RNA–Protein interactions for RNA: ENST00000308077.9

PTCD2-201, Transcript of pentatricopeptide repeat domain 2, humanhuman

TSL 1 (best)

Gene PTCD2, Length 2,195 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD2-201ENST00000308077 ADAMTSL3P82987 1691 aa10.6□□□□□ -0.71
PTCD2-201ENST00000308077 KIF14Q15058 1648 aa10.6□□□□□ -0.71
PTCD2-201ENST00000308077 MYOM3Q5VTT5 1437 aa10.59□□□□□ -0.71
PTCD2-201ENST00000308077 FGD6Q6ZV73 1430 aa10.59□□□□□ -0.71
PTCD2-201ENST00000308077 PTPRTO14522 1441 aa10.59□□□□□ -0.71
PTCD2-201ENST00000308077 ZCCHC11Q5TAX3 1644 aaKnown RBP10.59□□□□□ -0.71
PTCD2-201ENST00000308077 CDK11AQ9UQ88 783 aaPredicted RBP10.59□□□□□ -0.71
PTCD2-201ENST00000308077 PPRC1Q5VV67 1664 aaKnown RBP10.58□□□□□ -0.72
PTCD2-201ENST00000308077 KDM5BQ9UGL1 1544 aa10.57□□□□□ -0.72
PTCD2-201ENST00000308077 PTPN23Q9H3S7 1636 aa10.56□□□□□ -0.72
PTCD2-201ENST00000308077 DMRT2Q9Y5R5 561 aa10.55□□□□□ -0.72
PTCD2-201ENST00000308077 PLEKHD1A6NEE1 506 aa10.55□□□□□ -0.72
PTCD2-201ENST00000308077 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP10.55□□□□□ -0.72
PTCD2-201ENST00000308077 FAM50AQ14320 339 aaKnown RBP10.54□□□□□ -0.72
PTCD2-201ENST00000308077 TCOF1Q13428 1488 aaKnown RBP10.54□□□□□ -0.72
PTCD2-201ENST00000308077 ITSN2Q9NZM3 1697 aa10.54□□□□□ -0.72
PTCD2-201ENST00000308077 CDC42BPAQ5VT25 1732 aa10.53□□□□□ -0.72
PTCD2-201ENST00000308077 MIA2Q96PC5 1412 aa10.53□□□□□ -0.72
PTCD2-201ENST00000308077 GPATCH8Q9UKJ3 1502 aaKnown RBP10.52□□□□□ -0.72
PTCD2-201ENST00000308077 COL17A1Q9UMD9 1497 aaPredicted RBP10.51□□□□□ -0.73
PTCD2-201ENST00000308077 ITGAEP38570 1179 aa10.51□□□□□ -0.73
PTCD2-201ENST00000308077 TTC37Q6PGP7 1564 aa10.51□□□□□ -0.73
PTCD2-201ENST00000308077 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP10.5□□□□□ -0.73
PTCD2-201ENST00000308077 PTPRKQ15262 1439 aa10.49□□□□□ -0.73
PTCD2-201ENST00000308077 CDC42BPBQ9Y5S2 1711 aa10.49□□□□□ -0.73
PTCD2-201ENST00000308077 PREX2Q70Z35 1606 aa10.48□□□□□ -0.73
PTCD2-201ENST00000308077 HRCP23327 699 aa10.48□□□□□ -0.73
PTCD2-201ENST00000308077 HSPA2P54652 639 aa10.48□□□□□ -0.73
PTCD2-201ENST00000308077 CAMSAP2Q08AD1 1489 aa10.47□□□□□ -0.73
PTCD2-201ENST00000308077 NPM1P06748 294 aaKnown RBP eCLIP10.47□□□□□ -0.73
PTCD2-201ENST00000308077 ZNF644Q9H582 1327 aaPredicted RBP10.47□□□□□ -0.73
PTCD2-201ENST00000308077 WDR7Q9Y4E6 1490 aa10.47□□□□□ -0.73
PTCD2-201ENST00000308077 GLI2P10070 1586 aa10.47□□□□□ -0.73
PTCD2-201ENST00000308077 MYO5CQ9NQX4 1742 aa10.46□□□□□ -0.74
PTCD2-201ENST00000308077 DNMT1P26358 1616 aaKnown RBP10.46□□□□□ -0.74
PTCD2-201ENST00000308077 CFDP1Q9UEE9 299 aaPredicted RBP10.46□□□□□ -0.74
PTCD2-201ENST00000308077 ASXL2Q76L83 1435 aa10.45□□□□□ -0.74
PTCD2-201ENST00000308077 KCNH8Q96L42 1107 aa10.45□□□□□ -0.74
PTCD2-201ENST00000308077 SAMD9LQ8IVG5 1584 aa10.44□□□□□ -0.74
PTCD2-201ENST00000308077 CROCC2H7BZ55 1655 aa10.43□□□□□ -0.74
PTCD2-201ENST00000308077 DAPK1P53355 1430 aa10.43□□□□□ -0.74
PTCD2-201ENST00000308077 YEATS2Q9ULM3 1422 aa10.43□□□□□ -0.74
PTCD2-201ENST00000308077 ABCC5O15440 1437 aa10.43□□□□□ -0.74
PTCD2-201ENST00000308077 ZNF777Q9ULD5 760 aaPredicted RBP10.42□□□□□ -0.74
PTCD2-201ENST00000308077 ABCA9Q8IUA7 1624 aa10.42□□□□□ -0.74
PTCD2-201ENST00000308077 SETD5Q9C0A6 1442 aa10.42□□□□□ -0.74
PTCD2-201ENST00000308077 RAB3GAP2Q9H2M9 1393 aa10.42□□□□□ -0.74
PTCD2-201ENST00000308077 ARHGAP5Q13017 1502 aa10.41□□□□□ -0.74
PTCD2-201ENST00000308077 HFM1A2PYH4 1435 aa10.41□□□□□ -0.74
PTCD2-201ENST00000308077 GCC2Q8IWJ2 1684 aa10.41□□□□□ -0.74
PTCD2-201ENST00000308077 POTEDQ86YR6 584 aa10.41□□□□□ -0.74
PTCD2-201ENST00000308077 CCER1Q8TC90 406 aaPredicted RBP10.41□□□□□ -0.74
PTCD2-201ENST00000308077 PLCH2O75038 1416 aa10.4□□□□□ -0.74
PTCD2-201ENST00000308077 STRCQ7RTU9 1775 aa10.4□□□□□ -0.74
PTCD2-201ENST00000308077 RGS17Q9UGC6 210 aaPredicted RBP10.4□□□□□ -0.74
PTCD2-201ENST00000308077 NAIPQ13075 1403 aa10.4□□□□□ -0.75
PTCD2-201ENST00000308077 UPF1Q92900 1129 aaKnown RBP eCLIP10.39□□□□□ -0.75
PTCD2-201ENST00000308077 CHIC2Q9UKJ5 165 aa10.39□□□□□ -0.75
PTCD2-201ENST00000308077 ARHGEF5Q12774 1597 aa10.39□□□□□ -0.75
PTCD2-201ENST00000308077 ADGBQ8N7X0 1667 aa10.39□□□□□ -0.75
PTCD2-201ENST00000308077 AKNAQ7Z591 1439 aa10.39□□□□□ -0.75
PTCD2-201ENST00000308077 MBD5Q9P267 1494 aa10.39□□□□□ -0.75
PTCD2-201ENST00000308077 UBAP1LF5GYI3 381 aa10.39□□□□□ -0.75
PTCD2-201ENST00000308077 HSPA1LP34931 641 aa10.39□□□□□ -0.75
PTCD2-201ENST00000308077 ARAP3Q8WWN8 1544 aa10.39□□□□□ -0.75
PTCD2-201ENST00000308077 TEX14Q8IWB6 1497 aa10.38□□□□□ -0.75
PTCD2-201ENST00000308077 SETD1AO15047 1707 aaKnown RBP10.38□□□□□ -0.75
PTCD2-201ENST00000308077 SYCP2Q9BX26 1530 aa10.38□□□□□ -0.75
PTCD2-201ENST00000308077 DHX57Q6P158 1386 aaKnown RBP10.38□□□□□ -0.75
PTCD2-201ENST00000308077 ROCK1Q13464 1354 aa10.37□□□□□ -0.75
PTCD2-201ENST00000308077 RRP7BPQ9NSQ0 103 aa10.36□□□□□ -0.75
PTCD2-201ENST00000308077 SHANK2Q9UPX8 1470 aa10.36□□□□□ -0.75
PTCD2-201ENST00000308077 ABCC1P33527 1531 aa10.36□□□□□ -0.75
PTCD2-201ENST00000308077 ARHGEF12Q9NZN5 1544 aa10.36□□□□□ -0.75
PTCD2-201ENST00000308077 HNRNPMP52272 730 aaKnown RBP eCLIP10.36□□□□□ -0.75
PTCD2-201ENST00000308077 ADGRL2O95490 1459 aa10.36□□□□□ -0.75
PTCD2-201ENST00000308077 CCDC141Q6ZP82 1450 aa10.35□□□□□ -0.75
PTCD2-201ENST00000308077 PLEKHH2Q8IVE3 1493 aa10.35□□□□□ -0.75
PTCD2-201ENST00000308077 KIAA1107Q9UPP5 1409 aa10.34□□□□□ -0.75
PTCD2-201ENST00000308077 BCORL1Q5H9F3 1711 aa10.34□□□□□ -0.75
PTCD2-201ENST00000308077 C9orf84Q5VXU9 1444 aa10.34□□□□□ -0.75
PTCD2-201ENST00000308077 MADDQ8WXG6 1647 aa10.34□□□□□ -0.75
PTCD2-201ENST00000308077 EFCAB2Q5VUJ9 269 aa10.33□□□□□ -0.76
PTCD2-201ENST00000308077 NCOA1Q15788 1441 aa10.33□□□□□ -0.76
PTCD2-201ENST00000308077 FANCAO15360 1455 aa10.33□□□□□ -0.76
PTCD2-201ENST00000308077 ZEB1P37275 1124 aaPredicted RBP10.33□□□□□ -0.76
PTCD2-201ENST00000308077 MAST1Q9Y2H9 1570 aa10.33□□□□□ -0.76
PTCD2-201ENST00000308077 RBM33Q96EV2 1170 aaKnown RBP10.32□□□□□ -0.76
PTCD2-201ENST00000308077 MAP3K4Q9Y6R4 1608 aa10.32□□□□□ -0.76
PTCD2-201ENST00000308077 CD109Q6YHK3 1445 aa10.31□□□□□ -0.76
PTCD2-201ENST00000308077 TRAPPC8Q9Y2L5 1435 aa10.31□□□□□ -0.76
PTCD2-201ENST00000308077 ANKRD30AQ9BXX3 1397 aa10.31□□□□□ -0.76
PTCD2-201ENST00000308077 RSPH4AQ5TD94 716 aa10.3□□□□□ -0.76
PTCD2-201ENST00000308077 TSPY4P0CV99 314 aa10.29□□□□□ -0.76
PTCD2-201ENST00000308077 TSPY10P0CW01 314 aa10.29□□□□□ -0.76
PTCD2-201ENST00000308077 CFAP74Q9C0B2 1584 aa10.29□□□□□ -0.76
PTCD2-201ENST00000308077 PLXNC1O60486 1568 aa10.29□□□□□ -0.76
PTCD2-201ENST00000308077 CLSPNQ9HAW4 1339 aa10.28□□□□□ -0.76
PTCD2-201ENST00000308077 KIF15Q9NS87 1388 aa10.27□□□□□ -0.76
PTCD2-201ENST00000308077 FOXD1Q16676 465 aa10.27□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms