RNA–Protein interactions for RNA: ENST00000320755.11

COL9A1-201, Transcript of collagen type IX alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL9A1, Length 3,059 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-201ENST00000320755 NUP153P49790 1475 aaKnown RBP24.29■■□□□ 1.48
COL9A1-201ENST00000320755 DAPK1P53355 1430 aa24.29■■□□□ 1.48
COL9A1-201ENST00000320755 HNRNPUQ00839 825 aaKnown RBP eCLIP24.29■■□□□ 1.48
COL9A1-201ENST00000320755 TSHZ2Q9NRE2 1034 aa24.29■■□□□ 1.48
COL9A1-201ENST00000320755 ERCC6Q03468 1493 aa24.28■■□□□ 1.48
COL9A1-201ENST00000320755 GCC2Q8IWJ2 1684 aa24.28■■□□□ 1.48
COL9A1-201ENST00000320755 PRG4Q92954 1404 aaPredicted RBP24.28■■□□□ 1.48
COL9A1-201ENST00000320755 ABCC5O15440 1437 aa24.27■■□□□ 1.48
COL9A1-201ENST00000320755 GRIN2AQ12879 1464 aa24.27■■□□□ 1.48
COL9A1-201ENST00000320755 KIAA0556O60303 1618 aa24.26■■□□□ 1.47
COL9A1-201ENST00000320755 C11orf95C9JLR9 678 aaPredicted RBP24.25■■□□□ 1.47
COL9A1-201ENST00000320755 NBPF8Q3BBV2 869 aa24.25■■□□□ 1.47
COL9A1-201ENST00000320755 AKNAQ7Z591 1439 aa24.25■■□□□ 1.47
COL9A1-201ENST00000320755 CNGB1Q14028 1251 aaPredicted RBP24.24■■□□□ 1.47
COL9A1-201ENST00000320755 ZNF326Q5BKZ1 582 aaKnown RBP24.23■■□□□ 1.47
COL9A1-201ENST00000320755 PLB1Q6P1J6 1458 aa24.22■■□□□ 1.47
COL9A1-201ENST00000320755 ANKRD30BQ9BXX2 1392 aa24.2■■□□□ 1.46
COL9A1-201ENST00000320755 JPH4Q96JJ6 628 aa24.2■■□□□ 1.46
COL9A1-201ENST00000320755 EIF4G3O43432 1585 aaKnown RBP24.2■■□□□ 1.46
COL9A1-201ENST00000320755 RAPGEF6Q8TEU7 1601 aa24.19■■□□□ 1.46
COL9A1-201ENST00000320755 CCDC184Q52MB2 194 aa24.18■■□□□ 1.46
COL9A1-201ENST00000320755 POLR3GLQ9BT43 218 aa24.18■■□□□ 1.46
COL9A1-201ENST00000320755 ROCK1Q13464 1354 aa24.18■■□□□ 1.46
COL9A1-201ENST00000320755 IRX6P78412 446 aaPredicted RBP24.15■■□□□ 1.46
COL9A1-201ENST00000320755 TROQ12816 1431 aaPredicted RBP24.14■■□□□ 1.45
COL9A1-201ENST00000320755 FAM9BQ8IZU0 186 aa24.14■■□□□ 1.45
COL9A1-201ENST00000320755 DNMT1P26358 1616 aaKnown RBP24.12■■□□□ 1.45
COL9A1-201ENST00000320755 RPRD2Q5VT52 1461 aaKnown RBP24.11■■□□□ 1.45
COL9A1-201ENST00000320755 CCDC7Q96M83 1385 aa24.1■■□□□ 1.45
COL9A1-201ENST00000320755 PLEKHD1A6NEE1 506 aa24.1■■□□□ 1.45
COL9A1-201ENST00000320755 PKD2Q13563 968 aa24.1■■□□□ 1.45
COL9A1-201ENST00000320755 CAMSAP2Q08AD1 1489 aa24.09■■□□□ 1.45
COL9A1-201ENST00000320755 CEP170Q5SW79 1584 aa24.07■■□□□ 1.44
COL9A1-201ENST00000320755 GPATCH8Q9UKJ3 1502 aaKnown RBP24.07■■□□□ 1.44
COL9A1-201ENST00000320755 CARMIL2Q6F5E8 1435 aa24.07■■□□□ 1.44
COL9A1-201ENST00000320755 MRS2Q9HD23 443 aa24.07■■□□□ 1.44
COL9A1-201ENST00000320755 CNTLNQ9NXG0 1405 aa24.07■■□□□ 1.44
COL9A1-201ENST00000320755 NCOA1Q15788 1441 aa24.06■■□□□ 1.44
COL9A1-201ENST00000320755 PRKRIP1Q9H875 184 aaPredicted RBP24.06■■□□□ 1.44
COL9A1-201ENST00000320755 SYNJ2O15056 1496 aa24.06■■□□□ 1.44
COL9A1-201ENST00000320755 MAGI1Q96QZ7 1491 aaPredicted RBP24.05■■□□□ 1.44
COL9A1-201ENST00000320755 KIF7Q2M1P5 1343 aa24.04■■□□□ 1.44
COL9A1-201ENST00000320755 KIF14Q15058 1648 aa24.04■■□□□ 1.44
COL9A1-201ENST00000320755 TEX14Q8IWB6 1497 aa24.02■■□□□ 1.44
COL9A1-201ENST00000320755 PZPP20742 1482 aa24.01■■□□□ 1.43
COL9A1-201ENST00000320755 ANKRD30AQ9BXX3 1397 aa24■■□□□ 1.43
COL9A1-201ENST00000320755 HNRNPMP52272 730 aaKnown RBP eCLIP23.99■■□□□ 1.43
COL9A1-201ENST00000320755 KDM2AQ9Y2K7 1162 aa23.98■■□□□ 1.43
COL9A1-201ENST00000320755 TSPY4P0CV99 314 aa23.97■■□□□ 1.43
COL9A1-201ENST00000320755 TSPY10P0CW01 314 aa23.97■■□□□ 1.43
COL9A1-201ENST00000320755 NUP155O75694 1391 aa23.96■■□□□ 1.43
COL9A1-201ENST00000320755 ANKRD50Q9ULJ7 1429 aa23.95■■□□□ 1.43
COL9A1-201ENST00000320755 SENP3-EIF4A1A0A087X0R7 540 aa23.95■■□□□ 1.42
COL9A1-201ENST00000320755 KIAA1107Q9UPP5 1409 aa23.94■■□□□ 1.42
COL9A1-201ENST00000320755 MYT1Q01538 1121 aa23.93■■□□□ 1.42
COL9A1-201ENST00000320755 SPATA31E1Q6ZUB1 1445 aa23.92■■□□□ 1.42
COL9A1-201ENST00000320755 NUP160Q12769 1436 aa23.91■■□□□ 1.42
COL9A1-201ENST00000320755 ATP10BO94823 1461 aa23.91■■□□□ 1.42
COL9A1-201ENST00000320755 ITSN2Q9NZM3 1697 aa23.9■■□□□ 1.42
COL9A1-201ENST00000320755 USP47Q96K76 1375 aa23.9■■□□□ 1.42
COL9A1-201ENST00000320755 RBM19Q9Y4C8 960 aaKnown RBP23.87■■□□□ 1.41
COL9A1-201ENST00000320755 C9orf84Q5VXU9 1444 aa23.87■■□□□ 1.41
COL9A1-201ENST00000320755 CARD11Q9BXL7 1154 aa23.86■■□□□ 1.41
COL9A1-201ENST00000320755 DCAF11Q8TEB1 546 aa23.85■■□□□ 1.41
COL9A1-201ENST00000320755 ADGRL2O95490 1459 aa23.84■■□□□ 1.41
COL9A1-201ENST00000320755 ADGBQ8N7X0 1667 aa23.83■■□□□ 1.41
COL9A1-201ENST00000320755 PTPRGP23470 1445 aa23.83■■□□□ 1.41
COL9A1-201ENST00000320755 GRWD1Q9BQ67 446 aaKnown RBP eCLIP23.81■■□□□ 1.4
COL9A1-201ENST00000320755 KIF15Q9NS87 1388 aa23.81■■□□□ 1.4
COL9A1-201ENST00000320755 ADCY10Q96PN6 1610 aa23.79■■□□□ 1.4
COL9A1-201ENST00000320755 ABCC10Q5T3U5 1492 aa23.79■■□□□ 1.4
COL9A1-201ENST00000320755 RGL3Q3MIN7 710 aa23.79■■□□□ 1.4
COL9A1-201ENST00000320755 CDC42BPAQ5VT25 1732 aa23.79■■□□□ 1.4
COL9A1-201ENST00000320755 ABCA8O94911 1581 aa23.78■■□□□ 1.4
COL9A1-201ENST00000320755 ST20-MTHFSA0A0A6YYL1 179 aa23.77■■□□□ 1.4
COL9A1-201ENST00000320755 ZBED9Q6R2W3 1325 aa23.77■■□□□ 1.4
COL9A1-201ENST00000320755 CROCC2H7BZ55 1655 aa23.76■■□□□ 1.39
COL9A1-201ENST00000320755 MBD5Q9P267 1494 aa23.75■■□□□ 1.39
COL9A1-201ENST00000320755 DHX29Q7Z478 1369 aaKnown RBP23.73■■□□□ 1.39
COL9A1-201ENST00000320755 BCORL1Q5H9F3 1711 aa23.72■■□□□ 1.39
COL9A1-201ENST00000320755 B4GALNT3Q6L9W6 998 aa23.72■■□□□ 1.39
COL9A1-201ENST00000320755 TMC1Q8TDI8 760 aa23.7■■□□□ 1.38
COL9A1-201ENST00000320755 ANP32EQ9BTT0 268 aa23.69■■□□□ 1.38
COL9A1-201ENST00000320755 PPP4R2Q9NY27 417 aa23.69■■□□□ 1.38
COL9A1-201ENST00000320755 SHANK2Q9UPX8 1470 aa23.66■■□□□ 1.38
COL9A1-201ENST00000320755 ROCK2O75116 1388 aaKnown RBP23.65■■□□□ 1.38
COL9A1-201ENST00000320755 KDM5CP41229 1560 aa23.63■■□□□ 1.37
COL9A1-201ENST00000320755 POLR1AO95602 1720 aaPredicted RBP23.62■■□□□ 1.37
COL9A1-201ENST00000320755 NBPF1Q3BBV0 1214 aa23.62■■□□□ 1.37
COL9A1-201ENST00000320755 CCDC141Q6ZP82 1450 aa23.62■■□□□ 1.37
COL9A1-201ENST00000320755 UHRF1BP1Q6BDS2 1440 aa23.61■■□□□ 1.37
COL9A1-201ENST00000320755 RALGAPBQ86X10 1494 aa23.61■■□□□ 1.37
COL9A1-201ENST00000320755 SALL2Q9Y467 1007 aaPredicted RBP23.6■■□□□ 1.37
COL9A1-201ENST00000320755 ARID4BQ4LE39 1312 aaPredicted RBP23.6■■□□□ 1.37
COL9A1-201ENST00000320755 PNISRQ8TF01 805 aaKnown RBP23.59■■□□□ 1.37
COL9A1-201ENST00000320755 RSPH4AQ5TD94 716 aa23.58■■□□□ 1.37
COL9A1-201ENST00000320755 SAMD9LQ8IVG5 1584 aa23.58■■□□□ 1.37
COL9A1-201ENST00000320755 ARHGAP5Q13017 1502 aa23.58■■□□□ 1.36
COL9A1-201ENST00000320755 CCDC144AA2RUR9 1427 aa23.58■■□□□ 1.36
COL9A1-201ENST00000320755 ERICH6BQ5W0A0 696 aa23.58■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 8.6 ms