RNA–Protein interactions for RNA: ENST00000264883.7

NUP54-201, Transcript of nucleoporin 54, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NUP54, Length 2,367 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-201ENST00000264883 CARMIL2Q6F5E8 1435 aa18.04■□□□□ 0.48
NUP54-201ENST00000264883 RTL5Q5HYW3 569 aaPredicted RBP18.02■□□□□ 0.48
NUP54-201ENST00000264883 HIRIP3Q9BW71 556 aaPredicted RBP18.02■□□□□ 0.48
NUP54-201ENST00000264883 SHROOM2Q13796 1616 aa18.02■□□□□ 0.48
NUP54-201ENST00000264883 PTPN23Q9H3S7 1636 aa18.02■□□□□ 0.48
NUP54-201ENST00000264883 EPRSP07814 1512 aaKnown RBP18.01■□□□□ 0.47
NUP54-201ENST00000264883 UBE2Q2Q8WVN8 375 aa18.01■□□□□ 0.47
NUP54-201ENST00000264883 IL27Q8NEV9 243 aa18■□□□□ 0.47
NUP54-201ENST00000264883 RAPGEF6Q8TEU7 1601 aa17.99■□□□□ 0.47
NUP54-201ENST00000264883 NUP153P49790 1475 aaKnown RBP17.98■□□□□ 0.47
NUP54-201ENST00000264883 CLASP1Q7Z460 1538 aa17.98■□□□□ 0.47
NUP54-201ENST00000264883 MAGI3Q5TCQ9 1506 aa17.97■□□□□ 0.47
NUP54-201ENST00000264883 EHBP1L1Q8N3D4 1523 aa17.97■□□□□ 0.47
NUP54-201ENST00000264883 PRG4Q92954 1404 aaPredicted RBP17.96■□□□□ 0.47
NUP54-201ENST00000264883 CDK13Q14004 1512 aaKnown RBP17.95■□□□□ 0.46
NUP54-201ENST00000264883 B4GALNT3Q6L9W6 998 aa17.95■□□□□ 0.46
NUP54-201ENST00000264883 MTUS2Q5JR59 1369 aa17.95■□□□□ 0.46
NUP54-201ENST00000264883 RTN4Q9NQC3 1192 aaKnown RBP17.95■□□□□ 0.46
NUP54-201ENST00000264883 SUPT6HQ7KZ85 1726 aaKnown RBP17.94■□□□□ 0.46
NUP54-201ENST00000264883 MYOM3Q5VTT5 1437 aa17.94■□□□□ 0.46
NUP54-201ENST00000264883 OSCARQ8IYS5 282 aa17.94■□□□□ 0.46
NUP54-201ENST00000264883 PLB1Q6P1J6 1458 aa17.94■□□□□ 0.46
NUP54-201ENST00000264883 NAIPQ13075 1403 aa17.93■□□□□ 0.46
NUP54-201ENST00000264883 ZBTB4Q9P1Z0 1013 aaPredicted RBP17.93■□□□□ 0.46
NUP54-201ENST00000264883 ARHGEF11O15085 1522 aa17.92■□□□□ 0.46
NUP54-201ENST00000264883 ABCA8O94911 1581 aa17.92■□□□□ 0.46
NUP54-201ENST00000264883 IPO9Q96P70 1041 aaKnown RBP17.9■□□□□ 0.46
NUP54-201ENST00000264883 NCOA2Q15596 1464 aa17.9■□□□□ 0.46
NUP54-201ENST00000264883 AKNAQ7Z591 1439 aa17.9■□□□□ 0.46
NUP54-201ENST00000264883 KDM5BQ9UGL1 1544 aa17.9■□□□□ 0.46
NUP54-201ENST00000264883 ANP32AP39687 249 aaKnown RBP17.9■□□□□ 0.46
NUP54-201ENST00000264883 GCC2Q8IWJ2 1684 aa17.89■□□□□ 0.45
NUP54-201ENST00000264883 PTPRKQ15262 1439 aa17.88■□□□□ 0.45
NUP54-201ENST00000264883 ZBTB47Q9UFB7 747 aaPredicted RBP17.88■□□□□ 0.45
NUP54-201ENST00000264883 ERCC6L2Q5T890 1561 aa17.87■□□□□ 0.45
NUP54-201ENST00000264883 PTPRGP23470 1445 aa17.86■□□□□ 0.45
NUP54-201ENST00000264883 TCOF1Q13428 1488 aaKnown RBP17.86■□□□□ 0.45
NUP54-201ENST00000264883 ARID3CA6NKF2 412 aa17.83■□□□□ 0.44
NUP54-201ENST00000264883 WASHC2AQ641Q2 1341 aa17.82■□□□□ 0.44
NUP54-201ENST00000264883 ATP10BO94823 1461 aa17.8■□□□□ 0.44
NUP54-201ENST00000264883 CNTLNQ9NXG0 1405 aa17.79■□□□□ 0.44
NUP54-201ENST00000264883 TROQ12816 1431 aaPredicted RBP17.79■□□□□ 0.44
NUP54-201ENST00000264883 ADCY10Q96PN6 1610 aa17.76■□□□□ 0.43
NUP54-201ENST00000264883 EIF4G2P78344 907 aaKnown RBP eCLIP17.76■□□□□ 0.43
NUP54-201ENST00000264883 MIA2Q96PC5 1412 aa17.76■□□□□ 0.43
NUP54-201ENST00000264883 C11orf95C9JLR9 678 aaPredicted RBP17.74■□□□□ 0.43
NUP54-201ENST00000264883 ABCC2Q92887 1545 aa17.73■□□□□ 0.43
NUP54-201ENST00000264883 HSPA5P11021 654 aaKnown RBP17.73■□□□□ 0.43
NUP54-201ENST00000264883 USP35Q9P2H5 1018 aa17.72■□□□□ 0.43
NUP54-201ENST00000264883 KIF14Q15058 1648 aa17.71■□□□□ 0.43
NUP54-201ENST00000264883 NCOA1Q15788 1441 aa17.71■□□□□ 0.43
NUP54-201ENST00000264883 POLR1AO95602 1720 aaPredicted RBP17.71■□□□□ 0.43
NUP54-201ENST00000264883 WASHC2CQ9Y4E1 1318 aa17.71■□□□□ 0.43
NUP54-201ENST00000264883 ZBED9Q6R2W3 1325 aa17.7■□□□□ 0.42
NUP54-201ENST00000264883 DENND4BO75064 1496 aaPredicted RBP17.7■□□□□ 0.42
NUP54-201ENST00000264883 NEFMP07197 916 aa17.69■□□□□ 0.42
NUP54-201ENST00000264883 UHRF1BP1LA0JNW5 1464 aa17.69■□□□□ 0.42
NUP54-201ENST00000264883 CCDC184Q52MB2 194 aa17.67■□□□□ 0.42
NUP54-201ENST00000264883 EIF5BO60841 1220 aaKnown RBP17.67■□□□□ 0.42
NUP54-201ENST00000264883 PLEKHD1A6NEE1 506 aa17.66■□□□□ 0.42
NUP54-201ENST00000264883 FAM9BQ8IZU0 186 aa17.66■□□□□ 0.42
NUP54-201ENST00000264883 CCDC7Q96M83 1385 aa17.66■□□□□ 0.42
NUP54-201ENST00000264883 ABCC10Q5T3U5 1492 aa17.66■□□□□ 0.42
NUP54-201ENST00000264883 ROCK1Q13464 1354 aa17.66■□□□□ 0.42
NUP54-201ENST00000264883 GPATCH8Q9UKJ3 1502 aaKnown RBP17.65■□□□□ 0.42
NUP54-201ENST00000264883 ITSN2Q9NZM3 1697 aa17.65■□□□□ 0.42
NUP54-201ENST00000264883 LAS1LQ9Y4W2 734 aaKnown RBP17.64■□□□□ 0.41
NUP54-201ENST00000264883 RPRD2Q5VT52 1461 aaKnown RBP17.63■□□□□ 0.41
NUP54-201ENST00000264883 PRKRIP1Q9H875 184 aaPredicted RBP17.63■□□□□ 0.41
NUP54-201ENST00000264883 MPHOSPH9Q99550 1183 aa17.62■□□□□ 0.41
NUP54-201ENST00000264883 RRP7BPQ9NSQ0 103 aa17.61■□□□□ 0.41
NUP54-201ENST00000264883 BRPF3Q9ULD4 1205 aa17.61■□□□□ 0.41
NUP54-201ENST00000264883 KDM6BO15054 1643 aa17.61■□□□□ 0.41
NUP54-201ENST00000264883 CDC42BPAQ5VT25 1732 aa17.61■□□□□ 0.41
NUP54-201ENST00000264883 ZCCHC11Q5TAX3 1644 aaKnown RBP17.6■□□□□ 0.41
NUP54-201ENST00000264883 MRS2Q9HD23 443 aa17.6■□□□□ 0.41
NUP54-201ENST00000264883 RIMBP3CA6NJZ7 1639 aa17.59■□□□□ 0.41
NUP54-201ENST00000264883 RIMBP3BA6NNM3 1639 aa17.59■□□□□ 0.41
NUP54-201ENST00000264883 RIMBP3Q9UFD9 1639 aa17.59■□□□□ 0.41
NUP54-201ENST00000264883 PPM1GO15355 546 aaPredicted RBP17.59■□□□□ 0.41
NUP54-201ENST00000264883 NPM2Q86SE8 214 aaKnown RBP17.59■□□□□ 0.41
NUP54-201ENST00000264883 TEX14Q8IWB6 1497 aa17.59■□□□□ 0.41
NUP54-201ENST00000264883 ANKRD30BQ9BXX2 1392 aa17.58■□□□□ 0.41
NUP54-201ENST00000264883 L3MBTL2Q969R5 705 aa17.58■□□□□ 0.41
NUP54-201ENST00000264883 DNMT1P26358 1616 aaKnown RBP17.58■□□□□ 0.41
NUP54-201ENST00000264883 SPATA31E1Q6ZUB1 1445 aa17.57■□□□□ 0.4
NUP54-201ENST00000264883 SMG6Q86US8 1419 aaKnown RBP17.57■□□□□ 0.4
NUP54-201ENST00000264883 CAMSAP2Q08AD1 1489 aa17.56■□□□□ 0.4
NUP54-201ENST00000264883 ZNF644Q9H582 1327 aaPredicted RBP17.56■□□□□ 0.4
NUP54-201ENST00000264883 DAPK1P53355 1430 aa17.55■□□□□ 0.4
NUP54-201ENST00000264883 CFDP1Q9UEE9 299 aaPredicted RBP17.55■□□□□ 0.4
NUP54-201ENST00000264883 CHIC2Q9UKJ5 165 aa17.54■□□□□ 0.4
NUP54-201ENST00000264883 RNF123Q5XPI4 1314 aa17.54■□□□□ 0.4
NUP54-201ENST00000264883 ABCC5O15440 1437 aa17.54■□□□□ 0.4
NUP54-201ENST00000264883 GSE1Q14687 1217 aa17.53■□□□□ 0.4
NUP54-201ENST00000264883 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP17.52■□□□□ 0.45e-6■□□□□ 11
NUP54-201ENST00000264883 PREX2Q70Z35 1606 aa17.52■□□□□ 0.39
NUP54-201ENST00000264883 TTC37Q6PGP7 1564 aa17.52■□□□□ 0.39
NUP54-201ENST00000264883 ARID4BQ4LE39 1312 aaPredicted RBP17.52■□□□□ 0.39
NUP54-201ENST00000264883 PKNOX2Q96KN3 472 aa17.51■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms