RNA–Protein interactions for RNA: ENST00000300302.9

HERPUD1-201, Transcript of homocysteine inducible ER protein with ubiquitin like domain 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HERPUD1, Length 1,862 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD1-201ENST00000300302 ZNF644Q9H582 1327 aaPredicted RBP23.25■■□□□ 1.31
HERPUD1-201ENST00000300302 DAPK1P53355 1430 aa23.25■■□□□ 1.31
HERPUD1-201ENST00000300302 NPM1P06748 294 aaKnown RBP eCLIP23.24■■□□□ 1.31
HERPUD1-201ENST00000300302 AKNAQ7Z591 1439 aa23.24■■□□□ 1.31
HERPUD1-201ENST00000300302 KCNH8Q96L42 1107 aa23.22■■□□□ 1.31
HERPUD1-201ENST00000300302 ZNF777Q9ULD5 760 aaPredicted RBP23.22■■□□□ 1.31
HERPUD1-201ENST00000300302 PREX2Q70Z35 1606 aa23.22■■□□□ 1.31
HERPUD1-201ENST00000300302 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP23.22■■□□□ 1.316e-6■■■■□ 21.5
HERPUD1-201ENST00000300302 NAIPQ13075 1403 aa23.21■■□□□ 1.31
HERPUD1-201ENST00000300302 ABCC5O15440 1437 aa23.21■■□□□ 1.31
HERPUD1-201ENST00000300302 TTC37Q6PGP7 1564 aa23.2■■□□□ 1.3
HERPUD1-201ENST00000300302 CHIC2Q9UKJ5 165 aa23.19■■□□□ 1.3
HERPUD1-201ENST00000300302 ROCK1Q13464 1354 aa23.19■■□□□ 1.3
HERPUD1-201ENST00000300302 GCC2Q8IWJ2 1684 aa23.18■■□□□ 1.3
HERPUD1-201ENST00000300302 MYO5CQ9NQX4 1742 aa23.17■■□□□ 1.3
HERPUD1-201ENST00000300302 CDC42BPBQ9Y5S2 1711 aa23.17■■□□□ 1.3
HERPUD1-201ENST00000300302 ASXL2Q76L83 1435 aa23.16■■□□□ 1.3
HERPUD1-201ENST00000300302 WDR7Q9Y4E6 1490 aa23.16■■□□□ 1.3
HERPUD1-201ENST00000300302 RRP7BPQ9NSQ0 103 aa23.14■■□□□ 1.29
HERPUD1-201ENST00000300302 CROCC2H7BZ55 1655 aa23.14■■□□□ 1.29
HERPUD1-201ENST00000300302 ARHGAP5Q13017 1502 aa23.13■■□□□ 1.29
HERPUD1-201ENST00000300302 SAMD9LQ8IVG5 1584 aa23.1■■□□□ 1.29
HERPUD1-201ENST00000300302 ADGBQ8N7X0 1667 aa23.1■■□□□ 1.29
HERPUD1-201ENST00000300302 ACIN1Q9UKV3 1341 aaKnown RBP23.1■■□□□ 1.29
HERPUD1-201ENST00000300302 ARHGEF5Q12774 1597 aa23.09■■□□□ 1.29
HERPUD1-201ENST00000300302 PLCH2O75038 1416 aa23.09■■□□□ 1.29
HERPUD1-201ENST00000300302 SHANK2Q9UPX8 1470 aa23.09■■□□□ 1.29
HERPUD1-201ENST00000300302 RSPH4AQ5TD94 716 aa23.08■■□□□ 1.29
HERPUD1-201ENST00000300302 ADGRL2O95490 1459 aa23.07■■□□□ 1.28
HERPUD1-201ENST00000300302 PLEKHH2Q8IVE3 1493 aa23.07■■□□□ 1.28
HERPUD1-201ENST00000300302 ARAP3Q8WWN8 1544 aa23.05■■□□□ 1.28
