RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 IPO9Q96P70 1041 aaKnown RBP14.78□□□□□ -0.04
VPS39-201ENST00000318006 ANKRD30AQ9BXX3 1397 aa14.78□□□□□ -0.04
VPS39-201ENST00000318006 HSP90AB1P08238 724 aaKnown RBP14.78□□□□□ -0.04
VPS39-201ENST00000318006 NUDCQ9Y266 331 aa14.77□□□□□ -0.04
VPS39-201ENST00000318006 NEUROD2Q15784 382 aa14.77□□□□□ -0.04
VPS39-201ENST00000318006 CASC1Q6TDU7 716 aa14.77□□□□□ -0.04
VPS39-201ENST00000318006 NUP155O75694 1391 aa14.77□□□□□ -0.05
VPS39-201ENST00000318006 FTSJ3Q8IY81 847 aaKnown RBP14.76□□□□□ -0.05
VPS39-201ENST00000318006 EFCAB2Q5VUJ9 269 aa14.76□□□□□ -0.05
VPS39-201ENST00000318006 MAPK8IP3Q9UPT6 1336 aa14.75□□□□□ -0.05
VPS39-201ENST00000318006 TCERG1O14776 1098 aaKnown RBP14.75□□□□□ -0.05
VPS39-201ENST00000318006 ZBTB7CA1YPR0 619 aa14.75□□□□□ -0.05
VPS39-201ENST00000318006 CHAF1AQ13111 956 aaPredicted RBP14.75□□□□□ -0.05
VPS39-201ENST00000318006 HSCBQ8IWL3 235 aa14.75□□□□□ -0.05
VPS39-201ENST00000318006 ZRSR1Q15695 479 aaKnown RBP14.74□□□□□ -0.05
VPS39-201ENST00000318006 PLCB2Q00722 1185 aa14.73□□□□□ -0.05
VPS39-201ENST00000318006 PLEKHG5O94827 1062 aa14.73□□□□□ -0.05
VPS39-201ENST00000318006 CCDC18Q5T9S5 1454 aa14.72□□□□□ -0.05
VPS39-201ENST00000318006 JPH4Q96JJ6 628 aa14.71□□□□□ -0.05
VPS39-201ENST00000318006 GGT6Q6P531 493 aa14.71□□□□□ -0.05
VPS39-201ENST00000318006 UNC13AQ9UPW8 1703 aa14.71□□□□□ -0.06
VPS39-201ENST00000318006 USP35Q9P2H5 1018 aa14.71□□□□□ -0.06
VPS39-201ENST00000318006 RSPH6AQ9H0K4 717 aa14.7□□□□□ -0.06
VPS39-201ENST00000318006 L3MBTL2Q969R5 705 aa14.7□□□□□ -0.06
VPS39-201ENST00000318006 FGD5Q6ZNL6 1462 aa14.69□□□□□ -0.06
VPS39-201ENST00000318006 SYNJ1O43426 1573 aa14.69□□□□□ -0.06
VPS39-201ENST00000318006 RSPH4AQ5TD94 716 aa14.68□□□□□ -0.06
VPS39-201ENST00000318006 FRAT1Q92837 279 aaPredicted RBP14.68□□□□□ -0.06
VPS39-201ENST00000318006 DHX57Q6P158 1386 aaKnown RBP14.68□□□□□ -0.06
VPS39-201ENST00000318006 MS4A1P11836 297 aa14.68□□□□□ -0.06
VPS39-201ENST00000318006 HNRNPMP52272 730 aaKnown RBP eCLIP14.68□□□□□ -0.06
VPS39-201ENST00000318006 TPRNQ4KMQ1 711 aa14.68□□□□□ -0.06
VPS39-201ENST00000318006 IGF1RP08069 1367 aa14.67□□□□□ -0.06
VPS39-201ENST00000318006 U2SURPO15042 1029 aaKnown RBP14.67□□□□□ -0.06
VPS39-201ENST00000318006 ROCK2O75116 1388 aaKnown RBP14.67□□□□□ -0.06
VPS39-201ENST00000318006 GOLGA6L6A8MZA4 724 aa14.66□□□□□ -0.06
VPS39-201ENST00000318006 KTN1Q86UP2 1357 aaKnown RBP14.66□□□□□ -0.06
VPS39-201ENST00000318006 PTMSP20962 102 aa14.66□□□□□ -0.06
VPS39-201ENST00000318006 RAD54L2Q9Y4B4 1467 aa14.66□□□□□ -0.06
VPS39-201ENST00000318006 GOLGA6L3A6NEY3 463 aa14.65□□□□□ -0.06
VPS39-201ENST00000318006 CHMP4BQ9H444 224 aaKnown RBP14.65□□□□□ -0.06
VPS39-201ENST00000318006 NRDCO43847 1150 aa14.65□□□□□ -0.06
VPS39-201ENST00000318006 SRPK2P78362 688 aaKnown RBP14.65□□□□□ -0.06
VPS39-201ENST00000318006 CFTRP13569 1480 aa14.65□□□□□ -0.06
VPS39-201ENST00000318006 HDGFP51858 240 aaKnown RBP14.65□□□□□ -0.06
VPS39-201ENST00000318006 HSP90AA2PQ14568 343 aaPredicted RBP14.65□□□□□ -0.06
VPS39-201ENST00000318006 FANCIQ9NVI1 1328 aa14.65□□□□□ -0.06
VPS39-201ENST00000318006 MLECQ14165 292 aa14.64□□□□□ -0.07
VPS39-201ENST00000318006 MORC1Q86VD1 984 aa14.64□□□□□ -0.07
VPS39-201ENST00000318006 CC2D2AQ9P2K1 1620 aa14.64□□□□□ -0.07
VPS39-201ENST00000318006 GBP4Q96PP9 640 aa14.64□□□□□ -0.07
VPS39-201ENST00000318006 SPRYD3Q8NCJ5 442 aa14.63□□□□□ -0.07
VPS39-201ENST00000318006 HMGXB3Q12766 1538 aa14.63□□□□□ -0.07
VPS39-201ENST00000318006 RALBP1Q15311 655 aa14.62□□□□□ -0.07
VPS39-201ENST00000318006 GZF1Q9H116 711 aaPredicted RBP14.62□□□□□ -0.07
VPS39-201ENST00000318006 SAFB2Q14151 953 aaKnown RBP eCLIP14.62□□□□□ -0.07
VPS39-201ENST00000318006 AMER1Q5JTC6 1135 aaPredicted RBP14.62□□□□□ -0.07
VPS39-201ENST00000318006 SLKQ9H2G2 1235 aaPredicted RBP14.62□□□□□ -0.07
VPS39-201ENST00000318006 KIF3BO15066 747 aa14.61□□□□□ -0.07
VPS39-201ENST00000318006 NESP48681 1621 aa14.6□□□□□ -0.07
VPS39-201ENST00000318006 A0A0G2JS52 829 aa14.6□□□□□ -0.07
VPS39-201ENST00000318006 RCAN3Q9UKA8 241 aa14.6□□□□□ -0.07
VPS39-201ENST00000318006 SPAG9O60271 1321 aaKnown RBP14.6□□□□□ -0.07
VPS39-201ENST00000318006 VSIG10Q8N0Z9 540 aa14.6□□□□□ -0.07
VPS39-201ENST00000318006 KIAA2012Q0VF49 1180 aa14.59□□□□□ -0.07
VPS39-201ENST00000318006 GAPVD1Q14C86 1478 aa14.59□□□□□ -0.07
VPS39-201ENST00000318006 STK26Q9P289 416 aa14.58□□□□□ -0.08
VPS39-201ENST00000318006 HAP1P54257 671 aaPredicted RBP14.58□□□□□ -0.08
VPS39-201ENST00000318006 GSE1Q14687 1217 aa14.57□□□□□ -0.08
VPS39-201ENST00000318006 LMOD2Q6P5Q4 547 aa14.57□□□□□ -0.08
VPS39-201ENST00000318006 ARID3AQ99856 593 aa14.57□□□□□ -0.08
VPS39-201ENST00000318006 CFAP44Q96MT7 982 aa14.55□□□□□ -0.08
VPS39-201ENST00000318006 PTPRGP23470 1445 aa14.55□□□□□ -0.08
VPS39-201ENST00000318006 EIF3AQ14152 1382 aaKnown RBP14.55□□□□□ -0.08
VPS39-201ENST00000318006 GOLGA6L4A6NEF3 574 aa14.54□□□□□ -0.08
VPS39-201ENST00000318006 HDGFL2Q7Z4V5 671 aaPredicted RBP14.54□□□□□ -0.08
VPS39-201ENST00000318006 CUX1P39880 1505 aa14.54□□□□□ -0.08
VPS39-201ENST00000318006 TOP2BQ02880 1626 aa14.54□□□□□ -0.08
VPS39-201ENST00000318006 KIF21BO75037 1637 aa14.53□□□□□ -0.08
VPS39-201ENST00000318006 DRC7Q8IY82 874 aa14.52□□□□□ -0.08
VPS39-201ENST00000318006 NLRP13Q86W25 1043 aa14.51□□□□□ -0.09
VPS39-201ENST00000318006 TRHP20396 242 aaPredicted RBP14.5□□□□□ -0.09
VPS39-201ENST00000318006 TNNT3P45378 269 aaPredicted RBP14.5□□□□□ -0.09
VPS39-201ENST00000318006 SOX12O15370 315 aa14.5□□□□□ -0.09
VPS39-201ENST00000318006 CCDC144AA2RUR9 1427 aa14.5□□□□□ -0.09
VPS39-201ENST00000318006 MCCP23508 829 aa14.49□□□□□ -0.09
VPS39-201ENST00000318006 PEG3Q9GZU2 1588 aa14.49□□□□□ -0.09
VPS39-201ENST00000318006 U2AF1L5P0DN76 240 aaPredicted RBP14.49□□□□□ -0.09
VPS39-201ENST00000318006 U2AF1Q01081 240 aaKnown RBP eCLIP14.49□□□□□ -0.09
VPS39-201ENST00000318006 WASHC2CQ9Y4E1 1318 aa14.49□□□□□ -0.09
VPS39-201ENST00000318006 FGD6Q6ZV73 1430 aa14.48□□□□□ -0.09
VPS39-201ENST00000318006 ST20-MTHFSA0A0A6YYL1 179 aa14.48□□□□□ -0.09
VPS39-201ENST00000318006 SYAP1Q96A49 352 aaPredicted RBP14.48□□□□□ -0.09
VPS39-201ENST00000318006 RWDD1Q9H446 243 aaPredicted RBP14.48□□□□□ -0.09
VPS39-201ENST00000318006 DNAJC5BQ9UF47 199 aa14.48□□□□□ -0.09
VPS39-201ENST00000318006 AQRO60306 1485 aaKnown RBP eCLIP14.47□□□□□ -0.093e-6■■■■□ 25.1
VPS39-201ENST00000318006 MYOM3Q5VTT5 1437 aa14.47□□□□□ -0.09
VPS39-201ENST00000318006 PDE4AP27815 886 aa14.47□□□□□ -0.09
VPS39-201ENST00000318006 PHLDB1Q86UU1 1377 aa14.46□□□□□ -0.09
VPS39-201ENST00000318006 LRRC9Q6ZRR7 1453 aa14.46□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 100 ms