RNA–Protein interactions for RNA: ENST00000268049.11

USP3-201, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5 BASIC

Gene USP3, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-201ENST00000268049 TMC1Q8TDI8 760 aa10.35□□□□□ -0.75
USP3-201ENST00000268049 SPAG9O60271 1321 aaKnown RBP10.35□□□□□ -0.75
USP3-201ENST00000268049 SYNJ2O15056 1496 aa10.34□□□□□ -0.75
USP3-201ENST00000268049 HNRNPMP52272 730 aaKnown RBP eCLIP10.34□□□□□ -0.753e-6■■□□□ 12.1
USP3-201ENST00000268049 WASHC2AQ641Q2 1341 aa10.33□□□□□ -0.76
USP3-201ENST00000268049 MAGI1Q96QZ7 1491 aaPredicted RBP10.33□□□□□ -0.76
USP3-201ENST00000268049 RGL3Q3MIN7 710 aa10.33□□□□□ -0.76
USP3-201ENST00000268049 G3V3G9 751 aa10.32□□□□□ -0.76
USP3-201ENST00000268049 DCAF8Q5TAQ9 597 aa10.32□□□□□ -0.76
USP3-201ENST00000268049 KANK4Q5T7N3 995 aaPredicted RBP10.32□□□□□ -0.76
USP3-201ENST00000268049 ZNF608Q9ULD9 1512 aaPredicted RBP10.32□□□□□ -0.76
USP3-201ENST00000268049 CDK11BP21127 795 aaKnown RBP10.32□□□□□ -0.76
USP3-201ENST00000268049 POGZQ7Z3K3 1410 aa10.32□□□□□ -0.76
USP3-201ENST00000268049 KIF3BO15066 747 aa10.3□□□□□ -0.76
USP3-201ENST00000268049 MSH5O43196 834 aa10.3□□□□□ -0.76
USP3-201ENST00000268049 PAK3O75914 559 aaPredicted RBP10.29□□□□□ -0.76
USP3-201ENST00000268049 EVA1CP58658 441 aa10.29□□□□□ -0.76
USP3-201ENST00000268049 WDR43Q15061 677 aaKnown RBP eCLIP10.29□□□□□ -0.76
USP3-201ENST00000268049 MYH16Q9H6N6 1097 aa10.29□□□□□ -0.76
USP3-201ENST00000268049 KIAA0586Q9BVV6 1533 aa10.28□□□□□ -0.76
USP3-201ENST00000268049 ATF3P18847 181 aa10.28□□□□□ -0.76
USP3-201ENST00000268049 ANKRD30AQ9BXX3 1397 aa10.28□□□□□ -0.76
USP3-201ENST00000268049 PNNQ9H307 717 aaKnown RBP10.27□□□□□ -0.76
USP3-201ENST00000268049 SRPK2P78362 688 aaKnown RBP10.27□□□□□ -0.77
USP3-201ENST00000268049 PRDM2Q13029 1718 aa10.27□□□□□ -0.77
USP3-201ENST00000268049 KLHL34Q8N239 644 aa10.27□□□□□ -0.77
USP3-201ENST00000268049 RTN4Q9NQC3 1192 aaKnown RBP10.27□□□□□ -0.77
USP3-201ENST00000268049 GRIN2AQ12879 1464 aa10.27□□□□□ -0.77
USP3-201ENST00000268049 ERICH6BQ5W0A0 696 aa10.26□□□□□ -0.77
USP3-201ENST00000268049 NUDCQ9Y266 331 aa10.26□□□□□ -0.77
USP3-201ENST00000268049 CHMP4AQ9BY43 222 aa10.26□□□□□ -0.77
USP3-201ENST00000268049 WASHC2CQ9Y4E1 1318 aa10.26□□□□□ -0.77
USP3-201ENST00000268049 ERICH3Q5RHP9 1530 aa10.25□□□□□ -0.77
USP3-201ENST00000268049 HDGFL2Q7Z4V5 671 aaPredicted RBP10.22□□□□□ -0.77
USP3-201ENST00000268049 PPM1GO15355 546 aaPredicted RBP10.22□□□□□ -0.77
USP3-201ENST00000268049 ABCF1Q8NE71 845 aaKnown RBP eCLIP10.22□□□□□ -0.77
USP3-201ENST00000268049 PRXQ9BXM0 1461 aa10.22□□□□□ -0.77
USP3-201ENST00000268049 KIF21AQ7Z4S6 1674 aa10.21□□□□□ -0.77
USP3-201ENST00000268049 UACAQ9BZF9 1416 aa10.21□□□□□ -0.77
USP3-201ENST00000268049 NAP1L5Q96NT1 182 aaPredicted RBP10.21□□□□□ -0.77
USP3-201ENST00000268049 ANO8Q9HCE9 1232 aaPredicted RBP10.21□□□□□ -0.78
USP3-201ENST00000268049 NGDNQ8NEJ9 315 aaKnown RBP10.2□□□□□ -0.78
USP3-201ENST00000268049 NUP155O75694 1391 aa10.2□□□□□ -0.78
USP3-201ENST00000268049 CUL7Q14999 1698 aa10.2□□□□□ -0.78
USP3-201ENST00000268049 TRIM44Q96DX7 344 aaPredicted RBP10.2□□□□□ -0.78
USP3-201ENST00000268049 HSP90AA1P07900 732 aaKnown RBP10.19□□□□□ -0.78
USP3-201ENST00000268049 WDR62O43379 1518 aa10.19□□□□□ -0.78
USP3-201ENST00000268049 MAPK8IP3Q9UPT6 1336 aa10.19□□□□□ -0.78
USP3-201ENST00000268049 IQGAP2Q13576 1575 aa10.19□□□□□ -0.78
USP3-201ENST00000268049 PKD2Q13563 968 aa10.19□□□□□ -0.78
USP3-201ENST00000268049 KIF21BO75037 1637 aa10.18□□□□□ -0.78
USP3-201ENST00000268049 GOLGA6L2Q8N9W4 650 aaPredicted RBP10.18□□□□□ -0.78
USP3-201ENST00000268049 UPF2Q9HAU5 1272 aaKnown RBP10.18□□□□□ -0.78
USP3-201ENST00000268049 GTF2E1P29083 439 aaPredicted RBP10.18□□□□□ -0.78
USP3-201ENST00000268049 PPP1R1BQ9UD71 204 aaPredicted RBP10.18□□□□□ -0.78
USP3-201ENST00000268049 EFCAB5A4FU69 1503 aa10.17□□□□□ -0.78
USP3-201ENST00000268049 CASKIN1Q8WXD9 1431 aa10.17□□□□□ -0.78
USP3-201ENST00000268049 KRI1Q8N9T8 703 aaKnown RBP10.17□□□□□ -0.78
USP3-201ENST00000268049 NCLP19338 710 aaKnown RBP10.16□□□□□ -0.78
USP3-201ENST00000268049 BIVM-ERCC5R4GMW8 1640 aa10.15□□□□□ -0.78
USP3-201ENST00000268049 RTF1Q92541 710 aaKnown RBP10.14□□□□□ -0.79
USP3-201ENST00000268049 SETD5Q9C0A6 1442 aa10.14□□□□□ -0.79
USP3-201ENST00000268049 ARHGAP5Q13017 1502 aa10.14□□□□□ -0.79
USP3-201ENST00000268049 DEKP35659 375 aaKnown RBP10.14□□□□□ -0.79
USP3-201ENST00000268049 PIP4K2BP78356 416 aa10.14□□□□□ -0.79
USP3-201ENST00000268049 DCAF11Q8TEB1 546 aa10.14□□□□□ -0.79
USP3-201ENST00000268049 CCDC136Q96JN2 1154 aa10.14□□□□□ -0.79
USP3-201ENST00000268049 KNSTRNQ9Y448 316 aa10.14□□□□□ -0.79
USP3-201ENST00000268049 AFAP1Q8N556 730 aa10.13□□□□□ -0.79
USP3-201ENST00000268049 CARD11Q9BXL7 1154 aa10.13□□□□□ -0.79
USP3-201ENST00000268049 CWC22Q9HCG8 908 aaKnown RBP10.13□□□□□ -0.79
USP3-201ENST00000268049 MYOM3Q5VTT5 1437 aa10.12□□□□□ -0.79
USP3-201ENST00000268049 PSME1Q06323 249 aa10.11□□□□□ -0.79
USP3-201ENST00000268049 STK26Q9P289 416 aa10.11□□□□□ -0.79
USP3-201ENST00000268049 ISY1Q9ULR0 285 aaKnown RBP10.11□□□□□ -0.79
USP3-201ENST00000268049 FYCO1Q9BQS8 1478 aa10.11□□□□□ -0.79
USP3-201ENST00000268049 SOX12O15370 315 aa10.11□□□□□ -0.79
USP3-201ENST00000268049 THEMISQ8N1K5 641 aaPredicted RBP10.11□□□□□ -0.79
USP3-201ENST00000268049 DDRGK1Q96HY6 314 aa10.11□□□□□ -0.79
USP3-201ENST00000268049 MPHOSPH9Q99550 1183 aa10.11□□□□□ -0.79
USP3-201ENST00000268049 ZNF644Q9H582 1327 aaPredicted RBP10.11□□□□□ -0.79
USP3-201ENST00000268049 RAPGEF3O95398 923 aa10.1□□□□□ -0.79
USP3-201ENST00000268049 HNRNPUQ00839 825 aaKnown RBP eCLIP10.1□□□□□ -0.79
USP3-201ENST00000268049 CHMP4BQ9H444 224 aaKnown RBP10.1□□□□□ -0.79
USP3-201ENST00000268049 ZNF330Q9Y3S2 320 aaPredicted RBP10.1□□□□□ -0.79
USP3-201ENST00000268049 CD109Q6YHK3 1445 aa10.1□□□□□ -0.79
USP3-201ENST00000268049 TROQ12816 1431 aaPredicted RBP10.1□□□□□ -0.79
USP3-201ENST00000268049 PROSER2Q86WR7 435 aaPredicted RBP10.09□□□□□ -0.79
USP3-201ENST00000268049 EIF4G3O43432 1585 aaKnown RBP10.09□□□□□ -0.79
USP3-201ENST00000268049 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.09□□□□□ -0.79
USP3-201ENST00000268049 SIN3AQ96ST3 1273 aa10.09□□□□□ -0.79
USP3-201ENST00000268049 ARAP1Q96P48 1450 aa10.08□□□□□ -0.8
USP3-201ENST00000268049 AMER1Q5JTC6 1135 aaPredicted RBP10.08□□□□□ -0.8
USP3-201ENST00000268049 PLB1Q6P1J6 1458 aa10.08□□□□□ -0.8
USP3-201ENST00000268049 HECW1Q76N89 1606 aa10.08□□□□□ -0.8
USP3-201ENST00000268049 TOM1O60784 492 aa10.07□□□□□ -0.8
USP3-201ENST00000268049 ANKLE2Q86XL3 938 aa10.07□□□□□ -0.8
USP3-201ENST00000268049 SAFB2Q14151 953 aaKnown RBP eCLIP10.06□□□□□ -0.8
USP3-201ENST00000268049 HDAC5Q9UQL6 1122 aa10.06□□□□□ -0.8
USP3-201ENST00000268049 PLEKHH2Q8IVE3 1493 aa10.06□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 6.7 ms