HERPUD1-201ENST00000300302 MBD5Q9P267 1494 aa23.05■■□□□ 1.28
HERPUD1-201ENST00000300302 ANKRD30AQ9BXX3 1397 aa23.05■■□□□ 1.28
HERPUD1-201ENST00000300302 TSPY4P0CV99 314 aa23.05■■□□□ 1.28
HERPUD1-201ENST00000300302 TSPY10P0CW01 314 aa23.05■■□□□ 1.28
HERPUD1-201ENST00000300302 MAPKBP1O60336 1514 aa23.04■■□□□ 1.28
HERPUD1-201ENST00000300302 NCOA1Q15788 1441 aa23.04■■□□□ 1.28
HERPUD1-201ENST00000300302 CCDC141Q6ZP82 1450 aa23.04■■□□□ 1.28
HERPUD1-201ENST00000300302 HNRNPMP52272 730 aaKnown RBP eCLIP23.03■■□□□ 1.28
HERPUD1-201ENST00000300302 EFCAB2Q5VUJ9 269 aa23.03■■□□□ 1.28
HERPUD1-201ENST00000300302 KIAA1107Q9UPP5 1409 aa23.03■■□□□ 1.28
HERPUD1-201ENST00000300302 ABCA9Q8IUA7 1624 aa23.03■■□□□ 1.28
HERPUD1-201ENST00000300302 C9orf84Q5VXU9 1444 aa23.02■■□□□ 1.28
HERPUD1-201ENST00000300302 SYCP2Q9BX26 1530 aa23.01■■□□□ 1.27
HERPUD1-201ENST00000300302 KDM6BO15054 1643 aa22.99■■□□□ 1.27
HERPUD1-201ENST00000300302 DNAJC5Q9H3Z4 198 aa22.97■■□□□ 1.27
HERPUD1-201ENST00000300302 TRIM52Q96A61 297 aa22.95■■□□□ 1.26
HERPUD1-201ENST00000300302 ABCC1P33527 1531 aa22.94■■□□□ 1.26
HERPUD1-201ENST00000300302 MAST1Q9Y2H9 1570 aa22.93■■□□□ 1.26
HERPUD1-201ENST00000300302 FANCAO15360 1455 aa22.91■■□□□ 1.26
HERPUD1-201ENST00000300302 ANKRD50Q9ULJ7 1429 aa22.91■■□□□ 1.26
HERPUD1-201ENST00000300302 ARHGEF12Q9NZN5 1544 aa22.89■■□□□ 1.26
HERPUD1-201ENST00000300302 KIF15Q9NS87 1388 aa22.89■■□□□ 1.25
HERPUD1-201ENST00000300302 CD109Q6YHK3 1445 aa22.88■■□□□ 1.25
HERPUD1-201ENST00000300302 FAM69CQ0P6D2 419 aa22.86■■□□□ 1.25
HERPUD1-201ENST00000300302 MPHOSPH9Q99550 1183 aa22.85■■□□□ 1.25
HERPUD1-201ENST00000300302 PLXNC1O60486 1568 aa22.84■■□□□ 1.25
HERPUD1-201ENST00000300302 TIMELESSQ9UNS1 1208 aa22.84■■□□□ 1.25
HERPUD1-201ENST00000300302 CFAP74Q9C0B2 1584 aa22.82■■□□□ 1.24
HERPUD1-201ENST00000300302 TRAPPC8Q9Y2L5 1435 aa22.82■■□□□ 1.24
HERPUD1-201ENST00000300302 NEUROD1Q13562 356 aa22.81■■□□□ 1.24
HERPUD1-201ENST00000300302 SIN3AQ96ST3 1273 aa22.81■■□□□ 1.24
HERPUD1-201ENST00000300302 ADGRL1O94910 1474 aa22.81■■□□□ 1.24
HERPUD1-201ENST00000300302 DIP2BQ9P265 1576 aa22.81■■□□□ 1.24
HERPUD1-201ENST00000300302 GLI2P10070 1586 aa22.8■■□□□ 1.24
HERPUD1-201ENST00000300302 DENND4BO75064 1496 aaPredicted RBP22.79■■□□□ 1.24
HERPUD1-201ENST00000300302 SLC4A1APQ9BWU0 796 aaKnown RBP22.78■■□□□ 1.24
HERPUD1-201ENST00000300302 RTEL1-TNFRSF6BF6WH68 1400 aa22.78■■□□□ 1.24
HERPUD1-201ENST00000300302 SCAPERQ9BY12 1400 aa22.77■■□□□ 1.24
HERPUD1-201ENST00000300302 SPAG9O60271 1321 aaKnown RBP22.77■■□□□ 1.24
HERPUD1-201ENST00000300302 DUOX2Q9NRD8 1548 aa22.76■■□□□ 1.23
HERPUD1-201ENST00000300302 MAP3K4Q9Y6R4 1608 aa22.76■■□□□ 1.23
HERPUD1-201ENST00000300302 PZPP20742 1482 aa22.75■■□□□ 1.23
HERPUD1-201ENST00000300302 AFAP1Q8N556 730 aa22.75■■□□□ 1.23
HERPUD1-201ENST00000300302 KDM5DQ9BY66 1539 aa22.74■■□□□ 1.23
HERPUD1-201ENST00000300302 NUP155O75694 1391 aa22.72■■□□□ 1.23
HERPUD1-201ENST00000300302 ZFYVE16Q7Z3T8 1539 aa22.72■■□□□ 1.23
HERPUD1-201ENST00000300302 ERBINQ96RT1 1412 aa22.72■■□□□ 1.23
HERPUD1-201ENST00000300302 TONSLQ96HA7 1378 aa22.71■■□□□ 1.23
HERPUD1-201ENST00000300302 NEO1Q92859 1461 aa22.71■■□□□ 1.23
HERPUD1-201ENST00000300302 INO80Q9ULG1 1556 aaPredicted RBP22.7■■□□□ 1.22
HERPUD1-201ENST00000300302 ZNF518AQ6AHZ1 1483 aa22.69■■□□□ 1.22
HERPUD1-201ENST00000300302 ATP7AQ04656 1500 aa22.69■■□□□ 1.22
HERPUD1-201ENST00000300302 ANKRD30BQ9BXX2 1392 aa22.67■■□□□ 1.22
HERPUD1-201ENST00000300302 ZNF316A6NFI3 1004 aaPredicted RBP22.67■■□□□ 1.22
HERPUD1-201ENST00000300302 UNC13BO14795 1591 aa22.67■■□□□ 1.22
HERPUD1-201ENST00000300302 FOXD1Q16676 465 aa22.66■■□□□ 1.22
HERPUD1-201ENST00000300302 POGZQ7Z3K3 1410 aa22.64■■□□□ 1.21
HERPUD1-201ENST00000300302 PKD2Q13563 968 aa22.64■■□□□ 1.21
HERPUD1-201ENST00000300302 MYT1LQ9UL68 1186 aa22.64■■□□□ 1.21
HERPUD1-201ENST00000300302 KIF13AQ9H1H9 1805 aa22.64■■□□□ 1.21
HERPUD1-201ENST00000300302 FAM135AQ9P2D6 1515 aa22.62■■□□□ 1.21
HERPUD1-201ENST00000300302 TSPOAP1O95153 1857 aa22.61■■□□□ 1.21
HERPUD1-201ENST00000300302 PPP1R15AO75807 674 aaPredicted RBP22.61■■□□□ 1.21
HERPUD1-201ENST00000300302 KDM5CP41229 1560 aa22.61■■□□□ 1.21
HERPUD1-201ENST00000300302 PPRC1Q5VV67 1664 aaKnown RBP22.6■■□□□ 1.21
HERPUD1-201ENST00000300302 RAPGEF3O95398 923 aa22.6■■□□□ 1.21
HERPUD1-201ENST00000300302 RPRD2Q5VT52 1461 aaKnown RBP22.59■■□□□ 1.21
HERPUD1-201ENST00000300302 MAGI2Q86UL8 1455 aa22.59■■□□□ 1.21
HERPUD1-201ENST00000300302 IQGAP3Q86VI3 1631 aa22.58■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms