RNA–Protein interactions for RNA: ENST00000309469.8

ATG4D-201, Transcript of autophagy related 4D cysteine peptidase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene ATG4D, Length 1,949 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4D-201ENST00000309469 ROCK1Q13464 1354 aa31.06■■■□□ 2.56
ATG4D-201ENST00000309469 ZNF316A6NFI3 1004 aaPredicted RBP31.06■■■□□ 2.56
ATG4D-201ENST00000309469 ZNF777Q9ULD5 760 aaPredicted RBP31.04■■■□□ 2.56
ATG4D-201ENST00000309469 UHRF1BP1LA0JNW5 1464 aa31.04■■■□□ 2.56
ATG4D-201ENST00000309469 CDC42BPAQ5VT25 1732 aa31.02■■■□□ 2.56
ATG4D-201ENST00000309469 SIN3AQ96ST3 1273 aa30.96■■■□□ 2.55
ATG4D-201ENST00000309469 OSCARQ8IYS5 282 aa30.95■■■□□ 2.55
ATG4D-201ENST00000309469 KDM6BO15054 1643 aa30.94■■■□□ 2.54
ATG4D-201ENST00000309469 KDM5BQ9UGL1 1544 aa30.93■■■□□ 2.54
ATG4D-201ENST00000309469 NEUROD1Q13562 356 aa30.91■■■□□ 2.54
ATG4D-201ENST00000309469 ACIN1Q9UKV3 1341 aaKnown RBP30.9■■■□□ 2.54
ATG4D-201ENST00000309469 ZCCHC11Q5TAX3 1644 aaKnown RBP30.9■■■□□ 2.54
ATG4D-201ENST00000309469 TIMELESSQ9UNS1 1208 aa30.89■■■□□ 2.54
ATG4D-201ENST00000309469 TRIM52Q96A61 297 aa30.88■■■□□ 2.53
ATG4D-201ENST00000309469 DIEXFQ68CQ4 756 aaKnown RBP30.86■■■□□ 2.53
ATG4D-201ENST00000309469 NCOA1Q15788 1441 aa30.86■■■□□ 2.53
ATG4D-201ENST00000309469 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP30.86■■■□□ 2.53
ATG4D-201ENST00000309469 ADGRL2O95490 1459 aa30.86■■■□□ 2.53
ATG4D-201ENST00000309469 CROCC2H7BZ55 1655 aa30.86■■■□□ 2.53
ATG4D-201ENST00000309469 PREX2Q70Z35 1606 aa30.85■■■□□ 2.53
ATG4D-201ENST00000309469 ADGBQ8N7X0 1667 aa30.83■■■□□ 2.53
ATG4D-201ENST00000309469 TTC37Q6PGP7 1564 aa30.82■■■□□ 2.53
ATG4D-201ENST00000309469 KCNH8Q96L42 1107 aa30.82■■■□□ 2.52
ATG4D-201ENST00000309469 CDC42BPBQ9Y5S2 1711 aa30.82■■■□□ 2.52
ATG4D-201ENST00000309469 SHANK2Q9UPX8 1470 aa30.81■■■□□ 2.52
ATG4D-201ENST00000309469 ANKRD30AQ9BXX3 1397 aa30.81■■■□□ 2.52
ATG4D-201ENST00000309469 MBD5Q9P267 1494 aa30.78■■■□□ 2.52
ATG4D-201ENST00000309469 HNRNPMP52272 730 aaKnown RBP eCLIP30.78■■■□□ 2.52
ATG4D-201ENST00000309469 MPHOSPH9Q99550 1183 aa30.78■■■□□ 2.52
ATG4D-201ENST00000309469 ARHGEF5Q12774 1597 aa30.78■■■□□ 2.52
ATG4D-201ENST00000309469 SAMD9LQ8IVG5 1584 aa30.78■■■□□ 2.52
ATG4D-201ENST00000309469 DENND4BO75064 1496 aaPredicted RBP30.77■■■□□ 2.52
ATG4D-201ENST00000309469 TSPY4P0CV99 314 aa30.76■■■□□ 2.51
ATG4D-201ENST00000309469 TSPY10P0CW01 314 aa30.76■■■□□ 2.51
ATG4D-201ENST00000309469 C9orf84Q5VXU9 1444 aa30.76■■■□□ 2.51
ATG4D-201ENST00000309469 ARHGAP5Q13017 1502 aa30.74■■■□□ 2.51
ATG4D-201ENST00000309469 RSPH4AQ5TD94 716 aa30.74■■■□□ 2.51
ATG4D-201ENST00000309469 MYO5CQ9NQX4 1742 aa30.71■■■□□ 2.51
ATG4D-201ENST00000309469 CCDC141Q6ZP82 1450 aa30.69■■■□□ 2.5
ATG4D-201ENST00000309469 PLCH2O75038 1416 aa30.69■■■□□ 2.5
ATG4D-201ENST00000309469 TONSLQ96HA7 1378 aa30.68■■■□□ 2.5
ATG4D-201ENST00000309469 PPP1R15AO75807 674 aaPredicted RBP30.67■■■□□ 2.5
ATG4D-201ENST00000309469 ANKRD50Q9ULJ7 1429 aa30.66■■■□□ 2.5
ATG4D-201ENST00000309469 PLEKHH2Q8IVE3 1493 aa30.65■■■□□ 2.5
ATG4D-201ENST00000309469 KIAA1107Q9UPP5 1409 aa30.65■■■□□ 2.5
ATG4D-201ENST00000309469 WDR7Q9Y4E6 1490 aa30.64■■■□□ 2.49
ATG4D-201ENST00000309469 SYCP2Q9BX26 1530 aa30.63■■■□□ 2.49
ATG4D-201ENST00000309469 EFCAB2Q5VUJ9 269 aa30.61■■■□□ 2.49
ATG4D-201ENST00000309469 SLC4A1APQ9BWU0 796 aaKnown RBP30.61■■■□□ 2.49
ATG4D-201ENST00000309469 KIF15Q9NS87 1388 aa30.59■■■□□ 2.49
ATG4D-201ENST00000309469 PZPP20742 1482 aa30.58■■■□□ 2.49
ATG4D-201ENST00000309469 FOXD1Q16676 465 aa30.57■■■□□ 2.48
ATG4D-201ENST00000309469 ANKRD30BQ9BXX2 1392 aa30.55■■■□□ 2.48
ATG4D-201ENST00000309469 MAST1Q9Y2H9 1570 aa30.55■■■□□ 2.48
ATG4D-201ENST00000309469 ARAP3Q8WWN8 1544 aa30.53■■■□□ 2.48
ATG4D-201ENST00000309469 ARHGEF12Q9NZN5 1544 aa30.53■■■□□ 2.48
ATG4D-201ENST00000309469 ASXL2Q76L83 1435 aa30.53■■■□□ 2.48
ATG4D-201ENST00000309469 NPM1P06748 294 aaKnown RBP eCLIP30.51■■■□□ 2.48
ATG4D-201ENST00000309469 ABCC1P33527 1531 aa30.48■■■□□ 2.47
ATG4D-201ENST00000309469 ABCA9Q8IUA7 1624 aa30.46■■■□□ 2.47
ATG4D-201ENST00000309469 NUP155O75694 1391 aa30.46■■■□□ 2.47
ATG4D-201ENST00000309469 RPRD2Q5VT52 1461 aaKnown RBP30.43■■■□□ 2.46
ATG4D-201ENST00000309469 KDM5DQ9BY66 1539 aa30.43■■■□□ 2.46
ATG4D-201ENST00000309469 PKD2Q13563 968 aa30.42■■■□□ 2.46
ATG4D-201ENST00000309469 PLXNC1O60486 1568 aa30.41■■■□□ 2.46
ATG4D-201ENST00000309469 TRAPPC8Q9Y2L5 1435 aa30.4■■■□□ 2.46
ATG4D-201ENST00000309469 FANCAO15360 1455 aa30.37■■■□□ 2.45
ATG4D-201ENST00000309469 L3MBTL2Q969R5 705 aa30.36■■■□□ 2.45
ATG4D-201ENST00000309469 DUOX2Q9NRD8 1548 aa30.33■■■□□ 2.45
ATG4D-201ENST00000309469 MIER1Q8N108 512 aa30.33■■■□□ 2.45
ATG4D-201ENST00000309469 AFAP1Q8N556 730 aa30.3■■■□□ 2.44
ATG4D-201ENST00000309469 RTEL1-TNFRSF6BF6WH68 1400 aa30.3■■■□□ 2.44
ATG4D-201ENST00000309469 SPAG9O60271 1321 aaKnown RBP30.3■■■□□ 2.44
ATG4D-201ENST00000309469 ERBINQ96RT1 1412 aa30.28■■■□□ 2.44
ATG4D-201ENST00000309469 TEX14Q8IWB6 1497 aa30.28■■■□□ 2.44
ATG4D-201ENST00000309469 UNC13BO14795 1591 aa30.27■■■□□ 2.44
ATG4D-201ENST00000309469 FAM135AQ9P2D6 1515 aa30.26■■■□□ 2.44
ATG4D-201ENST00000309469 ADGRL1O94910 1474 aa30.25■■■□□ 2.43
ATG4D-201ENST00000309469 SCAPERQ9BY12 1400 aa30.24■■■□□ 2.43
ATG4D-201ENST00000309469 ZFYVE16Q7Z3T8 1539 aa30.22■■■□□ 2.43
ATG4D-201ENST00000309469 CD109Q6YHK3 1445 aa30.21■■■□□ 2.43
ATG4D-201ENST00000309469 HIRIP3Q9BW71 556 aaPredicted RBP30.2■■■□□ 2.43
ATG4D-201ENST00000309469 GRWD1Q9BQ67 446 aaKnown RBP eCLIP30.2■■■□□ 2.42
ATG4D-201ENST00000309469 CYB5RLQ6IPT4 315 aa30.18■■■□□ 2.42
ATG4D-201ENST00000309469 MAGI2Q86UL8 1455 aa30.16■■■□□ 2.42
ATG4D-201ENST00000309469 IQGAP3Q86VI3 1631 aa30.15■■■□□ 2.42
ATG4D-201ENST00000309469 INO80Q9ULG1 1556 aaPredicted RBP30.14■■■□□ 2.42
ATG4D-201ENST00000309469 NBPF8Q3BBV2 869 aa30.14■■■□□ 2.42
ATG4D-201ENST00000309469 ATP7AQ04656 1500 aa30.14■■■□□ 2.42
ATG4D-201ENST00000309469 RIMBP3CA6NJZ7 1639 aa30.14■■■□□ 2.41
ATG4D-201ENST00000309469 RIMBP3BA6NNM3 1639 aa30.14■■■□□ 2.41
ATG4D-201ENST00000309469 RIMBP3Q9UFD9 1639 aa30.14■■■□□ 2.41
ATG4D-201ENST00000309469 CFAP74Q9C0B2 1584 aa30.1■■■□□ 2.41
ATG4D-201ENST00000309469 DDX10Q13206 875 aaKnown RBP30.07■■■□□ 2.4
ATG4D-201ENST00000309469 MYT1LQ9UL68 1186 aa30.07■■■□□ 2.4
ATG4D-201ENST00000309469 ZNF518AQ6AHZ1 1483 aa30.06■■■□□ 2.4
ATG4D-201ENST00000309469 HSPA5P11021 654 aaKnown RBP30.06■■■□□ 2.4
ATG4D-201ENST00000309469 EIF4G2P78344 907 aaKnown RBP eCLIP30.06■■■□□ 2.4
ATG4D-201ENST00000309469 DHX29Q7Z478 1369 aaKnown RBP30.02■■■□□ 2.4
ATG4D-201ENST00000309469 PLA2R1Q13018 1463 aa30.02■■■□□ 2.4
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms