RNA–Protein interactions for RNA: ENST00000324288.12

CIITA-201, Transcript of class II major histocompatibility complex transactivator, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CIITA, Length 11,952 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-201ENST00000324288 GBP4Q96PP9 640 aa10.03□□□□□ -0.8
CIITA-201ENST00000324288 SIN3AQ96ST3 1273 aa10.02□□□□□ -0.8
CIITA-201ENST00000324288 PTMSP20962 102 aa10.02□□□□□ -0.81
CIITA-201ENST00000324288 GOLGA6L3A6NEY3 463 aa10.02□□□□□ -0.81
CIITA-201ENST00000324288 NUDCQ9Y266 331 aa10□□□□□ -0.81
CIITA-201ENST00000324288 NOL8Q76FK4 1167 aaKnown RBP10□□□□□ -0.81
CIITA-201ENST00000324288 MLECQ14165 292 aa9.99□□□□□ -0.81
CIITA-201ENST00000324288 FBXO3Q9UK99 471 aa9.99□□□□□ -0.81
CIITA-201ENST00000324288 BCL11BQ9C0K0 894 aaPredicted RBP9.98□□□□□ -0.81
CIITA-201ENST00000324288 CDCA8Q53HL2 280 aa9.98□□□□□ -0.81
CIITA-201ENST00000324288 CREBRFQ8IUR6 639 aa9.98□□□□□ -0.81
CIITA-201ENST00000324288 SLC4A3P48751 1232 aa9.98□□□□□ -0.81
CIITA-201ENST00000324288 GOLGA6L1Q8N7Z2 621 aa9.98□□□□□ -0.81
CIITA-201ENST00000324288 MCCP23508 829 aa9.97□□□□□ -0.81
CIITA-201ENST00000324288 MFAP1P55081 439 aaKnown RBP9.97□□□□□ -0.81
CIITA-201ENST00000324288 CCAR2Q8N163 923 aaKnown RBP9.97□□□□□ -0.81
CIITA-201ENST00000324288 ZNF771Q7L3S4 317 aaPredicted RBP9.97□□□□□ -0.81
CIITA-201ENST00000324288 PLEKHD1A6NEE1 506 aa9.97□□□□□ -0.81
CIITA-201ENST00000324288 RSPH6AQ9H0K4 717 aa9.96□□□□□ -0.82
CIITA-201ENST00000324288 CFDP1Q9UEE9 299 aaPredicted RBP9.96□□□□□ -0.82
CIITA-201ENST00000324288 SRPK2P78362 688 aaKnown RBP9.96□□□□□ -0.82
CIITA-201ENST00000324288 HSP90B1P14625 803 aaKnown RBP9.96□□□□□ -0.82
CIITA-201ENST00000324288 STK26Q9P289 416 aa9.95□□□□□ -0.82
CIITA-201ENST00000324288 KIAA1211Q6ZU35 1233 aa9.95□□□□□ -0.82
CIITA-201ENST00000324288 IPO9Q96P70 1041 aaKnown RBP9.95□□□□□ -0.82
CIITA-201ENST00000324288 FOXD4L6Q3SYB3 417 aaPredicted RBP9.94□□□□□ -0.82
CIITA-201ENST00000324288 FOXD4L3Q6VB84 417 aaPredicted RBP9.94□□□□□ -0.82
CIITA-201ENST00000324288 CHMP3Q9Y3E7 222 aa9.94□□□□□ -0.82
CIITA-201ENST00000324288 PAK3O75914 559 aaPredicted RBP9.93□□□□□ -0.82
CIITA-201ENST00000324288 ITPRIPQ8IWB1 547 aa9.93□□□□□ -0.82
CIITA-201ENST00000324288 MORC1Q86VD1 984 aa9.93□□□□□ -0.82
CIITA-201ENST00000324288 FAM13BQ9NYF5 915 aa9.92□□□□□ -0.82
CIITA-201ENST00000324288 CCDC9Q9Y3X0 531 aaKnown RBP9.92□□□□□ -0.82
CIITA-201ENST00000324288 DCAF11Q8TEB1 546 aa9.92□□□□□ -0.82
CIITA-201ENST00000324288 CEP162Q5TB80 1403 aa9.92□□□□□ -0.82
CIITA-201ENST00000324288 RSF1Q96T23 1441 aaPredicted RBP9.91□□□□□ -0.82
CIITA-201ENST00000324288 CALRP27797 417 aaKnown RBP9.91□□□□□ -0.82
CIITA-201ENST00000324288 RCAN3Q9UKA8 241 aa9.91□□□□□ -0.82
CIITA-201ENST00000324288 RTF1Q92541 710 aaKnown RBP9.91□□□□□ -0.82
CIITA-201ENST00000324288 ZNF592Q92610 1267 aa9.91□□□□□ -0.82
CIITA-201ENST00000324288 CHMP4BQ9H444 224 aaKnown RBP9.9□□□□□ -0.82
CIITA-201ENST00000324288 FOXD1Q16676 465 aa9.9□□□□□ -0.82
CIITA-201ENST00000324288 CALD1Q05682 793 aaKnown RBP9.9□□□□□ -0.82
CIITA-201ENST00000324288 MS4A1P11836 297 aa9.9□□□□□ -0.82
CIITA-201ENST00000324288 VPS53Q5VIR6 699 aa9.9□□□□□ -0.82
CIITA-201ENST00000324288 EIF4G1Q04637 1599 aaKnown RBP9.9□□□□□ -0.83
CIITA-201ENST00000324288 RASSF8Q8NHQ8 419 aa9.89□□□□□ -0.83
CIITA-201ENST00000324288 SETQ01105 290 aaPredicted RBP9.89□□□□□ -0.83
CIITA-201ENST00000324288 GON4LQ3T8J9 2241 aa9.89□□□□□ -0.83
CIITA-201ENST00000324288 TCERG1O14776 1098 aaKnown RBP9.89□□□□□ -0.83
CIITA-201ENST00000324288 TRIM6-TRIM34B2RNG4 842 aa9.89□□□□□ -0.83
CIITA-201ENST00000324288 TAF7LQ5H9L4 462 aa9.89□□□□□ -0.83
CIITA-201ENST00000324288 WWC1Q8IX03 1113 aa9.89□□□□□ -0.83
CIITA-201ENST00000324288 CSB-PGBD3P0DP91 1061 aa9.88□□□□□ -0.83
CIITA-201ENST00000324288 FBXW7Q969H0 707 aa9.88□□□□□ -0.83
CIITA-201ENST00000324288 TRHP20396 242 aaPredicted RBP9.88□□□□□ -0.83
CIITA-201ENST00000324288 SYAP1Q96A49 352 aaPredicted RBP9.88□□□□□ -0.83
CIITA-201ENST00000324288 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP9.87□□□□□ -0.83
CIITA-201ENST00000324288 TMF1P82094 1093 aa9.87□□□□□ -0.83
CIITA-201ENST00000324288 TPM4P67936 248 aa9.86□□□□□ -0.83
CIITA-201ENST00000324288 GORABQ5T7V8 394 aa9.86□□□□□ -0.83
CIITA-201ENST00000324288 GOLGA3Q08378 1498 aa9.85□□□□□ -0.83
CIITA-201ENST00000324288 CCDC146Q8IYE0 955 aa9.85□□□□□ -0.83
CIITA-201ENST00000324288 PKNOX2Q96KN3 472 aa9.85□□□□□ -0.83
CIITA-201ENST00000324288 U2AF1L5P0DN76 240 aaPredicted RBP9.85□□□□□ -0.83
CIITA-201ENST00000324288 U2AF1Q01081 240 aaKnown RBP eCLIP9.85□□□□□ -0.83
CIITA-201ENST00000324288 MAPK8IP2Q13387 824 aaPredicted RBP9.85□□□□□ -0.83
CIITA-201ENST00000324288 PES1O00541 588 aaKnown RBP9.84□□□□□ -0.83
CIITA-201ENST00000324288 TOMM22Q9NS69 142 aa9.84□□□□□ -0.83
CIITA-201ENST00000324288 SLC4A10Q6U841 1118 aa9.83□□□□□ -0.84
CIITA-201ENST00000324288 NUTM2DQ5VT03 806 aaPredicted RBP9.83□□□□□ -0.84
CIITA-201ENST00000324288 HSPA5P11021 654 aaKnown RBP9.82□□□□□ -0.84
CIITA-201ENST00000324288 LTV1Q96GA3 475 aaPredicted RBP9.82□□□□□ -0.84
CIITA-201ENST00000324288 CCER2I3L3R5 266 aa9.82□□□□□ -0.84
CIITA-201ENST00000324288 RWDD1Q9H446 243 aaPredicted RBP9.82□□□□□ -0.84
CIITA-201ENST00000324288 BRPF3Q9ULD4 1205 aa9.82□□□□□ -0.84
CIITA-201ENST00000324288 TPM3P06753 285 aa9.82□□□□□ -0.84
CIITA-201ENST00000324288 USP35Q9P2H5 1018 aa9.81□□□□□ -0.84
CIITA-201ENST00000324288 CLUAP1Q96AJ1 413 aa9.81□□□□□ -0.84
CIITA-201ENST00000324288 GPATCH3Q96I76 525 aa9.81□□□□□ -0.84
CIITA-201ENST00000324288 KANK1Q14678 1352 aa9.81□□□□□ -0.84
CIITA-201ENST00000324288 CCNB3Q8WWL7 1395 aa9.81□□□□□ -0.84
CIITA-201ENST00000324288 KTN1Q86UP2 1357 aaKnown RBP9.81□□□□□ -0.84
CIITA-201ENST00000324288 BAZ1BQ9UIG0 1483 aaKnown RBP9.8□□□□□ -0.84
CIITA-201ENST00000324288 IPO8O15397 1037 aaKnown RBP9.8□□□□□ -0.84
CIITA-201ENST00000324288 PODXL2Q9NZ53 605 aa9.8□□□□□ -0.84
CIITA-201ENST00000324288 G3V3G9 751 aa9.8□□□□□ -0.84
CIITA-201ENST00000324288 FOSBP53539 338 aa9.8□□□□□ -0.84
CIITA-201ENST00000324288 DCAF8Q5TAQ9 597 aa9.8□□□□□ -0.84
CIITA-201ENST00000324288 DDX11L8A8MPP1 907 aa9.79□□□□□ -0.84
CIITA-201ENST00000324288 PRKCSHP14314 528 aaPredicted RBP9.79□□□□□ -0.84
CIITA-201ENST00000324288 PHF14O94880 888 aa9.79□□□□□ -0.84
CIITA-201ENST00000324288 ERCC6Q03468 1493 aa9.79□□□□□ -0.84
CIITA-201ENST00000324288 TMX4Q9H1E5 349 aaPredicted RBP9.79□□□□□ -0.84
CIITA-201ENST00000324288 GSE1Q14687 1217 aa9.79□□□□□ -0.84
CIITA-201ENST00000324288 GGT6Q6P531 493 aa9.79□□□□□ -0.84
CIITA-201ENST00000324288 MARCH6O60337 910 aa9.79□□□□□ -0.84
CIITA-201ENST00000324288 SF3A1Q15459 793 aaKnown RBP9.78□□□□□ -0.84
CIITA-201ENST00000324288 SMC4Q9NTJ3 1288 aa9.78□□□□□ -0.84
CIITA-201ENST00000324288 ROCK2O75116 1388 aaKnown RBP9.78□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 65.8 ms