RNA–Protein interactions for RNA: ENST00000303354.10

SCN9A-201, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 9,786 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-201ENST00000303354 PRM3Q9NNZ6 103 aa10.07□□□□□ -0.8
SCN9A-201ENST00000303354 CCDC146Q8IYE0 955 aa10.07□□□□□ -0.8
SCN9A-201ENST00000303354 WWC1Q8IX03 1113 aa10.06□□□□□ -0.8
SCN9A-201ENST00000303354 HSP90AB1P08238 724 aaKnown RBP10.06□□□□□ -0.8
SCN9A-201ENST00000303354 CDCA8Q53HL2 280 aa10.06□□□□□ -0.8
SCN9A-201ENST00000303354 TAF7LQ5H9L4 462 aa10.06□□□□□ -0.8
SCN9A-201ENST00000303354 SLC4A10Q6U841 1118 aa10.06□□□□□ -0.8
SCN9A-201ENST00000303354 RAD21O60216 631 aa10.06□□□□□ -0.8
SCN9A-201ENST00000303354 TMF1P82094 1093 aa10.05□□□□□ -0.8
SCN9A-201ENST00000303354 FBXW7Q969H0 707 aa10.05□□□□□ -0.8
SCN9A-201ENST00000303354 KANK1Q14678 1352 aa10.05□□□□□ -0.8
SCN9A-201ENST00000303354 ZNF428Q96B54 188 aa10.04□□□□□ -0.8
SCN9A-201ENST00000303354 GTF2E1P29083 439 aaPredicted RBP10.04□□□□□ -0.8
SCN9A-201ENST00000303354 PKD2Q13563 968 aa10.04□□□□□ -0.8
SCN9A-201ENST00000303354 NOL8Q76FK4 1167 aaKnown RBP10.04□□□□□ -0.8
SCN9A-201ENST00000303354 CECR2Q9BXF3 1484 aa10.04□□□□□ -0.8
SCN9A-201ENST00000303354 SAMD1Q6SPF0 538 aaPredicted RBP10.04□□□□□ -0.8
SCN9A-201ENST00000303354 NECTIN2Q92692 538 aa10.04□□□□□ -0.8
SCN9A-201ENST00000303354 TRIM44Q96DX7 344 aaPredicted RBP10.04□□□□□ -0.8
SCN9A-201ENST00000303354 FRAT2O75474 233 aaPredicted RBP10.04□□□□□ -0.8
SCN9A-201ENST00000303354 HDGFL2Q7Z4V5 671 aaPredicted RBP10.04□□□□□ -0.8
SCN9A-201ENST00000303354 TDRD9Q8NDG6 1382 aaKnown RBP10.04□□□□□ -0.8
SCN9A-201ENST00000303354 TRAK1Q9UPV9 953 aa10.03□□□□□ -0.8
SCN9A-201ENST00000303354 U2AF1L5P0DN76 240 aaPredicted RBP10.03□□□□□ -0.8
SCN9A-201ENST00000303354 U2AF1Q01081 240 aaKnown RBP eCLIP10.03□□□□□ -0.81e-8■□□□□ 11.3
SCN9A-201ENST00000303354 BECN1Q14457 450 aa10.03□□□□□ -0.8
SCN9A-201ENST00000303354 PPP1R1BQ9UD71 204 aaPredicted RBP10.03□□□□□ -0.8
SCN9A-201ENST00000303354 GORABQ5T7V8 394 aa10.02□□□□□ -0.8
SCN9A-201ENST00000303354 CEP162Q5TB80 1403 aa10.02□□□□□ -0.81
SCN9A-201ENST00000303354 CREBRFQ8IUR6 639 aa10.02□□□□□ -0.81
SCN9A-201ENST00000303354 ELL2O00472 640 aaPredicted RBP10.01□□□□□ -0.81
SCN9A-201ENST00000303354 VPS53Q5VIR6 699 aa10.01□□□□□ -0.81
SCN9A-201ENST00000303354 GNL2Q13823 731 aaKnown RBP10.01□□□□□ -0.81
SCN9A-201ENST00000303354 AMPHP49418 695 aa10.01□□□□□ -0.81
SCN9A-201ENST00000303354 EID1Q9Y6B2 187 aa10.01□□□□□ -0.81
SCN9A-201ENST00000303354 RB1CC1Q8TDY2 1594 aa10.01□□□□□ -0.81
SCN9A-201ENST00000303354 WRNQ14191 1432 aaPredicted RBP eCLIP10.01□□□□□ -0.81
SCN9A-201ENST00000303354 FOXD4L1Q9NU39 408 aa10.01□□□□□ -0.81
SCN9A-201ENST00000303354 MYO15BQ96JP2 1530 aa10.01□□□□□ -0.81
SCN9A-201ENST00000303354 NUTM2GQ5VZR2 741 aa10□□□□□ -0.81
SCN9A-201ENST00000303354 WASHC2CQ9Y4E1 1318 aa10□□□□□ -0.81
SCN9A-201ENST00000303354 FBXO3Q9UK99 471 aa10□□□□□ -0.81
SCN9A-201ENST00000303354 TOMM22Q9NS69 142 aa10□□□□□ -0.81
SCN9A-201ENST00000303354 GOLGA6L22H0YM25 854 aa9.99□□□□□ -0.81
SCN9A-201ENST00000303354 RRP7AQ9Y3A4 280 aaKnown RBP9.99□□□□□ -0.81
SCN9A-201ENST00000303354 CUX2O14529 1486 aa9.99□□□□□ -0.81
SCN9A-201ENST00000303354 HSP90B1P14625 803 aaKnown RBP9.99□□□□□ -0.81
SCN9A-201ENST00000303354 KIF27Q86VH2 1401 aa9.98□□□□□ -0.81
SCN9A-201ENST00000303354 ITPRIPQ8IWB1 547 aa9.98□□□□□ -0.81
SCN9A-201ENST00000303354 CLUAP1Q96AJ1 413 aa9.98□□□□□ -0.81
SCN9A-201ENST00000303354 HSPA5P11021 654 aaKnown RBP9.98□□□□□ -0.81
SCN9A-201ENST00000303354 GOLGA3Q08378 1498 aa9.97□□□□□ -0.81
SCN9A-201ENST00000303354 USP35Q9P2H5 1018 aa9.97□□□□□ -0.81
SCN9A-201ENST00000303354 KANK4Q5T7N3 995 aaPredicted RBP9.97□□□□□ -0.81
SCN9A-201ENST00000303354 FOXD4L5Q5VV16 416 aaPredicted RBP9.97□□□□□ -0.81
SCN9A-201ENST00000303354 FOXD4L4Q8WXT5 416 aaPredicted RBP9.97□□□□□ -0.81
SCN9A-201ENST00000303354 NUTM2BA6NNL0 878 aaPredicted RBP9.96□□□□□ -0.82
SCN9A-201ENST00000303354 NUTM2EB1AL46 878 aaPredicted RBP9.96□□□□□ -0.82
SCN9A-201ENST00000303354 NUTM2AQ8IVF1 878 aaPredicted RBP9.96□□□□□ -0.82
SCN9A-201ENST00000303354 FAM177BA6PVY3 158 aa9.96□□□□□ -0.82
SCN9A-201ENST00000303354 TCERG1O14776 1098 aaKnown RBP9.96□□□□□ -0.82
SCN9A-201ENST00000303354 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP9.96□□□□□ -0.82
SCN9A-201ENST00000303354 ARID3AQ99856 593 aa9.96□□□□□ -0.82
SCN9A-201ENST00000303354 GOLGA6L4A6NEF3 574 aa9.95□□□□□ -0.82
SCN9A-201ENST00000303354 CARMIL1Q5VZK9 1371 aa9.95□□□□□ -0.82
SCN9A-201ENST00000303354 TRIM6-TRIM34B2RNG4 842 aa9.95□□□□□ -0.82
SCN9A-201ENST00000303354 PIP4K2BP78356 416 aa9.95□□□□□ -0.82
SCN9A-201ENST00000303354 PNNQ9H307 717 aaKnown RBP9.95□□□□□ -0.82
SCN9A-201ENST00000303354 EIF2S2P20042 333 aaKnown RBP9.94□□□□□ -0.82
SCN9A-201ENST00000303354 DRC7Q8IY82 874 aa9.94□□□□□ -0.82
SCN9A-201ENST00000303354 DDRGK1Q96HY6 314 aa9.94□□□□□ -0.82
SCN9A-201ENST00000303354 KDM4AO75164 1064 aa9.92□□□□□ -0.82
SCN9A-201ENST00000303354 ROCK2O75116 1388 aaKnown RBP9.92□□□□□ -0.82
SCN9A-201ENST00000303354 FAM69CQ0P6D2 419 aa9.92□□□□□ -0.82
SCN9A-201ENST00000303354 SOGA1O94964 1423 aa9.92□□□□□ -0.82
SCN9A-201ENST00000303354 MINK1Q8N4C8 1332 aaPredicted RBP9.92□□□□□ -0.82
SCN9A-201ENST00000303354 BCL2L13Q9BXK5 485 aa9.91□□□□□ -0.82
SCN9A-201ENST00000303354 FOXD4L6Q3SYB3 417 aaPredicted RBP9.91□□□□□ -0.82
SCN9A-201ENST00000303354 FOXD4L3Q6VB84 417 aaPredicted RBP9.91□□□□□ -0.82
SCN9A-201ENST00000303354 NUP155O75694 1391 aa9.91□□□□□ -0.82
SCN9A-201ENST00000303354 EFCAB2Q5VUJ9 269 aa9.91□□□□□ -0.82
SCN9A-201ENST00000303354 GZF1Q9H116 711 aaPredicted RBP9.9□□□□□ -0.82
SCN9A-201ENST00000303354 MTMR7Q9Y216 660 aa9.89□□□□□ -0.83
SCN9A-201ENST00000303354 MPHOSPH9Q99550 1183 aa9.89□□□□□ -0.83
SCN9A-201ENST00000303354 KIAA1211Q6ZU35 1233 aa9.89□□□□□ -0.83
SCN9A-201ENST00000303354 PSME1Q06323 249 aa9.88□□□□□ -0.83
SCN9A-201ENST00000303354 RASSF8Q8NHQ8 419 aa9.88□□□□□ -0.83
SCN9A-201ENST00000303354 MARCH6O60337 910 aa9.88□□□□□ -0.83
SCN9A-201ENST00000303354 NAP1L5Q96NT1 182 aaPredicted RBP9.88□□□□□ -0.83
SCN9A-201ENST00000303354 SPAG9O60271 1321 aaKnown RBP9.88□□□□□ -0.83
SCN9A-201ENST00000303354 SMC4Q9NTJ3 1288 aa9.88□□□□□ -0.83
SCN9A-201ENST00000303354 STK31Q9BXU1 1019 aa9.88□□□□□ -0.83
SCN9A-201ENST00000303354 FYB1O15117 783 aa9.87□□□□□ -0.83
SCN9A-201ENST00000303354 MFAP1P55081 439 aaKnown RBP9.87□□□□□ -0.83
SCN9A-201ENST00000303354 SLC4A3P48751 1232 aa9.87□□□□□ -0.83
SCN9A-201ENST00000303354 HSCBQ8IWL3 235 aa9.87□□□□□ -0.83
SCN9A-201ENST00000303354 DCAF1Q9Y4B6 1507 aa9.86□□□□□ -0.83
SCN9A-201ENST00000303354 MCCP23508 829 aa9.86□□□□□ -0.83
SCN9A-201ENST00000303354 C1orf141Q5JVX7 400 aa9.86□□□□□ -0.83
SCN9A-201ENST00000303354 JPH4Q96JJ6 628 aa9.86□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 7.9 ms