RNA–Protein interactions for RNA: ENST00000296215.7

SNIP1-201, Transcript of Smad nuclear interacting protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNIP1, Length 4,605 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNIP1-201ENST00000296215 FRAT2O75474 233 aaPredicted RBP14.94□□□□□ -0.02
SNIP1-201ENST00000296215 SPRYD3Q8NCJ5 442 aa14.94□□□□□ -0.02
SNIP1-201ENST00000296215 MRE11P49959 708 aa14.93□□□□□ -0.02
SNIP1-201ENST00000296215 FAM193AP78312 1265 aa14.91□□□□□ -0.02
SNIP1-201ENST00000296215 ABCC9O60706 1549 aa14.91□□□□□ -0.02
SNIP1-201ENST00000296215 PLCB2Q00722 1185 aa14.9□□□□□ -0.02
SNIP1-201ENST00000296215 ZFP91Q96JP5 570 aaPredicted RBP14.9□□□□□ -0.02
SNIP1-201ENST00000296215 CLCN1P35523 988 aa14.9□□□□□ -0.02
SNIP1-201ENST00000296215 SMAP1Q8IYB5 467 aaPredicted RBP14.9□□□□□ -0.02
SNIP1-201ENST00000296215 TMC1Q8TDI8 760 aa14.89□□□□□ -0.03
SNIP1-201ENST00000296215 BCCIPQ9P287 314 aaKnown RBP eCLIP14.89□□□□□ -0.03
SNIP1-201ENST00000296215 WASHC2CQ9Y4E1 1318 aa14.89□□□□□ -0.03
SNIP1-201ENST00000296215 DNAJC2Q99543 621 aaKnown RBP14.88□□□□□ -0.03
SNIP1-201ENST00000296215 WASHC2AQ641Q2 1341 aa14.88□□□□□ -0.03
SNIP1-201ENST00000296215 ZNF526Q8TF50 670 aaPredicted RBP14.87□□□□□ -0.03
SNIP1-201ENST00000296215 GBP4Q96PP9 640 aa14.87□□□□□ -0.03
SNIP1-201ENST00000296215 UQCRHLA0A096LP55 91 aa14.86□□□□□ -0.03
SNIP1-201ENST00000296215 UQCRHP07919 91 aa14.86□□□□□ -0.03
SNIP1-201ENST00000296215 TSPYL1Q9H0U9 437 aa14.86□□□□□ -0.03
SNIP1-201ENST00000296215 PPP4R3BQ5MIZ7 849 aa14.86□□□□□ -0.03
SNIP1-201ENST00000296215 KCNJ4P48050 445 aa14.85□□□□□ -0.03
SNIP1-201ENST00000296215 LETM1O95202 739 aaPredicted RBP14.84□□□□□ -0.03
SNIP1-201ENST00000296215 SENP3-EIF4A1A0A087X0R7 540 aa14.83□□□□□ -0.03
SNIP1-201ENST00000296215 CBX1P83916 185 aa14.83□□□□□ -0.03
SNIP1-201ENST00000296215 PLPPR3Q6T4P5 718 aa14.83□□□□□ -0.04
SNIP1-201ENST00000296215 SIN3AQ96ST3 1273 aa14.82□□□□□ -0.04
SNIP1-201ENST00000296215 MS4A1P11836 297 aa14.82□□□□□ -0.04
SNIP1-201ENST00000296215 AXDND1Q5T1B0 1012 aaPredicted RBP14.82□□□□□ -0.04
SNIP1-201ENST00000296215 HDAC5Q9UQL6 1122 aa14.82□□□□□ -0.04
SNIP1-201ENST00000296215 EEA1Q15075 1411 aa14.82□□□□□ -0.04
SNIP1-201ENST00000296215 CNPY4Q8N129 248 aa14.81□□□□□ -0.04
SNIP1-201ENST00000296215 HSCBQ8IWL3 235 aa14.81□□□□□ -0.04
SNIP1-201ENST00000296215 TONSLQ96HA7 1378 aa14.81□□□□□ -0.04
SNIP1-201ENST00000296215 DDX11L8A8MPP1 907 aa14.81□□□□□ -0.04
SNIP1-201ENST00000296215 FAM50AQ14320 339 aaKnown RBP14.81□□□□□ -0.04
SNIP1-201ENST00000296215 HMGB1P09429 215 aaKnown RBP14.81□□□□□ -0.04
SNIP1-201ENST00000296215 HSP90AB1P08238 724 aaKnown RBP14.8□□□□□ -0.04
SNIP1-201ENST00000296215 NOM1Q5C9Z4 860 aaKnown RBP14.79□□□□□ -0.04
SNIP1-201ENST00000296215 KIF20AO95235 890 aa14.78□□□□□ -0.04
SNIP1-201ENST00000296215 SETQ01105 290 aaPredicted RBP14.78□□□□□ -0.04
SNIP1-201ENST00000296215 GTPBP4Q9BZE4 634 aaKnown RBP14.78□□□□□ -0.04
SNIP1-201ENST00000296215 OS9Q13438 667 aaPredicted RBP14.78□□□□□ -0.04
SNIP1-201ENST00000296215 RRAGDQ9NQL2 400 aaPredicted RBP14.78□□□□□ -0.04
SNIP1-201ENST00000296215 GPATCH11Q8N954 259 aa14.77□□□□□ -0.05
SNIP1-201ENST00000296215 PLCD4Q9BRC7 762 aa14.76□□□□□ -0.05
SNIP1-201ENST00000296215 BAZ1BQ9UIG0 1483 aaKnown RBP14.75□□□□□ -0.05
SNIP1-201ENST00000296215 KIF3AQ9Y496 699 aa14.75□□□□□ -0.05
SNIP1-201ENST00000296215 RSPH4AQ5TD94 716 aa14.74□□□□□ -0.05
SNIP1-201ENST00000296215 TEX35Q5T0J7 233 aa14.74□□□□□ -0.05
SNIP1-201ENST00000296215 HMGN5P82970 282 aaKnown RBP14.73□□□□□ -0.05
SNIP1-201ENST00000296215 DEF6Q9H4E7 631 aa14.73□□□□□ -0.05
SNIP1-201ENST00000296215 CALCOCO1Q9P1Z2 691 aa14.73□□□□□ -0.05
SNIP1-201ENST00000296215 POGKQ9P215 609 aa14.73□□□□□ -0.05
SNIP1-201ENST00000296215 LMOD3Q0VAK6 560 aa14.73□□□□□ -0.05
SNIP1-201ENST00000296215 TEX2Q8IWB9 1127 aa14.72□□□□□ -0.05
SNIP1-201ENST00000296215 TIGD1Q96MW7 591 aa14.72□□□□□ -0.05
SNIP1-201ENST00000296215 TNNT1P13805 278 aa14.72□□□□□ -0.05
SNIP1-201ENST00000296215 SKOR2Q2VWA4 1001 aaPredicted RBP14.72□□□□□ -0.05
SNIP1-201ENST00000296215 P3H3Q8IVL6 736 aa14.71□□□□□ -0.05
SNIP1-201ENST00000296215 GTF2A1P52655 376 aaPredicted RBP14.71□□□□□ -0.06
SNIP1-201ENST00000296215 GPS2Q13227 327 aa14.71□□□□□ -0.06
SNIP1-201ENST00000296215 SECISBP2LQ93073 1101 aaKnown RBP14.71□□□□□ -0.06
SNIP1-201ENST00000296215 STAC3Q96MF2 364 aa14.71□□□□□ -0.06
SNIP1-201ENST00000296215 ZSCAN30Q86W11 494 aa14.7□□□□□ -0.06
SNIP1-201ENST00000296215 TRERF1Q96PN7 1200 aa14.7□□□□□ -0.06
SNIP1-201ENST00000296215 GRPEL1Q9HAV7 217 aa14.7□□□□□ -0.06
SNIP1-201ENST00000296215 NASPP49321 788 aaPredicted RBP14.7□□□□□ -0.06
SNIP1-201ENST00000296215 CCDC173Q0VFZ6 552 aa14.7□□□□□ -0.06
SNIP1-201ENST00000296215 FAM161AQ3B820 660 aa14.7□□□□□ -0.06
SNIP1-201ENST00000296215 ZNF622Q969S3 477 aaKnown RBP eCLIP14.69□□□□□ -0.062e-9■□□□□ 10.5
SNIP1-201ENST00000296215 ERICH4A6NGS2 130 aa14.69□□□□□ -0.06
SNIP1-201ENST00000296215 CWC15Q9P013 229 aaKnown RBP14.69□□□□□ -0.06
SNIP1-201ENST00000296215 HTATSF1O43719 755 aaKnown RBP14.69□□□□□ -0.06
SNIP1-201ENST00000296215 SSR1P43307 286 aaKnown RBP14.69□□□□□ -0.06
SNIP1-201ENST00000296215 ISY1Q9ULR0 285 aaKnown RBP14.68□□□□□ -0.06
SNIP1-201ENST00000296215 TRAK2O60296 914 aa14.67□□□□□ -0.06
SNIP1-201ENST00000296215 NUDCQ9Y266 331 aa14.67□□□□□ -0.06
SNIP1-201ENST00000296215 DYNC1I1O14576 645 aa14.67□□□□□ -0.06
SNIP1-201ENST00000296215 TRIM6-TRIM34B2RNG4 842 aa14.66□□□□□ -0.06
SNIP1-201ENST00000296215 TRIM34Q9BYJ4 488 aa14.66□□□□□ -0.06
SNIP1-201ENST00000296215 CERS3Q8IU89 383 aa14.66□□□□□ -0.06
SNIP1-201ENST00000296215 DIAPH3Q9NSV4 1193 aa14.66□□□□□ -0.06
SNIP1-201ENST00000296215 RBM25P49756 843 aaKnown RBP14.65□□□□□ -0.06
SNIP1-201ENST00000296215 TPRNQ4KMQ1 711 aa14.65□□□□□ -0.06
SNIP1-201ENST00000296215 BANK1Q8NDB2 785 aa14.65□□□□□ -0.06
SNIP1-201ENST00000296215 PDCL2Q8N4E4 241 aa14.65□□□□□ -0.06
SNIP1-201ENST00000296215 DDX49Q9Y6V7 483 aaKnown RBP14.65□□□□□ -0.06
SNIP1-201ENST00000296215 CCDC94Q9BW85 323 aaPredicted RBP14.64□□□□□ -0.07
SNIP1-201ENST00000296215 DRC7Q8IY82 874 aa14.64□□□□□ -0.07
SNIP1-201ENST00000296215 GTF2E1P29083 439 aaPredicted RBP14.64□□□□□ -0.07
SNIP1-201ENST00000296215 BACH2Q9BYV9 841 aa14.64□□□□□ -0.07
SNIP1-201ENST00000296215 CENPJQ9HC77 1338 aaPredicted RBP14.61□□□□□ -0.07
SNIP1-201ENST00000296215 SASS6Q6UVJ0 657 aa14.61□□□□□ -0.07
SNIP1-201ENST00000296215 CHMP5Q9NZZ3 219 aa14.61□□□□□ -0.07
SNIP1-201ENST00000296215 TDO2P48775 406 aa14.61□□□□□ -0.07
SNIP1-201ENST00000296215 RCAN3Q9UKA8 241 aa14.61□□□□□ -0.07
SNIP1-201ENST00000296215 NBPF1Q3BBV0 1214 aa14.6□□□□□ -0.07
SNIP1-201ENST00000296215 CCDC39Q9UFE4 941 aa14.6□□□□□ -0.07
SNIP1-201ENST00000296215 EIF4G2P78344 907 aaKnown RBP eCLIP14.6□□□□□ -0.077e-6■□□□□ 9.1
SNIP1-201ENST00000296215 WDR43Q15061 677 aaKnown RBP eCLIP14.6□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms