000329397 KIF14Q15058 1648 aa23.77■■□□□ 1.4
PTP4A3-201ENST00000329397 GRIN2AQ12879 1464 aa23.76■■□□□ 1.39
PTP4A3-201ENST00000329397 USP47Q96K76 1375 aa23.74■■□□□ 1.39
PTP4A3-201ENST00000329397 BCORL1Q5H9F3 1711 aa23.73■■□□□ 1.39
PTP4A3-201ENST00000329397 IFT140Q96RY7 1462 aa23.73■■□□□ 1.39
PTP4A3-201ENST00000329397 TROQ12816 1431 aaPredicted RBP23.73■■□□□ 1.39
PTP4A3-201ENST00000329397 GPATCH8Q9UKJ3 1502 aaKnown RBP23.72■■□□□ 1.39
PTP4A3-201ENST00000329397 CHMP7Q8WUX9 453 aaPredicted RBP23.72■■□□□ 1.39
PTP4A3-201ENST00000329397 EIF4G3O43432 1585 aaKnown RBP23.7■■□□□ 1.39
PTP4A3-201ENST00000329397 DHX29Q7Z478 1369 aaKnown RBP23.7■■□□□ 1.38
PTP4A3-201ENST00000329397 KDM2AQ9Y2K7 1162 aa23.7■■□□□ 1.38
PTP4A3-201ENST00000329397 POLR1AO95602 1720 aaPredicted RBP23.69■■□□□ 1.38
PTP4A3-201ENST00000329397 KIAA1107Q9UPP5 1409 aa23.68■■□□□ 1.38
PTP4A3-201ENST00000329397 MBD5Q9P267 1494 aa23.65■■□□□ 1.38
PTP4A3-201ENST00000329397 FANCIQ9NVI1 1328 aa23.64■■□□□ 1.37
PTP4A3-201ENST00000329397 ANKRD50Q9ULJ7 1429 aa23.63■■□□□ 1.37
PTP4A3-201ENST00000329397 CEP170Q5SW79 1584 aa23.63■■□□□ 1.37
PTP4A3-201ENST00000329397 NUP155O75694 1391 aa23.63■■□□□ 1.37
PTP4A3-201ENST00000329397 ADGBQ8N7X0 1667 aa23.63■■□□□ 1.37
PTP4A3-201ENST00000329397 ANKRD30AQ9BXX3 1397 aa23.62■■□□□ 1.37
PTP4A3-201ENST00000329397 ITSN2Q9NZM3 1697 aa23.61■■□□□ 1.37
PTP4A3-201ENST00000329397 ERICH6BQ5W0A0 696 aa23.61■■□□□ 1.37
PTP4A3-201ENST00000329397 CARD11Q9BXL7 1154 aa23.61■■□□□ 1.37
PTP4A3-201ENST00000329397 JPH4Q96JJ6 628 aa23.59■■□□□ 1.37
PTP4A3-201ENST00000329397 KDM5CP41229 1560 aa23.58■■□□□ 1.37
PTP4A3-201ENST00000329397 CROCC2H7BZ55 1655 aa23.58■■□□□ 1.36
PTP4A3-201ENST00000329397 HNRNPMP52272 730 aaKnown RBP eCLIP23.57■■□□□ 1.364e-8■■■■■ 28.3
PTP4A3-201ENST00000329397 ST20-MTHFSA0A0A6YYL1 179 aa23.57■■□□□ 1.36
PTP4A3-201ENST00000329397 TMC1Q8TDI8 760 aa23.56■■□□□ 1.36
PTP4A3-201ENST00000329397 DCAF11Q8TEB1 546 aa23.56■■□□□ 1.36
PTP4A3-201ENST00000329397 ERCC6Q03468 1493 aa23.56■■□□□ 1.36
PTP4A3-201ENST00000329397 PLEKHD1A6NEE1 506 aa23.55■■□□□ 1.36
PTP4A3-201ENST00000329397 ADGRL2O95490 1459 aa23.55■■□□□ 1.36
PTP4A3-201ENST00000329397 SALL2Q9Y467 1007 aaPredicted RBP23.55■■□□□ 1.36
PTP4A3-201ENST00000329397 DAXXQ9UER7 740 aaPredicted RBP23.54■■□□□ 1.36
PTP4A3-201ENST00000329397 NUDCQ9Y266 331 aa23.54■■□□□ 1.36
PTP4A3-201ENST00000329397 C9orf84Q5VXU9 1444 aa23.53■■□□□ 1.36
PTP4A3-201ENST00000329397 SMG6Q86US8 1419 aaKnown RBP23.52■■□□□ 1.36
PTP4A3-201ENST00000329397 PNISRQ8TF01 805 aaKnown RBP23.52■■□□□ 1.36
PTP4A3-201ENST00000329397 CDC42BPAQ5VT25 1732 aa23.52■■□□□ 1.36
PTP4A3-201ENST00000329397 ADCY10Q96PN6 1610 aa23.5■■□□□ 1.35
PTP4A3-201ENST00000329397 TSPY4P0CV99 314 aa23.49■■□□□ 1.35
PTP4A3-201ENST00000329397 TSPY10P0CW01 314 aa23.49■■□□□ 1.35
PTP4A3-201ENST00000329397 SYNJ2O15056 1496 aa23.49■■□□□ 1.35
PTP4A3-201ENST00000329397 CARMIL2Q6F5E8 1435 aa23.49■■□□□ 1.35
PTP4A3-201ENST00000329397 CCDC136Q96JN2 1154 aa23.48■■□□□ 1.35
PTP4A3-201ENST00000329397 RGL3Q3MIN7 710 aa23.47■■□□□ 1.35
PTP4A3-201ENST00000329397 RALGAPBQ86X10 1494 aa23.47■■□□□ 1.35
PTP4A3-201ENST00000329397 MAGI1Q96QZ7 1491 aaPredicted RBP23.47■■□□□ 1.35
PTP4A3-201ENST00000329397 KIF15Q9NS87 1388 aa23.46■■□□□ 1.35
PTP4A3-201ENST00000329397 ATP10BO94823 1461 aa23.46■■□□□ 1.35
PTP4A3-201ENST00000329397 EIF5BO60841 1220 aaKnown RBP23.46■■□□□ 1.35
PTP4A3-201ENST00000329397 ABCC10Q5T3U5 1492 aa23.43■■□□□ 1.34
PTP4A3-201ENST00000329397 UHRF1BP1Q6BDS2 1440 aa23.42■■□□□ 1.34
PTP4A3-201ENST00000329397 ROCK2O75116 1388 aaKnown RBP23.42■■□□□ 1.34
PTP4A3-201ENST00000329397 GRWD1Q9BQ67 446 aaKnown RBP eCLIP23.41■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms