RNA–Protein interactions for RNA: ENST00000328923.7

SHMT2-201, Transcript of serine hydroxymethyltransferase 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHMT2, Length 2,537 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-201ENST00000328923 SNAPC4Q5SXM2 1469 aa16.04■□□□□ 0.16
SHMT2-201ENST00000328923 MAGI1Q96QZ7 1491 aaPredicted RBP16.03■□□□□ 0.16
SHMT2-201ENST00000328923 EFCAB5A4FU69 1503 aa16.03■□□□□ 0.16
SHMT2-201ENST00000328923 TIAM1Q13009 1591 aa16.02■□□□□ 0.15
SHMT2-201ENST00000328923 HSP90AA2PQ14568 343 aaPredicted RBP16.01■□□□□ 0.15
SHMT2-201ENST00000328923 ANP32CO43423 234 aa16■□□□□ 0.15
SHMT2-201ENST00000328923 HNRNPUQ00839 825 aaKnown RBP eCLIP16■□□□□ 0.15
SHMT2-201ENST00000328923 P3H3Q8IVL6 736 aa15.98■□□□□ 0.15
SHMT2-201ENST00000328923 FRAT1Q92837 279 aaPredicted RBP15.98■□□□□ 0.15
SHMT2-201ENST00000328923 FHOD3Q2V2M9 1422 aa15.98■□□□□ 0.15
SHMT2-201ENST00000328923 FBLN2P98095 1184 aa15.97■□□□□ 0.15
SHMT2-201ENST00000328923 PDIA4P13667 645 aaKnown RBP15.97■□□□□ 0.15
SHMT2-201ENST00000328923 BCL11BQ9C0K0 894 aaPredicted RBP15.97■□□□□ 0.15
SHMT2-201ENST00000328923 PCF11O94913 1555 aaKnown RBP15.96■□□□□ 0.15
SHMT2-201ENST00000328923 SYNJ2O15056 1496 aa15.96■□□□□ 0.15
SHMT2-201ENST00000328923 NPM2Q86SE8 214 aaKnown RBP15.95■□□□□ 0.14
SHMT2-201ENST00000328923 GRIN2AQ12879 1464 aa15.94■□□□□ 0.14
SHMT2-201ENST00000328923 RRP9O43818 475 aaKnown RBP15.94■□□□□ 0.14
SHMT2-201ENST00000328923 AEBP2Q6ZN18 517 aaPredicted RBP15.94■□□□□ 0.14
SHMT2-201ENST00000328923 SAMD9Q5K651 1589 aa15.94■□□□□ 0.14
SHMT2-201ENST00000328923 PPM1GO15355 546 aaPredicted RBP15.94■□□□□ 0.14
SHMT2-201ENST00000328923 CYB5RLQ6IPT4 315 aa15.93■□□□□ 0.14
SHMT2-201ENST00000328923 DCAF11Q8TEB1 546 aa15.92■□□□□ 0.14
SHMT2-201ENST00000328923 CFAP43Q8NDM7 1665 aa15.92■□□□□ 0.14
SHMT2-201ENST00000328923 LRRC9Q6ZRR7 1453 aa15.91■□□□□ 0.14
SHMT2-201ENST00000328923 FYCO1Q9BQS8 1478 aa15.91■□□□□ 0.14
SHMT2-201ENST00000328923 CASKIN1Q8WXD9 1431 aa15.9■□□□□ 0.14
SHMT2-201ENST00000328923 FMN1Q68DA7 1419 aa15.89■□□□□ 0.13
SHMT2-201ENST00000328923 RRAGDQ9NQL2 400 aaPredicted RBP15.89■□□□□ 0.13
SHMT2-201ENST00000328923 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP15.88■□□□□ 0.13
SHMT2-201ENST00000328923 SIN3AQ96ST3 1273 aa15.88■□□□□ 0.13
SHMT2-201ENST00000328923 HSP90AA1P07900 732 aaKnown RBP15.87■□□□□ 0.13
SHMT2-201ENST00000328923 CEP170Q5SW79 1584 aa15.86■□□□□ 0.13
SHMT2-201ENST00000328923 HIRIP3Q9BW71 556 aaPredicted RBP15.86■□□□□ 0.13
SHMT2-201ENST00000328923 NUP160Q12769 1436 aa15.86■□□□□ 0.13
SHMT2-201ENST00000328923 IQGAP2Q13576 1575 aa15.86■□□□□ 0.13
SHMT2-201ENST00000328923 NAP1L5Q96NT1 182 aaPredicted RBP15.86■□□□□ 0.13
SHMT2-201ENST00000328923 ATP1B4Q9UN42 357 aaPredicted RBP15.85■□□□□ 0.13
SHMT2-201ENST00000328923 PHLDB1Q86UU1 1377 aa15.84■□□□□ 0.13
SHMT2-201ENST00000328923 CHMP7Q8WUX9 453 aaPredicted RBP15.84■□□□□ 0.13
SHMT2-201ENST00000328923 KIAA0586Q9BVV6 1533 aa15.84■□□□□ 0.13
SHMT2-201ENST00000328923 NFKBIBQ15653 356 aa15.84■□□□□ 0.13
SHMT2-201ENST00000328923 CLASP1Q7Z460 1538 aa15.82■□□□□ 0.12
SHMT2-201ENST00000328923 LRRIQ1Q96JM4 1722 aa15.8■□□□□ 0.12
SHMT2-201ENST00000328923 UGGT2Q9NYU1 1516 aa15.8■□□□□ 0.12
SHMT2-201ENST00000328923 TRHP20396 242 aaPredicted RBP15.79■□□□□ 0.12
SHMT2-201ENST00000328923 PRDM4Q9UKN5 801 aa15.78■□□□□ 0.12
SHMT2-201ENST00000328923 TONSLQ96HA7 1378 aa15.77■□□□□ 0.12
SHMT2-201ENST00000328923 RGS3P49796 1198 aa15.76■□□□□ 0.11
SHMT2-201ENST00000328923 UACAQ9BZF9 1416 aa15.73■□□□□ 0.11
SHMT2-201ENST00000328923 NCOA2Q15596 1464 aa15.73■□□□□ 0.11
SHMT2-201ENST00000328923 KDM5BQ9UGL1 1544 aa15.73■□□□□ 0.11
SHMT2-201ENST00000328923 FAM50AQ14320 339 aaKnown RBP15.71■□□□□ 0.11
SHMT2-201ENST00000328923 PNNQ9H307 717 aaKnown RBP15.71■□□□□ 0.11
SHMT2-201ENST00000328923 DISP1Q96F81 1524 aa15.71■□□□□ 0.11
SHMT2-201ENST00000328923 KIAA0556O60303 1618 aa15.71■□□□□ 0.11
SHMT2-201ENST00000328923 CCDC18Q5T9S5 1454 aa15.7■□□□□ 0.1
SHMT2-201ENST00000328923 MTUS2Q5JR59 1369 aa15.7■□□□□ 0.1
SHMT2-201ENST00000328923 HECW1Q76N89 1606 aa15.7■□□□□ 0.1
SHMT2-201ENST00000328923 HFM1A2PYH4 1435 aa15.7■□□□□ 0.1
SHMT2-201ENST00000328923 SHROOM2Q13796 1616 aa15.69■□□□□ 0.1
SHMT2-201ENST00000328923 CALD1Q05682 793 aaKnown RBP15.69■□□□□ 0.1
SHMT2-201ENST00000328923 PTPN23Q9H3S7 1636 aa15.68■□□□□ 0.1
SHMT2-201ENST00000328923 PDE4AP27815 886 aa15.67■□□□□ 0.1
SHMT2-201ENST00000328923 EHBP1L1Q8N3D4 1523 aa15.67■□□□□ 0.1
SHMT2-201ENST00000328923 ARID4BQ4LE39 1312 aaPredicted RBP15.67■□□□□ 0.1
SHMT2-201ENST00000328923 SUPT6HQ7KZ85 1726 aaKnown RBP15.66■□□□□ 0.1
SHMT2-201ENST00000328923 CNTLNQ9NXG0 1405 aa15.65■□□□□ 0.1
SHMT2-201ENST00000328923 SLC4A3P48751 1232 aa15.65■□□□□ 0.1
SHMT2-201ENST00000328923 ZBED9Q6R2W3 1325 aa15.65■□□□□ 0.1
SHMT2-201ENST00000328923 EPRSP07814 1512 aaKnown RBP15.65■□□□□ 0.1
SHMT2-201ENST00000328923 MAGI3Q5TCQ9 1506 aa15.65■□□□□ 0.1
SHMT2-201ENST00000328923 FRAT2O75474 233 aaPredicted RBP15.64■□□□□ 0.09
SHMT2-201ENST00000328923 JPH4Q96JJ6 628 aa15.64■□□□□ 0.09
SHMT2-201ENST00000328923 FGD6Q6ZV73 1430 aa15.64■□□□□ 0.09
SHMT2-201ENST00000328923 TAF7LQ5H9L4 462 aa15.63■□□□□ 0.09
SHMT2-201ENST00000328923 AKNAQ7Z591 1439 aa15.62■□□□□ 0.09
SHMT2-201ENST00000328923 BACH2Q9BYV9 841 aa15.62■□□□□ 0.09
SHMT2-201ENST00000328923 BBXQ8WY36 941 aaPredicted RBP15.61■□□□□ 0.09
SHMT2-201ENST00000328923 CCDC184Q52MB2 194 aa15.61■□□□□ 0.09
SHMT2-201ENST00000328923 CDK13Q14004 1512 aaKnown RBP15.61■□□□□ 0.09
SHMT2-201ENST00000328923 CLCN1P35523 988 aa15.6■□□□□ 0.09
SHMT2-201ENST00000328923 NAP1L2Q9ULW6 460 aaPredicted RBP15.6■□□□□ 0.09
SHMT2-201ENST00000328923 MYOM3Q5VTT5 1437 aa15.6■□□□□ 0.09
SHMT2-201ENST00000328923 CARMIL2Q6F5E8 1435 aa15.6■□□□□ 0.09
SHMT2-201ENST00000328923 ERCC6L2Q5T890 1561 aa15.59■□□□□ 0.09
SHMT2-201ENST00000328923 DDRGK1Q96HY6 314 aa15.59■□□□□ 0.09
SHMT2-201ENST00000328923 CENPJQ9HC77 1338 aaPredicted RBP15.59■□□□□ 0.09
SHMT2-201ENST00000328923 PDCL3Q9H2J4 239 aa15.58■□□□□ 0.09
SHMT2-201ENST00000328923 PRG4Q92954 1404 aaPredicted RBP15.58■□□□□ 0.09
SHMT2-201ENST00000328923 POLR1AO95602 1720 aaPredicted RBP15.58■□□□□ 0.08
SHMT2-201ENST00000328923 RAPGEF6Q8TEU7 1601 aa15.58■□□□□ 0.08
SHMT2-201ENST00000328923 TCERG1O14776 1098 aaKnown RBP15.58■□□□□ 0.08
SHMT2-201ENST00000328923 CHMP4BQ9H444 224 aaKnown RBP15.58■□□□□ 0.08
SHMT2-201ENST00000328923 NAIPQ13075 1403 aa15.57■□□□□ 0.08
SHMT2-201ENST00000328923 KLHL34Q8N239 644 aa15.57■□□□□ 0.08
SHMT2-201ENST00000328923 GTF2E1P29083 439 aaPredicted RBP15.57■□□□□ 0.08
SHMT2-201ENST00000328923 FAM9BQ8IZU0 186 aa15.56■□□□□ 0.08
SHMT2-201ENST00000328923 NUP153P49790 1475 aaKnown RBP15.56■□□□□ 0.08
SHMT2-201ENST00000328923 NCOA1Q15788 1441 aa15.56■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 68.7 ms