RNA–Protein interactions for RNA: ENST00000312413.10

CLCN6-201, Transcript of chloride voltage-gated channel 6, humanhuman

TSL 2 BASIC

Gene CLCN6, Length 5,631 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN6-201ENST00000312413 RCAN3Q9UKA8 241 aa17.33■□□□□ 0.36
CLCN6-201ENST00000312413 CCNB3Q8WWL7 1395 aa17.32■□□□□ 0.36
CLCN6-201ENST00000312413 TNNT3P45378 269 aaPredicted RBP17.32■□□□□ 0.36
CLCN6-201ENST00000312413 SYAP1Q96A49 352 aaPredicted RBP17.32■□□□□ 0.36
CLCN6-201ENST00000312413 RWDD1Q9H446 243 aaPredicted RBP17.3■□□□□ 0.36
CLCN6-201ENST00000312413 IPO8O15397 1037 aaKnown RBP17.29■□□□□ 0.36
CLCN6-201ENST00000312413 DCAF11Q8TEB1 546 aa17.29■□□□□ 0.36
CLCN6-201ENST00000312413 HSPA5P11021 654 aaKnown RBP17.29■□□□□ 0.36
CLCN6-201ENST00000312413 WRNQ14191 1432 aaPredicted RBP eCLIP17.28■□□□□ 0.365e-6■■■■■ 46
CLCN6-201ENST00000312413 KIAA1211Q6ZU35 1233 aa17.27■□□□□ 0.36
CLCN6-201ENST00000312413 MORC1Q86VD1 984 aa17.27■□□□□ 0.36
CLCN6-201ENST00000312413 GOLGA2Q08379 1002 aa17.27■□□□□ 0.35
CLCN6-201ENST00000312413 KTN1Q86UP2 1357 aaKnown RBP17.26■□□□□ 0.35
CLCN6-201ENST00000312413 HTATSF1O43719 755 aaKnown RBP17.25■□□□□ 0.35
CLCN6-201ENST00000312413 KIF27Q86VH2 1401 aa17.25■□□□□ 0.35
CLCN6-201ENST00000312413 GNL2Q13823 731 aaKnown RBP17.25■□□□□ 0.35
CLCN6-201ENST00000312413 APBB1O00213 710 aa17.23■□□□□ 0.35
CLCN6-201ENST00000312413 CALD1Q05682 793 aaKnown RBP17.22■□□□□ 0.35
CLCN6-201ENST00000312413 LMOD2Q6P5Q4 547 aa17.22■□□□□ 0.35
CLCN6-201ENST00000312413 PMFBP1Q8TBY8 1022 aa17.21■□□□□ 0.35
CLCN6-201ENST00000312413 HSP90AA2PQ14568 343 aaPredicted RBP17.21■□□□□ 0.35
CLCN6-201ENST00000312413 USP35Q9P2H5 1018 aa17.21■□□□□ 0.35
CLCN6-201ENST00000312413 BAZ1BQ9UIG0 1483 aaKnown RBP17.2■□□□□ 0.34
CLCN6-201ENST00000312413 MFAP1P55081 439 aaKnown RBP17.2■□□□□ 0.34
CLCN6-201ENST00000312413 ITPRIPQ8IWB1 547 aa17.2■□□□□ 0.34
CLCN6-201ENST00000312413 NPHP1O15259 732 aa17.19■□□□□ 0.34
CLCN6-201ENST00000312413 RALBP1Q15311 655 aa17.19■□□□□ 0.34
CLCN6-201ENST00000312413 RSPH6AQ9H0K4 717 aa17.19■□□□□ 0.34
CLCN6-201ENST00000312413 TPM4P67936 248 aa17.19■□□□□ 0.34
CLCN6-201ENST00000312413 SETD5Q9C0A6 1442 aa17.18■□□□□ 0.34
CLCN6-201ENST00000312413 GOLGA6L1Q8N7Z2 621 aa17.17■□□□□ 0.34
CLCN6-201ENST00000312413 SRPK2P78362 688 aaKnown RBP17.16■□□□□ 0.34
CLCN6-201ENST00000312413 RTF1Q92541 710 aaKnown RBP17.16■□□□□ 0.34
CLCN6-201ENST00000312413 NOC3LQ8WTT2 800 aaKnown RBP17.16■□□□□ 0.34
CLCN6-201ENST00000312413 FHAD1B1AJZ9 1412 aa17.16■□□□□ 0.34
CLCN6-201ENST00000312413 NCBP3Q53F19 620 aaKnown RBP17.14■□□□□ 0.33
CLCN6-201ENST00000312413 CLSTN1O94985 981 aa17.14■□□□□ 0.33
CLCN6-201ENST00000312413 CSPP1Q1MSJ5 1256 aa17.14■□□□□ 0.33
CLCN6-201ENST00000312413 U2AF1L5P0DN76 240 aaPredicted RBP17.12■□□□□ 0.33
CLCN6-201ENST00000312413 U2AF1Q01081 240 aaKnown RBP eCLIP17.12■□□□□ 0.33
CLCN6-201ENST00000312413 BAZ1AQ9NRL2 1556 aaPredicted RBP17.12■□□□□ 0.33
CLCN6-201ENST00000312413 PHF14O94880 888 aa17.11■□□□□ 0.33
CLCN6-201ENST00000312413 DDX11L8A8MPP1 907 aa17.11■□□□□ 0.33
CLCN6-201ENST00000312413 CCDC34Q96HJ3 373 aa17.11■□□□□ 0.33
CLCN6-201ENST00000312413 PDE3BQ13370 1112 aa17.1■□□□□ 0.33
CLCN6-201ENST00000312413 SOX12O15370 315 aa17.1■□□□□ 0.33
CLCN6-201ENST00000312413 GSE1Q14687 1217 aa17.09■□□□□ 0.33
CLCN6-201ENST00000312413 VSIG10Q8N0Z9 540 aa17.09■□□□□ 0.33
CLCN6-201ENST00000312413 KANK1Q14678 1352 aa17.09■□□□□ 0.33
CLCN6-201ENST00000312413 FOXD4L1Q9NU39 408 aa17.08■□□□□ 0.32
CLCN6-201ENST00000312413 SMC4Q9NTJ3 1288 aa17.07■□□□□ 0.32
CLCN6-201ENST00000312413 PKD2Q13563 968 aa17.06■□□□□ 0.32
CLCN6-201ENST00000312413 ISY1Q9ULR0 285 aaKnown RBP17.06■□□□□ 0.32
CLCN6-201ENST00000312413 HDGFL2Q7Z4V5 671 aaPredicted RBP17.06■□□□□ 0.32
CLCN6-201ENST00000312413 HMMRO75330 724 aa17.06■□□□□ 0.32
CLCN6-201ENST00000312413 ST18O60284 1047 aa17.06■□□□□ 0.32
CLCN6-201ENST00000312413 SAFB2Q14151 953 aaKnown RBP eCLIP17.05■□□□□ 0.32
CLCN6-201ENST00000312413 TRIM6-TRIM34B2RNG4 842 aa17.05■□□□□ 0.32
CLCN6-201ENST00000312413 HSP90B1P14625 803 aaKnown RBP17.05■□□□□ 0.32
CLCN6-201ENST00000312413 A0A0U1RQG5 324 aaPredicted RBP17.04■□□□□ 0.32
CLCN6-201ENST00000312413 ERCC6Q03468 1493 aa17.03■□□□□ 0.32
CLCN6-201ENST00000312413 CLUAP1Q96AJ1 413 aa17.03■□□□□ 0.32
CLCN6-201ENST00000312413 CENPJQ9HC77 1338 aaPredicted RBP17.03■□□□□ 0.32
CLCN6-201ENST00000312413 ROCK2O75116 1388 aaKnown RBP17.03■□□□□ 0.32
CLCN6-201ENST00000312413 PDE4AP27815 886 aa17.02■□□□□ 0.32
CLCN6-201ENST00000312413 NLRP13Q86W25 1043 aa17.02■□□□□ 0.32
CLCN6-201ENST00000312413 GPATCH3Q96I76 525 aa17.02■□□□□ 0.32
CLCN6-201ENST00000312413 CHMP4AQ9BY43 222 aa17.02■□□□□ 0.32
CLCN6-201ENST00000312413 SKOR2Q2VWA4 1001 aaPredicted RBP17.02■□□□□ 0.32
CLCN6-201ENST00000312413 NOL8Q76FK4 1167 aaKnown RBP17.02■□□□□ 0.31
CLCN6-201ENST00000312413 STK31Q9BXU1 1019 aa17.02■□□□□ 0.31
CLCN6-201ENST00000312413 TPM3P06753 285 aa17.01■□□□□ 0.31
CLCN6-201ENST00000312413 FOXD1Q16676 465 aa17.01■□□□□ 0.31
CLCN6-201ENST00000312413 DDX49Q9Y6V7 483 aaKnown RBP17.01■□□□□ 0.31
CLCN6-201ENST00000312413 VPS8Q8N3P4 1428 aa17.01■□□□□ 0.31
CLCN6-201ENST00000312413 HDGFP51858 240 aaKnown RBP17.01■□□□□ 0.31
CLCN6-201ENST00000312413 RAB3GAP2Q9H2M9 1393 aa17.01■□□□□ 0.31
CLCN6-201ENST00000312413 FAM161AQ3B820 660 aa17.01■□□□□ 0.31
CLCN6-201ENST00000312413 ARHGAP35Q9NRY4 1499 aa17.01■□□□□ 0.31
CLCN6-201ENST00000312413 CENPQQ7L2Z9 268 aaPredicted RBP17■□□□□ 0.31
CLCN6-201ENST00000312413 HDAC5Q9UQL6 1122 aa17■□□□□ 0.31
CLCN6-201ENST00000312413 KIF16BQ96L93 1317 aa16.99■□□□□ 0.31
CLCN6-201ENST00000312413 MPHOSPH9Q99550 1183 aa16.98■□□□□ 0.31
CLCN6-201ENST00000312413 FANCIQ9NVI1 1328 aa16.98■□□□□ 0.31
CLCN6-201ENST00000312413 KIF3AQ9Y496 699 aa16.98■□□□□ 0.31
CLCN6-201ENST00000312413 SLC4A3P48751 1232 aa16.97■□□□□ 0.31
CLCN6-201ENST00000312413 SETQ01105 290 aaPredicted RBP16.96■□□□□ 0.31
CLCN6-201ENST00000312413 FOXD4L5Q5VV16 416 aaPredicted RBP16.96■□□□□ 0.31
CLCN6-201ENST00000312413 FOXD4L4Q8WXT5 416 aaPredicted RBP16.96■□□□□ 0.31
CLCN6-201ENST00000312413 SPAG9O60271 1321 aaKnown RBP16.96■□□□□ 0.31
CLCN6-201ENST00000312413 PHLDB1Q86UU1 1377 aa16.96■□□□□ 0.31
CLCN6-201ENST00000312413 STK26Q9P289 416 aa16.96■□□□□ 0.31
CLCN6-201ENST00000312413 GORABQ5T7V8 394 aa16.95■□□□□ 0.3
CLCN6-201ENST00000312413 SF3A1Q15459 793 aaKnown RBP16.95■□□□□ 0.3
CLCN6-201ENST00000312413 KANK4Q5T7N3 995 aaPredicted RBP16.95■□□□□ 0.3
CLCN6-201ENST00000312413 CCDC146Q8IYE0 955 aa16.95■□□□□ 0.3
CLCN6-201ENST00000312413 RASSF8Q8NHQ8 419 aa16.94■□□□□ 0.3
CLCN6-201ENST00000312413 ATP6V1DQ9Y5K8 247 aa16.94■□□□□ 0.3
CLCN6-201ENST00000312413 CREBRFQ8IUR6 639 aa16.93■□□□□ 0.3
CLCN6-201ENST00000312413 CARMIL1Q5VZK9 1371 aa16.93■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms