RNA–Protein interactions for RNA: ENST00000324238.6

CRLF3-201, Transcript of cytokine receptor like factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CRLF3, Length 2,957 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CRLF3-201ENST00000324238 CHMP7Q8WUX9 453 aaPredicted RBP27.4■■□□□ 1.98
CRLF3-201ENST00000324238 PRKRIP1Q9H875 184 aaPredicted RBP27.4■■□□□ 1.98
CRLF3-201ENST00000324238 THOC2Q8NI27 1593 aaKnown RBP27.4■■□□□ 1.98
CRLF3-201ENST00000324238 IQGAP2Q13576 1575 aa27.39■■□□□ 1.97
CRLF3-201ENST00000324238 B4GALNT3Q6L9W6 998 aa27.38■■□□□ 1.97
CRLF3-201ENST00000324238 CDK11AQ9UQ88 783 aaPredicted RBP27.36■■□□□ 1.97
CRLF3-201ENST00000324238 CCDC7Q96M83 1385 aa27.34■■□□□ 1.97
CRLF3-201ENST00000324238 CNTLNQ9NXG0 1405 aa27.33■■□□□ 1.96
CRLF3-201ENST00000324238 CFDP1Q9UEE9 299 aaPredicted RBP27.32■■□□□ 1.96
CRLF3-201ENST00000324238 ARHGEF11O15085 1522 aa27.31■■□□□ 1.96
CRLF3-201ENST00000324238 MRC2Q9UBG0 1479 aa27.31■■□□□ 1.96
CRLF3-201ENST00000324238 KIF7Q2M1P5 1343 aa27.3■■□□□ 1.96
CRLF3-201ENST00000324238 PRG4Q92954 1404 aaPredicted RBP27.28■■□□□ 1.96
CRLF3-201ENST00000324238 HECW1Q76N89 1606 aa27.28■■□□□ 1.96
CRLF3-201ENST00000324238 PBRM1Q86U86 1689 aa27.28■■□□□ 1.96
CRLF3-201ENST00000324238 TCOF1Q13428 1488 aaKnown RBP27.27■■□□□ 1.96
CRLF3-201ENST00000324238 ADAMTS12P58397 1594 aa27.26■■□□□ 1.95
CRLF3-201ENST00000324238 ANKRD30BQ9BXX2 1392 aa27.25■■□□□ 1.95
CRLF3-201ENST00000324238 NCOA1Q15788 1441 aa27.23■■□□□ 1.95
CRLF3-201ENST00000324238 WDR62O43379 1518 aa27.21■■□□□ 1.95
CRLF3-201ENST00000324238 ABCC5O15440 1437 aa27.21■■□□□ 1.95
CRLF3-201ENST00000324238 PPP4R2Q9NY27 417 aa27.21■■□□□ 1.95
CRLF3-201ENST00000324238 DAPK1P53355 1430 aa27.2■■□□□ 1.94
CRLF3-201ENST00000324238 ERCC6Q03468 1493 aa27.19■■□□□ 1.94
CRLF3-201ENST00000324238 PLB1Q6P1J6 1458 aa27.19■■□□□ 1.94
CRLF3-201ENST00000324238 NUP153P49790 1475 aaKnown RBP27.18■■□□□ 1.94
CRLF3-201ENST00000324238 DISP1Q96F81 1524 aa27.18■■□□□ 1.94
CRLF3-201ENST00000324238 GCC2Q8IWJ2 1684 aa27.18■■□□□ 1.94
CRLF3-201ENST00000324238 MIA2Q96PC5 1412 aa27.17■■□□□ 1.94
CRLF3-201ENST00000324238 JPH4Q96JJ6 628 aa27.16■■□□□ 1.94
CRLF3-201ENST00000324238 KDM2AQ9Y2K7 1162 aa27.15■■□□□ 1.94
CRLF3-201ENST00000324238 PKD2Q13563 968 aa27.15■■□□□ 1.94
CRLF3-201ENST00000324238 ERICH6Q7L0X2 663 aa27.14■■□□□ 1.94
CRLF3-201ENST00000324238 RPRD2Q5VT52 1461 aaKnown RBP27.13■■□□□ 1.93
CRLF3-201ENST00000324238 KIAA0586Q9BVV6 1533 aa27.13■■□□□ 1.93
CRLF3-201ENST00000324238 IFT140Q96RY7 1462 aa27.12■■□□□ 1.93
CRLF3-201ENST00000324238 ZBED9Q6R2W3 1325 aa27.11■■□□□ 1.93
CRLF3-201ENST00000324238 BCL11AQ9H165 835 aa27.1■■□□□ 1.93
CRLF3-201ENST00000324238 TEX14Q8IWB6 1497 aa27.1■■□□□ 1.93
CRLF3-201ENST00000324238 GRIN2AQ12879 1464 aa27.09■■□□□ 1.93
CRLF3-201ENST00000324238 AKNAQ7Z591 1439 aa27.09■■□□□ 1.93
CRLF3-201ENST00000324238 SPATA31E1Q6ZUB1 1445 aa27.06■■□□□ 1.92
CRLF3-201ENST00000324238 HNRNPMP52272 730 aaKnown RBP eCLIP27.06■■□□□ 1.92
CRLF3-201ENST00000324238 PLEKHD1A6NEE1 506 aa27.05■■□□□ 1.92
CRLF3-201ENST00000324238 SALL2Q9Y467 1007 aaPredicted RBP27.05■■□□□ 1.92
CRLF3-201ENST00000324238 KIAA0556O60303 1618 aa27.05■■□□□ 1.92
CRLF3-201ENST00000324238 FANCIQ9NVI1 1328 aa27.03■■□□□ 1.92
CRLF3-201ENST00000324238 USP47Q96K76 1375 aa27.02■■□□□ 1.92
CRLF3-201ENST00000324238 ROCK1Q13464 1354 aa27.01■■□□□ 1.91
CRLF3-201ENST00000324238 EIF4G3O43432 1585 aaKnown RBP26.98■■□□□ 1.91
CRLF3-201ENST00000324238 PZPP20742 1482 aa26.98■■□□□ 1.91
CRLF3-201ENST00000324238 TROQ12816 1431 aaPredicted RBP26.97■■□□□ 1.91
CRLF3-201ENST00000324238 RAPGEF6Q8TEU7 1601 aa26.97■■□□□ 1.91
CRLF3-201ENST00000324238 CAMSAP2Q08AD1 1489 aa26.96■■□□□ 1.91
CRLF3-201ENST00000324238 DHX29Q7Z478 1369 aaKnown RBP26.96■■□□□ 1.91
CRLF3-201ENST00000324238 NUP155O75694 1391 aa26.95■■□□□ 1.91
CRLF3-201ENST00000324238 CARD11Q9BXL7 1154 aa26.95■■□□□ 1.9
CRLF3-201ENST00000324238 GRWD1Q9BQ67 446 aaKnown RBP eCLIP26.94■■□□□ 1.9
CRLF3-201ENST00000324238 GPATCH8Q9UKJ3 1502 aaKnown RBP26.94■■□□□ 1.9
CRLF3-201ENST00000324238 TMC1Q8TDI8 760 aa26.94■■□□□ 1.9
CRLF3-201ENST00000324238 DNMT1P26358 1616 aaKnown RBP26.93■■□□□ 1.9
CRLF3-201ENST00000324238 TSPY4P0CV99 314 aa26.93■■□□□ 1.9
CRLF3-201ENST00000324238 TSPY10P0CW01 314 aa26.93■■□□□ 1.9
CRLF3-201ENST00000324238 RGL3Q3MIN7 710 aa26.92■■□□□ 1.9
CRLF3-201ENST00000324238 ERICH6BQ5W0A0 696 aa26.92■■□□□ 1.9
CRLF3-201ENST00000324238 KIF14Q15058 1648 aa26.92■■□□□ 1.9
CRLF3-201ENST00000324238 ST20-MTHFSA0A0A6YYL1 179 aa26.91■■□□□ 1.9
CRLF3-201ENST00000324238 CCDC136Q96JN2 1154 aa26.91■■□□□ 1.9
CRLF3-201ENST00000324238 DCAF11Q8TEB1 546 aa26.9■■□□□ 1.9
CRLF3-201ENST00000324238 CEP170Q5SW79 1584 aa26.89■■□□□ 1.89
CRLF3-201ENST00000324238 NUDCQ9Y266 331 aa26.88■■□□□ 1.89
CRLF3-201ENST00000324238 BCORL1Q5H9F3 1711 aa26.87■■□□□ 1.89
CRLF3-201ENST00000324238 CARMIL2Q6F5E8 1435 aa26.87■■□□□ 1.89
CRLF3-201ENST00000324238 ANKRD30AQ9BXX3 1397 aa26.87■■□□□ 1.89
CRLF3-201ENST00000324238 KIAA1107Q9UPP5 1409 aa26.86■■□□□ 1.89
CRLF3-201ENST00000324238 NBR1Q14596 966 aa26.86■■□□□ 1.89
CRLF3-201ENST00000324238 PAK3O75914 559 aaPredicted RBP26.85■■□□□ 1.89
CRLF3-201ENST00000324238 PNISRQ8TF01 805 aaKnown RBP26.85■■□□□ 1.89
CRLF3-201ENST00000324238 ANKRD50Q9ULJ7 1429 aa26.85■■□□□ 1.89
CRLF3-201ENST00000324238 SYNJ2O15056 1496 aa26.83■■□□□ 1.88
CRLF3-201ENST00000324238 SMG6Q86US8 1419 aaKnown RBP26.78■■□□□ 1.88
CRLF3-201ENST00000324238 ATP10BO94823 1461 aa26.75■■□□□ 1.87
CRLF3-201ENST00000324238 MAGI1Q96QZ7 1491 aaPredicted RBP26.75■■□□□ 1.87
CRLF3-201ENST00000324238 MBD5Q9P267 1494 aa26.74■■□□□ 1.87
CRLF3-201ENST00000324238 C9orf84Q5VXU9 1444 aa26.73■■□□□ 1.87
CRLF3-201ENST00000324238 KIF15Q9NS87 1388 aa26.72■■□□□ 1.87
CRLF3-201ENST00000324238 NBPF1Q3BBV0 1214 aa26.71■■□□□ 1.87
CRLF3-201ENST00000324238 NOP58Q9Y2X3 529 aaKnown RBP26.7■■□□□ 1.86
CRLF3-201ENST00000324238 PTPRGP23470 1445 aa26.69■■□□□ 1.86
CRLF3-201ENST00000324238 NPM2Q86SE8 214 aaKnown RBP26.69■■□□□ 1.86
CRLF3-201ENST00000324238 EXOC6Q8TAG9 804 aa26.69■■□□□ 1.86
CRLF3-201ENST00000324238 CC2D1BQ5T0F9 858 aaKnown RBP26.67■■□□□ 1.86
CRLF3-201ENST00000324238 CDCA7LQ96GN5 454 aa26.66■■□□□ 1.86
CRLF3-201ENST00000324238 KDM5CP41229 1560 aa26.65■■□□□ 1.86
CRLF3-201ENST00000324238 ROCK2O75116 1388 aaKnown RBP26.65■■□□□ 1.86
CRLF3-201ENST00000324238 SKAP1Q86WV1 359 aa26.65■■□□□ 1.86
CRLF3-201ENST00000324238 NUP160Q12769 1436 aa26.64■■□□□ 1.85
CRLF3-201ENST00000324238 RNF123Q5XPI4 1314 aa26.63■■□□□ 1.85
CRLF3-201ENST00000324238 PLIN1O60240 522 aa26.62■■□□□ 1.85
CRLF3-201ENST00000324238 DEKP35659 375 aaKnown RBP26.62■■□□□ 1.85
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms