RNA–Protein interactions for RNA: ENST00000324106.8

CD28-201, Transcript of CD28 molecule, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CD28, Length 4,812 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD28-201ENST00000324106 RAPGEF2Q9Y4G8 1499 aa11.64□□□□□ -0.55
CD28-201ENST00000324106 PAK3O75914 559 aaPredicted RBP11.63□□□□□ -0.55
CD28-201ENST00000324106 TOP2AP11388 1531 aaKnown RBP11.63□□□□□ -0.55
CD28-201ENST00000324106 NUP155O75694 1391 aa11.63□□□□□ -0.55
CD28-201ENST00000324106 CCDC18Q5T9S5 1454 aa11.63□□□□□ -0.55
CD28-201ENST00000324106 NEUROD2Q15784 382 aa11.63□□□□□ -0.55
CD28-201ENST00000324106 MORC1Q86VD1 984 aa11.63□□□□□ -0.55
CD28-201ENST00000324106 VPS8Q8N3P4 1428 aa11.63□□□□□ -0.55
CD28-201ENST00000324106 FANCD2Q9BXW9 1451 aa11.63□□□□□ -0.55
CD28-201ENST00000324106 SAFB2Q14151 953 aaKnown RBP eCLIP11.62□□□□□ -0.55
CD28-201ENST00000324106 SOX12O15370 315 aa11.62□□□□□ -0.55
CD28-201ENST00000324106 TNNT2P45379 298 aaPredicted RBP11.62□□□□□ -0.55
CD28-201ENST00000324106 CCDC9Q9Y3X0 531 aaKnown RBP11.62□□□□□ -0.55
CD28-201ENST00000324106 TMX4Q9H1E5 349 aaPredicted RBP11.61□□□□□ -0.55
CD28-201ENST00000324106 DNAJC5BQ9UF47 199 aa11.61□□□□□ -0.55
CD28-201ENST00000324106 EIF3AQ14152 1382 aaKnown RBP11.6□□□□□ -0.55
CD28-201ENST00000324106 OS9Q13438 667 aaPredicted RBP11.6□□□□□ -0.55
CD28-201ENST00000324106 CALD1Q05682 793 aaKnown RBP11.6□□□□□ -0.55
CD28-201ENST00000324106 TERF2IPQ9NYB0 399 aa11.59□□□□□ -0.55
CD28-201ENST00000324106 NCLP19338 710 aaKnown RBP11.59□□□□□ -0.55
CD28-201ENST00000324106 NGDNQ8NEJ9 315 aaKnown RBP11.58□□□□□ -0.56
CD28-201ENST00000324106 SETD5Q9C0A6 1442 aa11.57□□□□□ -0.56
CD28-201ENST00000324106 BECN1Q14457 450 aa11.57□□□□□ -0.56
CD28-201ENST00000324106 SIN3AQ96ST3 1273 aa11.57□□□□□ -0.56
CD28-201ENST00000324106 HNRNPMP52272 730 aaKnown RBP eCLIP11.56□□□□□ -0.56
CD28-201ENST00000324106 WDR62O43379 1518 aa11.56□□□□□ -0.56
CD28-201ENST00000324106 CC2D1BQ5T0F9 858 aaKnown RBP11.56□□□□□ -0.56
CD28-201ENST00000324106 HDAC5Q9UQL6 1122 aa11.56□□□□□ -0.56
CD28-201ENST00000324106 ZRSR1Q15695 479 aaKnown RBP11.55□□□□□ -0.56
CD28-201ENST00000324106 FAM69CQ0P6D2 419 aa11.54□□□□□ -0.56
CD28-201ENST00000324106 GOLGA6L22H0YM25 854 aa11.54□□□□□ -0.56
CD28-201ENST00000324106 VGFO15240 615 aaPredicted RBP11.53□□□□□ -0.56
CD28-201ENST00000324106 MPHOSPH9Q99550 1183 aa11.53□□□□□ -0.56
CD28-201ENST00000324106 UACAQ9BZF9 1416 aa11.52□□□□□ -0.56
CD28-201ENST00000324106 FGD1P98174 961 aa11.52□□□□□ -0.57
CD28-201ENST00000324106 ANP32EQ9BTT0 268 aa11.51□□□□□ -0.57
CD28-201ENST00000324106 ROCK2O75116 1388 aaKnown RBP11.51□□□□□ -0.57
CD28-201ENST00000324106 FRAT1Q92837 279 aaPredicted RBP11.51□□□□□ -0.57
CD28-201ENST00000324106 KCNJ4P48050 445 aa11.51□□□□□ -0.57
CD28-201ENST00000324106 CFAP44Q96MT7 982 aa11.51□□□□□ -0.57
CD28-201ENST00000324106 FHOD3Q2V2M9 1422 aa11.5□□□□□ -0.57
CD28-201ENST00000324106 IPO8O15397 1037 aaKnown RBP11.5□□□□□ -0.57
CD28-201ENST00000324106 DDRGK1Q96HY6 314 aa11.49□□□□□ -0.57
CD28-201ENST00000324106 KTN1Q86UP2 1357 aaKnown RBP11.49□□□□□ -0.57
CD28-201ENST00000324106 GAPVD1Q14C86 1478 aa11.48□□□□□ -0.57
CD28-201ENST00000324106 AMPHP49418 695 aa11.48□□□□□ -0.57
CD28-201ENST00000324106 ABCF1Q8NE71 845 aaKnown RBP eCLIP11.48□□□□□ -0.57
CD28-201ENST00000324106 U2AF1L5P0DN76 240 aaPredicted RBP11.47□□□□□ -0.57
CD28-201ENST00000324106 U2AF1Q01081 240 aaKnown RBP eCLIP11.47□□□□□ -0.57
CD28-201ENST00000324106 MIER1Q8N108 512 aa11.47□□□□□ -0.57
CD28-201ENST00000324106 LMOD3Q0VAK6 560 aa11.47□□□□□ -0.57
CD28-201ENST00000324106 STK31Q9BXU1 1019 aa11.46□□□□□ -0.57
CD28-201ENST00000324106 ZNF330Q9Y3S2 320 aaPredicted RBP11.46□□□□□ -0.57
CD28-201ENST00000324106 KANK4Q5T7N3 995 aaPredicted RBP11.46□□□□□ -0.58
CD28-201ENST00000324106 RALBP1Q15311 655 aa11.44□□□□□ -0.58
CD28-201ENST00000324106 WIZO95785 1651 aa11.43□□□□□ -0.58
CD28-201ENST00000324106 GTF2E1P29083 439 aaPredicted RBP11.43□□□□□ -0.58
CD28-201ENST00000324106 EVA1CP58658 441 aa11.43□□□□□ -0.58
CD28-201ENST00000324106 CCDC144AA2RUR9 1427 aa11.43□□□□□ -0.58
CD28-201ENST00000324106 STAC3Q96MF2 364 aa11.43□□□□□ -0.58
CD28-201ENST00000324106 G3V3G9 751 aa11.42□□□□□ -0.58
CD28-201ENST00000324106 DCAF8Q5TAQ9 597 aa11.42□□□□□ -0.58
CD28-201ENST00000324106 KIF21AQ7Z4S6 1674 aa11.42□□□□□ -0.58
CD28-201ENST00000324106 HSPA5P11021 654 aaKnown RBP11.41□□□□□ -0.58
CD28-201ENST00000324106 MCCP23508 829 aa11.41□□□□□ -0.58
CD28-201ENST00000324106 FOXD1Q16676 465 aa11.41□□□□□ -0.58
CD28-201ENST00000324106 ISY1Q9ULR0 285 aaKnown RBP11.41□□□□□ -0.58
CD28-201ENST00000324106 TAF7LQ5H9L4 462 aa11.41□□□□□ -0.58
CD28-201ENST00000324106 IRX6P78412 446 aaPredicted RBP11.41□□□□□ -0.58
CD28-201ENST00000324106 MEX3CQ5U5Q3 659 aaKnown RBP11.41□□□□□ -0.58
CD28-201ENST00000324106 ATF3P18847 181 aa11.39□□□□□ -0.59
CD28-201ENST00000324106 TRAK1Q9UPV9 953 aa11.39□□□□□ -0.59
CD28-201ENST00000324106 EVC2Q86UK5 1308 aa11.39□□□□□ -0.59
CD28-201ENST00000324106 FGD5Q6ZNL6 1462 aa11.39□□□□□ -0.59
CD28-201ENST00000324106 RAB3GAP2Q9H2M9 1393 aa11.39□□□□□ -0.59
CD28-201ENST00000324106 GORABQ5T7V8 394 aa11.39□□□□□ -0.59
CD28-201ENST00000324106 NUTM2DQ5VT03 806 aaPredicted RBP11.38□□□□□ -0.59
CD28-201ENST00000324106 NAP1L2Q9ULW6 460 aaPredicted RBP11.38□□□□□ -0.59
CD28-201ENST00000324106 GRIN2BQ13224 1484 aa11.38□□□□□ -0.59
CD28-201ENST00000324106 COG3Q96JB2 828 aa11.38□□□□□ -0.59
CD28-201ENST00000324106 NUTM2FA1L443 756 aa11.38□□□□□ -0.59
CD28-201ENST00000324106 CCER2I3L3R5 266 aa11.36□□□□□ -0.59
CD28-201ENST00000324106 KIAA1211Q6ZU35 1233 aa11.36□□□□□ -0.59
CD28-201ENST00000324106 C1orf141Q5JVX7 400 aa11.36□□□□□ -0.59
CD28-201ENST00000324106 LTV1Q96GA3 475 aaPredicted RBP11.36□□□□□ -0.59
CD28-201ENST00000324106 HMMRO75330 724 aa11.36□□□□□ -0.59
CD28-201ENST00000324106 TULP1O00294 542 aaPredicted RBP11.35□□□□□ -0.59
CD28-201ENST00000324106 PSME1Q06323 249 aa11.35□□□□□ -0.59
CD28-201ENST00000324106 GPATCH3Q96I76 525 aa11.35□□□□□ -0.59
CD28-201ENST00000324106 MYOM3Q5VTT5 1437 aa11.35□□□□□ -0.59
CD28-201ENST00000324106 MRC2Q9UBG0 1479 aa11.35□□□□□ -0.59
CD28-201ENST00000324106 L3MBTL2Q969R5 705 aa11.35□□□□□ -0.59
CD28-201ENST00000324106 IGF1RP08069 1367 aa11.34□□□□□ -0.59
CD28-201ENST00000324106 DCAF8L1A6NGE4 600 aa11.34□□□□□ -0.59
CD28-201ENST00000324106 SUGP2Q8IX01 1082 aaKnown RBP eCLIP11.34□□□□□ -0.59
CD28-201ENST00000324106 RGS3P49796 1198 aa11.34□□□□□ -0.59
CD28-201ENST00000324106 SENP3-EIF4A1A0A087X0R7 540 aa11.33□□□□□ -0.6
CD28-201ENST00000324106 SUPT16HQ9Y5B9 1047 aaKnown RBP11.33□□□□□ -0.6
CD28-201ENST00000324106 GOLGA6L4A6NEF3 574 aa11.33□□□□□ -0.6
CD28-201ENST00000324106 NRDCO43847 1150 aa11.33□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 8.4 ms