RNA–Protein interactions for RNA: ENST00000284049.7

CHD1-201, Transcript of chromodomain helicase DNA binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CHD1, Length 6,457 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD1-201ENST00000284049 SERPINA10Q9UK55 444 aa4.15□□□□□ -1.75
CHD1-201ENST00000284049 TESPA1A2RU30 521 aaPredicted RBP4.14□□□□□ -1.75
CHD1-201ENST00000284049 SSUH2Q9Y2M2 353 aa4.14□□□□□ -1.75
CHD1-201ENST00000284049 PRR29P0C7W0 189 aa4.14□□□□□ -1.75
CHD1-201ENST00000284049 PRM3Q9NNZ6 103 aa4.13□□□□□ -1.75
CHD1-201ENST00000284049 NLRP6P59044 892 aa4.13□□□□□ -1.75
CHD1-201ENST00000284049 RB1CC1Q8TDY2 1594 aa4.13□□□□□ -1.75
CHD1-201ENST00000284049 SPDYE1Q8NFV5 336 aaPredicted RBP4.13□□□□□ -1.75
CHD1-201ENST00000284049 CLUAP1Q96AJ1 413 aa4.12□□□□□ -1.75
CHD1-201ENST00000284049 TSPYL2Q9H2G4 693 aaPredicted RBP4.12□□□□□ -1.75
CHD1-201ENST00000284049 TRIM66O15016 1216 aa4.12□□□□□ -1.75
CHD1-201ENST00000284049 PEG3Q9GZU2 1588 aa4.12□□□□□ -1.75
CHD1-201ENST00000284049 ZMYND10O75800 440 aa4.11□□□□□ -1.75
CHD1-201ENST00000284049 FAM117AQ9C073 453 aa4.11□□□□□ -1.75
CHD1-201ENST00000284049 CCDC27Q2M243 656 aa4.11□□□□□ -1.75
CHD1-201ENST00000284049 FOXD4L5Q5VV16 416 aaPredicted RBP4.11□□□□□ -1.75
CHD1-201ENST00000284049 FOXD4L4Q8WXT5 416 aaPredicted RBP4.11□□□□□ -1.75
CHD1-201ENST00000284049 NECTIN2Q92692 538 aa4.11□□□□□ -1.75
CHD1-201ENST00000284049 PPP1R1BQ9UD71 204 aaPredicted RBP4.11□□□□□ -1.75
CHD1-201ENST00000284049 MTMR7Q9Y216 660 aa4.11□□□□□ -1.75
CHD1-201ENST00000284049 RBM26Q5T8P6 1007 aaKnown RBP4.11□□□□□ -1.75
CHD1-201ENST00000284049 BCL11AQ9H165 835 aa4.1□□□□□ -1.75
CHD1-201ENST00000284049 PATL2C9JE40 543 aaKnown RBP4.1□□□□□ -1.75
CHD1-201ENST00000284049 PPM1GO15355 546 aaPredicted RBP4.1□□□□□ -1.75
CHD1-201ENST00000284049 C1orf115Q9H7X2 142 aa4.1□□□□□ -1.75
CHD1-201ENST00000284049 DDX27Q96GQ7 796 aaKnown RBP4.1□□□□□ -1.75
CHD1-201ENST00000284049 CALR3Q96L12 384 aaKnown RBP4.09□□□□□ -1.75
CHD1-201ENST00000284049 SGIP1Q9BQI5 828 aa4.09□□□□□ -1.75
CHD1-201ENST00000284049 TRAK2O60296 914 aa4.09□□□□□ -1.75
CHD1-201ENST00000284049 NUBP1P53384 320 aa4.09□□□□□ -1.75
CHD1-201ENST00000284049 CADPS2Q86UW7 1296 aa4.09□□□□□ -1.75
CHD1-201ENST00000284049 ZNF330Q9Y3S2 320 aaPredicted RBP4.09□□□□□ -1.75
CHD1-201ENST00000284049 CSB-PGBD3P0DP91 1061 aa4.09□□□□□ -1.76
CHD1-201ENST00000284049 PPP1R15AO75807 674 aaPredicted RBP4.08□□□□□ -1.76
CHD1-201ENST00000284049 RFX1P22670 979 aa4.08□□□□□ -1.76
CHD1-201ENST00000284049 RETREG2Q8NC44 543 aa4.08□□□□□ -1.76
CHD1-201ENST00000284049 BICRAQ9NZM4 1560 aa4.08□□□□□ -1.76
CHD1-201ENST00000284049 PAK3O75914 559 aaPredicted RBP4.08□□□□□ -1.76
CHD1-201ENST00000284049 GRXCR2A6NFK2 248 aa4.07□□□□□ -1.76
CHD1-201ENST00000284049 A6NJR5 290 aa4.07□□□□□ -1.76
CHD1-201ENST00000284049 CABP2Q9NPB3 220 aa4.07□□□□□ -1.76
CHD1-201ENST00000284049 RASEFQ8IZ41 740 aa4.07□□□□□ -1.76
CHD1-201ENST00000284049 ARID4BQ4LE39 1312 aaPredicted RBP4.07□□□□□ -1.76
CHD1-201ENST00000284049 CCER1Q8TC90 406 aaPredicted RBP4.07□□□□□ -1.76
CHD1-201ENST00000284049 LOC105371045A0A1W2PR82 267 aa4.06□□□□□ -1.76
CHD1-201ENST00000284049 C1QBPQ07021 282 aaKnown RBP4.06□□□□□ -1.76
CHD1-201ENST00000284049 PSEN1P49768 467 aa4.06□□□□□ -1.76
CHD1-201ENST00000284049 CHRM1P11229 460 aaPredicted RBP4.06□□□□□ -1.76
CHD1-201ENST00000284049 TRAIPQ9BWF2 469 aa4.06□□□□□ -1.76
CHD1-201ENST00000284049 MINK1Q8N4C8 1332 aaPredicted RBP4.06□□□□□ -1.76
CHD1-201ENST00000284049 G3V3G9 751 aa4.06□□□□□ -1.76
CHD1-201ENST00000284049 PCDHB8Q9UN66 801 aa4.06□□□□□ -1.76
CHD1-201ENST00000284049 PCDHB13Q9Y5F0 798 aa4.06□□□□□ -1.76
CHD1-201ENST00000284049 FAM9AQ8IZU1 332 aaPredicted RBP4.05□□□□□ -1.76
CHD1-201ENST00000284049 PROSER2Q86WR7 435 aaPredicted RBP4.05□□□□□ -1.76
CHD1-201ENST00000284049 POLR3EQ9NVU0 708 aa4.04□□□□□ -1.76
CHD1-201ENST00000284049 SPDYE16A6NNV3 312 aaPredicted RBP4.04□□□□□ -1.76
CHD1-201ENST00000284049 UNC13AQ9UPW8 1703 aa4.04□□□□□ -1.76
CHD1-201ENST00000284049 RBM42Q9BTD8 480 aaKnown RBP4.04□□□□□ -1.76
CHD1-201ENST00000284049 RSPH4AQ5TD94 716 aa4.04□□□□□ -1.76
CHD1-201ENST00000284049 SOX12O15370 315 aa4.03□□□□□ -1.76
CHD1-201ENST00000284049 EFCAB3Q8N7B9 438 aa4.03□□□□□ -1.76
CHD1-201ENST00000284049 MLLT3P42568 568 aaPredicted RBP4.03□□□□□ -1.76
CHD1-201ENST00000284049 GNPATO15228 680 aa4.03□□□□□ -1.76
CHD1-201ENST00000284049 B4GALNT3Q6L9W6 998 aa4.03□□□□□ -1.76
CHD1-201ENST00000284049 PHF8Q9UPP1 1060 aa4.03□□□□□ -1.76
CHD1-201ENST00000284049 DPYSL4O14531 572 aa4.02□□□□□ -1.77
CHD1-201ENST00000284049 HIC1Q14526 733 aa4.02□□□□□ -1.77
CHD1-201ENST00000284049 PARP9Q8IXQ6 854 aa4.02□□□□□ -1.77
CHD1-201ENST00000284049 CCDC102AQ96A19 550 aa4.02□□□□□ -1.77
CHD1-201ENST00000284049 ABL2P42684 1182 aa4.02□□□□□ -1.77
CHD1-201ENST00000284049 MAP3K9P80192 1104 aa4.02□□□□□ -1.77
CHD1-201ENST00000284049 TBC1D12O60347 775 aa4.01□□□□□ -1.77
CHD1-201ENST00000284049 IGSF3O75054 1194 aa4.01□□□□□ -1.77
CHD1-201ENST00000284049 CLCN1P35523 988 aa4.01□□□□□ -1.77
CHD1-201ENST00000284049 MFRPQ9BY79 579 aa4.01□□□□□ -1.77
CHD1-201ENST00000284049 MAP2K5Q13163 448 aa4.01□□□□□ -1.77
CHD1-201ENST00000284049 IRF6O14896 467 aa4.01□□□□□ -1.77
CHD1-201ENST00000284049 MCM6Q14566 821 aa4□□□□□ -1.77
CHD1-201ENST00000284049 FCHSD2O94868 740 aa4□□□□□ -1.77
CHD1-201ENST00000284049 ZNF428Q96B54 188 aa4□□□□□ -1.77
CHD1-201ENST00000284049 DIXDC1Q155Q3 683 aa4□□□□□ -1.77
CHD1-201ENST00000284049 PPP1R15BQ5SWA1 713 aa4□□□□□ -1.77
CHD1-201ENST00000284049 GIGYF2Q6Y7W6 1299 aaKnown RBP3.99□□□□□ -1.77
CHD1-201ENST00000284049 PUS7Q96PZ0 661 aaKnown RBP3.99□□□□□ -1.77
CHD1-201ENST00000284049 NCLP19338 710 aaKnown RBP3.99□□□□□ -1.77
CHD1-201ENST00000284049 CSPP1Q1MSJ5 1256 aa3.99□□□□□ -1.77
CHD1-201ENST00000284049 MDM2Q00987 491 aaPredicted RBP3.99□□□□□ -1.77
CHD1-201ENST00000284049 TMC2Q8TDI7 906 aa3.99□□□□□ -1.77
CHD1-201ENST00000284049 PPP1R37O75864 691 aa3.99□□□□□ -1.77
CHD1-201ENST00000284049 BEGAINQ9BUH8 593 aa3.99□□□□□ -1.77
CHD1-201ENST00000284049 GOPCQ9HD26 462 aa3.99□□□□□ -1.77
CHD1-201ENST00000284049 UPF1Q92900 1129 aaKnown RBP eCLIP3.98□□□□□ -1.77
CHD1-201ENST00000284049 IVNS1ABPQ9Y6Y0 642 aa3.98□□□□□ -1.77
CHD1-201ENST00000284049 ABCC9O60706 1549 aa3.97□□□□□ -1.77
CHD1-201ENST00000284049 BRD1O95696 1058 aa3.97□□□□□ -1.77
CHD1-201ENST00000284049 GDPD2Q9HCC8 539 aa3.97□□□□□ -1.77
CHD1-201ENST00000284049 HMGXB3Q12766 1538 aa3.97□□□□□ -1.77
CHD1-201ENST00000284049 PBXIP1Q96AQ6 731 aa3.96□□□□□ -1.78
CHD1-201ENST00000284049 SMARCA2P51531 1590 aa3.96□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms