RNA–Protein interactions for RNA: ENST00000278833.3

ROM1-201, Transcript of retinal outer segment membrane protein 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene ROM1, Length 1,878 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ROM1-201ENST00000278833 DNMT1P26358 1616 aaKnown RBP35.75■■■■□ 3.31
ROM1-201ENST00000278833 ROCK1Q13464 1354 aa35.73■■■■□ 3.31
ROM1-201ENST00000278833 PLB1Q6P1J6 1458 aa35.72■■■■□ 3.31
ROM1-201ENST00000278833 ADCY10Q96PN6 1610 aa35.72■■■■□ 3.31
ROM1-201ENST00000278833 DENND4BO75064 1496 aaPredicted RBP35.7■■■■□ 3.31
ROM1-201ENST00000278833 KDM6BO15054 1643 aa35.66■■■■□ 3.3
ROM1-201ENST00000278833 ABCA8O94911 1581 aa35.64■■■■□ 3.3
ROM1-201ENST00000278833 UHRF1BP1LA0JNW5 1464 aa35.64■■■■□ 3.3
ROM1-201ENST00000278833 ABCC2Q92887 1545 aa35.64■■■■□ 3.3
ROM1-201ENST00000278833 DAPK1P53355 1430 aa35.63■■■■□ 3.29
ROM1-201ENST00000278833 ITSN2Q9NZM3 1697 aa35.63■■■■□ 3.29
ROM1-201ENST00000278833 NPM1P06748 294 aaKnown RBP eCLIP35.56■■■■□ 3.28
ROM1-201ENST00000278833 TROQ12816 1431 aaPredicted RBP35.56■■■■□ 3.28
ROM1-201ENST00000278833 ABCC5O15440 1437 aa35.54■■■■□ 3.28
ROM1-201ENST00000278833 CCER2I3L3R5 266 aa35.53■■■■□ 3.28
ROM1-201ENST00000278833 DDX10Q13206 875 aaKnown RBP35.52■■■■□ 3.28
ROM1-201ENST00000278833 CDK11AQ9UQ88 783 aaPredicted RBP35.52■■■■□ 3.28
ROM1-201ENST00000278833 ADGBQ8N7X0 1667 aa35.51■■■■□ 3.28
ROM1-201ENST00000278833 RRP7BPQ9NSQ0 103 aa35.51■■■■□ 3.28
ROM1-201ENST00000278833 CROCC2H7BZ55 1655 aa35.47■■■■□ 3.27
ROM1-201ENST00000278833 ARID3CA6NKF2 412 aa35.47■■■■□ 3.27
ROM1-201ENST00000278833 ADGRL2O95490 1459 aa35.42■■■■□ 3.26
ROM1-201ENST00000278833 ZCCHC11Q5TAX3 1644 aaKnown RBP35.42■■■■□ 3.26
ROM1-201ENST00000278833 CHIC2Q9UKJ5 165 aa35.41■■■■□ 3.26
ROM1-201ENST00000278833 CAMSAP2Q08AD1 1489 aa35.4■■■■□ 3.26
ROM1-201ENST00000278833 ATP10BO94823 1461 aa35.4■■■■□ 3.26
ROM1-201ENST00000278833 MPHOSPH9Q99550 1183 aa35.39■■■■□ 3.26
ROM1-201ENST00000278833 RPRD2Q5VT52 1461 aaKnown RBP35.38■■■■□ 3.25
ROM1-201ENST00000278833 GPATCH8Q9UKJ3 1502 aaKnown RBP35.36■■■■□ 3.25
ROM1-201ENST00000278833 KIF14Q15058 1648 aa35.35■■■■□ 3.25
ROM1-201ENST00000278833 ANKRD30BQ9BXX2 1392 aa35.34■■■■□ 3.25
ROM1-201ENST00000278833 ANP32CO43423 234 aa35.33■■■■□ 3.25
ROM1-201ENST00000278833 KCNH8Q96L42 1107 aa35.32■■■■□ 3.24
ROM1-201ENST00000278833 ASXL2Q76L83 1435 aa35.32■■■■□ 3.24
ROM1-201ENST00000278833 TEX14Q8IWB6 1497 aa35.31■■■■□ 3.24
ROM1-201ENST00000278833 TRIM52Q96A61 297 aa35.31■■■■□ 3.24
ROM1-201ENST00000278833 SUPT16HQ9Y5B9 1047 aaKnown RBP35.31■■■■□ 3.24
ROM1-201ENST00000278833 SHANK2Q9UPX8 1470 aa35.26■■■■□ 3.23
ROM1-201ENST00000278833 TRHP20396 242 aaPredicted RBP35.25■■■■□ 3.23
ROM1-201ENST00000278833 NCOA1Q15788 1441 aa35.25■■■■□ 3.23
ROM1-201ENST00000278833 CDC42BPAQ5VT25 1732 aa35.24■■■■□ 3.23
ROM1-201ENST00000278833 PZPP20742 1482 aa35.23■■■■□ 3.23
ROM1-201ENST00000278833 HIRIP3Q9BW71 556 aaPredicted RBP35.22■■■■□ 3.23
ROM1-201ENST00000278833 POLR1AO95602 1720 aaPredicted RBP35.22■■■■□ 3.23
ROM1-201ENST00000278833 ABCC10Q5T3U5 1492 aa35.22■■■■□ 3.23
ROM1-201ENST00000278833 ZNF644Q9H582 1327 aaPredicted RBP35.2■■■■□ 3.23
ROM1-201ENST00000278833 WDR7Q9Y4E6 1490 aa35.19■■■■□ 3.22
ROM1-201ENST00000278833 CFDP1Q9UEE9 299 aaPredicted RBP35.15■■■■□ 3.22
ROM1-201ENST00000278833 PLEKHD1A6NEE1 506 aa35.14■■■■□ 3.22
ROM1-201ENST00000278833 FAM69CQ0P6D2 419 aa35.14■■■■□ 3.22
ROM1-201ENST00000278833 HSPA5P11021 654 aaKnown RBP35.13■■■■□ 3.21
ROM1-201ENST00000278833 EIF4G2P78344 907 aaKnown RBP eCLIP35.13■■■■□ 3.21
ROM1-201ENST00000278833 L3MBTL2Q969R5 705 aa35.13■■■■□ 3.21
ROM1-201ENST00000278833 DIP2BQ9P265 1576 aa35.12■■■■□ 3.21
ROM1-201ENST00000278833 MBD5Q9P267 1494 aa35.11■■■■□ 3.21
ROM1-201ENST00000278833 KDM5DQ9BY66 1539 aa35.1■■■■□ 3.21
ROM1-201ENST00000278833 KIF13AQ9H1H9 1805 aa35.09■■■■□ 3.21
ROM1-201ENST00000278833 ARHGEF5Q12774 1597 aa35.09■■■■□ 3.21
ROM1-201ENST00000278833 ANKRD30AQ9BXX3 1397 aa35.09■■■■□ 3.21
ROM1-201ENST00000278833 WASHC2AQ641Q2 1341 aa35.09■■■■□ 3.21
ROM1-201ENST00000278833 CNTLNQ9NXG0 1405 aa35.08■■■■□ 3.21
ROM1-201ENST00000278833 KIAA1107Q9UPP5 1409 aa35.07■■■■□ 3.2
ROM1-201ENST00000278833 SPATA31E1Q6ZUB1 1445 aa35.04■■■■□ 3.2
ROM1-201ENST00000278833 SLC4A1APQ9BWU0 796 aaKnown RBP35.03■■■■□ 3.2
ROM1-201ENST00000278833 GLI2P10070 1586 aa34.99■■■■□ 3.19
ROM1-201ENST00000278833 CCDC7Q96M83 1385 aa34.98■■■■□ 3.19
ROM1-201ENST00000278833 ANKRD50Q9ULJ7 1429 aa34.97■■■■□ 3.19
ROM1-201ENST00000278833 FOXD1Q16676 465 aa34.97■■■■□ 3.19
ROM1-201ENST00000278833 PREX2Q70Z35 1606 aa34.96■■■■□ 3.19
ROM1-201ENST00000278833 C9orf84Q5VXU9 1444 aa34.95■■■■□ 3.19
ROM1-201ENST00000278833 NBPF8Q3BBV2 869 aa34.92■■■■□ 3.18
ROM1-201ENST00000278833 ARHGEF12Q9NZN5 1544 aa34.9■■■■□ 3.18
ROM1-201ENST00000278833 MAP3K4Q9Y6R4 1608 aa34.87■■■■□ 3.17
ROM1-201ENST00000278833 UHRF1BP1Q6BDS2 1440 aa34.86■■■■□ 3.17
ROM1-201ENST00000278833 CDC42BPBQ9Y5S2 1711 aa34.86■■■■□ 3.17
ROM1-201ENST00000278833 ABCA9Q8IUA7 1624 aa34.86■■■■□ 3.17
ROM1-201ENST00000278833 TSPOAP1O95153 1857 aa34.85■■■■□ 3.17
ROM1-201ENST00000278833 MAST1Q9Y2H9 1570 aa34.85■■■■□ 3.17
ROM1-201ENST00000278833 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP34.84■■■■□ 3.17
ROM1-201ENST00000278833 CD109Q6YHK3 1445 aa34.84■■■■□ 3.17
ROM1-201ENST00000278833 SAMD9LQ8IVG5 1584 aa34.84■■■■□ 3.17
ROM1-201ENST00000278833 CCDC141Q6ZP82 1450 aa34.81■■■■□ 3.16
ROM1-201ENST00000278833 KDM5CP41229 1560 aa34.79■■■■□ 3.16
ROM1-201ENST00000278833 TTC37Q6PGP7 1564 aa34.79■■■■□ 3.16
ROM1-201ENST00000278833 ZNF777Q9ULD5 760 aaPredicted RBP34.79■■■■□ 3.16
ROM1-201ENST00000278833 RALGAPBQ86X10 1494 aa34.77■■■■□ 3.16
ROM1-201ENST00000278833 PPRC1Q5VV67 1664 aaKnown RBP34.76■■■■□ 3.15
ROM1-201ENST00000278833 C11orf95C9JLR9 678 aaPredicted RBP34.74■■■■□ 3.15
ROM1-201ENST00000278833 PKD2Q13563 968 aa34.73■■■■□ 3.15
ROM1-201ENST00000278833 RSPH4AQ5TD94 716 aa34.73■■■■□ 3.15
ROM1-201ENST00000278833 ARID4BQ4LE39 1312 aaPredicted RBP34.73■■■■□ 3.15
ROM1-201ENST00000278833 KIF7Q2M1P5 1343 aa34.72■■■■□ 3.15
ROM1-201ENST00000278833 KIF15Q9NS87 1388 aa34.72■■■■□ 3.15
ROM1-201ENST00000278833 NEFLP07196 543 aa34.71■■■■□ 3.15
ROM1-201ENST00000278833 UNC13BO14795 1591 aa34.7■■■■□ 3.15
ROM1-201ENST00000278833 PRKRIP1Q9H875 184 aaPredicted RBP34.69■■■■□ 3.14
ROM1-201ENST00000278833 PLXNC1O60486 1568 aa34.68■■■■□ 3.14
ROM1-201ENST00000278833 NUP155O75694 1391 aa34.68■■■■□ 3.14
ROM1-201ENST00000278833 TSPY4P0CV99 314 aa34.68■■■■□ 3.14
ROM1-201ENST00000278833 TSPY10P0CW01 314 aa34.68■■■■□ 3.14
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms