RNA–Protein interactions for RNA: ENST00000306014.9

DDX54-201, Transcript of DEAD-box helicase 54, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene DDX54, Length 4,377 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX54-201ENST00000306014 RCAN3Q9UKA8 241 aa17.4■□□□□ 0.38
DDX54-201ENST00000306014 ERICH3Q5RHP9 1530 aa17.39■□□□□ 0.38
DDX54-201ENST00000306014 NEUROD2Q15784 382 aa17.38■□□□□ 0.37
DDX54-201ENST00000306014 CUX1P39880 1505 aa17.37■□□□□ 0.37
DDX54-201ENST00000306014 LAMC3Q9Y6N6 1575 aa17.37■□□□□ 0.37
DDX54-201ENST00000306014 FGD6Q6ZV73 1430 aa17.36■□□□□ 0.37
DDX54-201ENST00000306014 ZBED9Q6R2W3 1325 aa17.36■□□□□ 0.37
DDX54-201ENST00000306014 CDCA8Q53HL2 280 aa17.35■□□□□ 0.37
DDX54-201ENST00000306014 POLA1P09884 1462 aaPredicted RBP17.35■□□□□ 0.37
DDX54-201ENST00000306014 NUP155O75694 1391 aa17.35■□□□□ 0.37
DDX54-201ENST00000306014 SENP3Q9H4L4 574 aaPredicted RBP17.35■□□□□ 0.37
DDX54-201ENST00000306014 IPO9Q96P70 1041 aaKnown RBP17.35■□□□□ 0.37
DDX54-201ENST00000306014 FANCIQ9NVI1 1328 aa17.34■□□□□ 0.37
DDX54-201ENST00000306014 BECN1Q14457 450 aa17.34■□□□□ 0.37
DDX54-201ENST00000306014 TMF1P82094 1093 aa17.34■□□□□ 0.37
DDX54-201ENST00000306014 TOP2BQ02880 1626 aa17.34■□□□□ 0.37
DDX54-201ENST00000306014 SLC24A1O60721 1099 aa17.33■□□□□ 0.36
DDX54-201ENST00000306014 OSCARQ8IYS5 282 aa17.33■□□□□ 0.36
DDX54-201ENST00000306014 WASHC2AQ641Q2 1341 aa17.33■□□□□ 0.36
DDX54-201ENST00000306014 KTN1Q86UP2 1357 aaKnown RBP17.32■□□□□ 0.36
DDX54-201ENST00000306014 UACAQ9BZF9 1416 aa17.32■□□□□ 0.36
DDX54-201ENST00000306014 RALBP1Q15311 655 aa17.32■□□□□ 0.36
DDX54-201ENST00000306014 GRIN2BQ13224 1484 aa17.31■□□□□ 0.36
DDX54-201ENST00000306014 FRAT1Q92837 279 aaPredicted RBP17.31■□□□□ 0.36
DDX54-201ENST00000306014 TCERG1O14776 1098 aaKnown RBP17.3■□□□□ 0.36
DDX54-201ENST00000306014 ROCK2O75116 1388 aaKnown RBP17.3■□□□□ 0.36
DDX54-201ENST00000306014 STAG3Q9UJ98 1225 aa17.29■□□□□ 0.36
DDX54-201ENST00000306014 IFT140Q96RY7 1462 aa17.29■□□□□ 0.36
DDX54-201ENST00000306014 PLPPR3Q6T4P5 718 aa17.29■□□□□ 0.36
DDX54-201ENST00000306014 WDR97A6NE52 1622 aa17.29■□□□□ 0.36
DDX54-201ENST00000306014 DNMBPQ6XZF7 1577 aa17.29■□□□□ 0.36
DDX54-201ENST00000306014 TNNT2P45379 298 aaPredicted RBP17.29■□□□□ 0.36
DDX54-201ENST00000306014 ANP32BQ92688 251 aaKnown RBP17.28■□□□□ 0.36
DDX54-201ENST00000306014 ST20-MTHFSA0A0A6YYL1 179 aa17.28■□□□□ 0.36
DDX54-201ENST00000306014 ANKRD30AQ9BXX3 1397 aa17.27■□□□□ 0.35
DDX54-201ENST00000306014 CCDC7Q96M83 1385 aa17.26■□□□□ 0.35
DDX54-201ENST00000306014 NLRP13Q86W25 1043 aa17.25■□□□□ 0.35
DDX54-201ENST00000306014 MYOM3Q5VTT5 1437 aa17.25■□□□□ 0.35
DDX54-201ENST00000306014 KIF7Q2M1P5 1343 aa17.25■□□□□ 0.35
DDX54-201ENST00000306014 PTPRGP23470 1445 aa17.24■□□□□ 0.35
DDX54-201ENST00000306014 USP47Q96K76 1375 aa17.23■□□□□ 0.35
DDX54-201ENST00000306014 EXOC6Q8TAG9 804 aa17.22■□□□□ 0.35
DDX54-201ENST00000306014 CASKIN1Q8WXD9 1431 aa17.22■□□□□ 0.35
DDX54-201ENST00000306014 CNTLNQ9NXG0 1405 aa17.21■□□□□ 0.35
DDX54-201ENST00000306014 CFAP53Q96M91 514 aa17.21■□□□□ 0.35
DDX54-201ENST00000306014 FTSJ3Q8IY81 847 aaKnown RBP17.21■□□□□ 0.34
DDX54-201ENST00000306014 ZNF644Q9H582 1327 aaPredicted RBP17.2■□□□□ 0.34
DDX54-201ENST00000306014 TRHP20396 242 aaPredicted RBP17.2■□□□□ 0.34
DDX54-201ENST00000306014 HNRNPMP52272 730 aaKnown RBP eCLIP17.2■□□□□ 0.34
DDX54-201ENST00000306014 TIAM1Q13009 1591 aa17.2■□□□□ 0.34
DDX54-201ENST00000306014 MYBBP1AQ9BQG0 1328 aaKnown RBP17.2■□□□□ 0.34
DDX54-201ENST00000306014 CCDC184Q52MB2 194 aa17.19■□□□□ 0.34
DDX54-201ENST00000306014 KIF15Q9NS87 1388 aa17.19■□□□□ 0.34
DDX54-201ENST00000306014 PLIN1O60240 522 aa17.19■□□□□ 0.34
DDX54-201ENST00000306014 NCOA2Q15596 1464 aa17.19■□□□□ 0.34
DDX54-201ENST00000306014 PDE3BQ13370 1112 aa17.18■□□□□ 0.34
DDX54-201ENST00000306014 PDE4AP27815 886 aa17.17■□□□□ 0.34
DDX54-201ENST00000306014 RRP1P56182 461 aaKnown RBP17.17■□□□□ 0.34
DDX54-201ENST00000306014 EFCAB2Q5VUJ9 269 aa17.17■□□□□ 0.34
DDX54-201ENST00000306014 CYB5RLQ6IPT4 315 aa17.17■□□□□ 0.34
DDX54-201ENST00000306014 ABCA10Q8WWZ4 1543 aa17.15■□□□□ 0.34
DDX54-201ENST00000306014 FYCO1Q9BQS8 1478 aa17.14■□□□□ 0.33
DDX54-201ENST00000306014 ARID4BQ4LE39 1312 aaPredicted RBP17.14■□□□□ 0.33
DDX54-201ENST00000306014 URB2Q14146 1524 aaKnown RBP17.13■□□□□ 0.33
DDX54-201ENST00000306014 MYH16Q9H6N6 1097 aa17.12■□□□□ 0.33
DDX54-201ENST00000306014 NBPF8Q3BBV2 869 aa17.11■□□□□ 0.33
DDX54-201ENST00000306014 PANK3Q9H999 370 aa17.11■□□□□ 0.33
DDX54-201ENST00000306014 SNAPC4Q5SXM2 1469 aa17.11■□□□□ 0.33
DDX54-201ENST00000306014 GOLGA2Q08379 1002 aa17.11■□□□□ 0.33
DDX54-201ENST00000306014 HFM1A2PYH4 1435 aa17.11■□□□□ 0.33
DDX54-201ENST00000306014 CCDC146Q8IYE0 955 aa17.1■□□□□ 0.33
DDX54-201ENST00000306014 SPRYD3Q8NCJ5 442 aa17.1■□□□□ 0.33
DDX54-201ENST00000306014 SLC4A3P48751 1232 aa17.1■□□□□ 0.33
DDX54-201ENST00000306014 U2SURPO15042 1029 aaKnown RBP17.09■□□□□ 0.33
DDX54-201ENST00000306014 GLIPR1L2Q4G1C9 344 aa17.09■□□□□ 0.33
DDX54-201ENST00000306014 TRIM44Q96DX7 344 aaPredicted RBP17.09■□□□□ 0.33
DDX54-201ENST00000306014 SLKQ9H2G2 1235 aaPredicted RBP17.09■□□□□ 0.33
DDX54-201ENST00000306014 MAPK8IP3Q9UPT6 1336 aa17.08■□□□□ 0.32
DDX54-201ENST00000306014 MORC1Q86VD1 984 aa17.08■□□□□ 0.32
DDX54-201ENST00000306014 CRBNQ96SW2 442 aa17.08■□□□□ 0.32
DDX54-201ENST00000306014 MSH5O43196 834 aa17.05■□□□□ 0.32
DDX54-201ENST00000306014 AKNAQ7Z591 1439 aa17.05■□□□□ 0.32
DDX54-201ENST00000306014 PAK3O75914 559 aaPredicted RBP17.03■□□□□ 0.32
DDX54-201ENST00000306014 CCDC144AA2RUR9 1427 aa17.03■□□□□ 0.32
DDX54-201ENST00000306014 NAIPQ13075 1403 aa17.03■□□□□ 0.32
DDX54-201ENST00000306014 ZBTB4Q9P1Z0 1013 aaPredicted RBP17.03■□□□□ 0.32
DDX54-201ENST00000306014 GOLGA6L22H0YM25 854 aa17.02■□□□□ 0.32
DDX54-201ENST00000306014 PRG4Q92954 1404 aaPredicted RBP17.02■□□□□ 0.32
DDX54-201ENST00000306014 NCLP19338 710 aaKnown RBP17.02■□□□□ 0.31
DDX54-201ENST00000306014 USP35Q9P2H5 1018 aa17.01■□□□□ 0.31
DDX54-201ENST00000306014 C11orf95C9JLR9 678 aaPredicted RBP17.01■□□□□ 0.31
DDX54-201ENST00000306014 SAFB2Q14151 953 aaKnown RBP eCLIP17.01■□□□□ 0.31
DDX54-201ENST00000306014 RSPH4AQ5TD94 716 aa17■□□□□ 0.31
DDX54-201ENST00000306014 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP17■□□□□ 0.31
DDX54-201ENST00000306014 NAP1L5Q96NT1 182 aaPredicted RBP17■□□□□ 0.31
DDX54-201ENST00000306014 CLUAP1Q96AJ1 413 aa17■□□□□ 0.31
DDX54-201ENST00000306014 EFCAB5A4FU69 1503 aa16.99■□□□□ 0.31
DDX54-201ENST00000306014 ZNF608Q9ULD9 1512 aaPredicted RBP16.99■□□□□ 0.31
DDX54-201ENST00000306014 MS4A1P11836 297 aa16.99■□□□□ 0.31
DDX54-201ENST00000306014 GGT6Q6P531 493 aa16.99■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms