RNA–Protein interactions for RNA: ENST00000263856.8

CHMP3-201, Transcript of charged multivesicular body protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CHMP3, Length 3,171 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-201ENST00000263856 SALL2Q9Y467 1007 aaPredicted RBP16.89■□□□□ 0.3
CHMP3-201ENST00000263856 DENND4BO75064 1496 aaPredicted RBP16.88■□□□□ 0.29
CHMP3-201ENST00000263856 FANCIQ9NVI1 1328 aa16.88■□□□□ 0.29
CHMP3-201ENST00000263856 SAMD9Q5K651 1589 aa16.87■□□□□ 0.29
CHMP3-201ENST00000263856 ZBED9Q6R2W3 1325 aa16.85■□□□□ 0.29
CHMP3-201ENST00000263856 KDM2AQ9Y2K7 1162 aa16.85■□□□□ 0.29
CHMP3-201ENST00000263856 CCDC136Q96JN2 1154 aa16.84■□□□□ 0.29
CHMP3-201ENST00000263856 EPRSP07814 1512 aaKnown RBP16.84■□□□□ 0.29
CHMP3-201ENST00000263856 AKNAQ7Z591 1439 aa16.84■□□□□ 0.29
CHMP3-201ENST00000263856 NCOA1Q15788 1441 aa16.83■□□□□ 0.28
CHMP3-201ENST00000263856 THOC2Q8NI27 1593 aaKnown RBP16.82■□□□□ 0.28
CHMP3-201ENST00000263856 LAMC3Q9Y6N6 1575 aa16.82■□□□□ 0.28
CHMP3-201ENST00000263856 FBLN2P98095 1184 aa16.81■□□□□ 0.28
CHMP3-201ENST00000263856 HECW1Q76N89 1606 aa16.81■□□□□ 0.28
CHMP3-201ENST00000263856 TMC1Q8TDI8 760 aa16.8■□□□□ 0.28
CHMP3-201ENST00000263856 ABCA5Q8WWZ7 1642 aa16.8■□□□□ 0.28
CHMP3-201ENST00000263856 CFDP1Q9UEE9 299 aaPredicted RBP16.79■□□□□ 0.28
CHMP3-201ENST00000263856 PDS5BQ9NTI5 1447 aa16.79■□□□□ 0.28
CHMP3-201ENST00000263856 ANKRD30BQ9BXX2 1392 aa16.79■□□□□ 0.28
CHMP3-201ENST00000263856 GCC2Q8IWJ2 1684 aa16.78■□□□□ 0.28
CHMP3-201ENST00000263856 PKD2Q13563 968 aa16.78■□□□□ 0.28
CHMP3-201ENST00000263856 NPM2Q86SE8 214 aaKnown RBP16.77■□□□□ 0.28
CHMP3-201ENST00000263856 ERICH6BQ5W0A0 696 aa16.77■□□□□ 0.28
CHMP3-201ENST00000263856 DAPK1P53355 1430 aa16.77■□□□□ 0.27
CHMP3-201ENST00000263856 TCOF1Q13428 1488 aaKnown RBP16.76■□□□□ 0.27
CHMP3-201ENST00000263856 PAK3O75914 559 aaPredicted RBP16.75■□□□□ 0.27
CHMP3-201ENST00000263856 RPRD2Q5VT52 1461 aaKnown RBP16.75■□□□□ 0.27
CHMP3-201ENST00000263856 USP47Q96K76 1375 aa16.74■□□□□ 0.27
CHMP3-201ENST00000263856 IQGAP2Q13576 1575 aa16.74■□□□□ 0.27
CHMP3-201ENST00000263856 NOP58Q9Y2X3 529 aaKnown RBP16.74■□□□□ 0.27
CHMP3-201ENST00000263856 ARHGEF11O15085 1522 aa16.74■□□□□ 0.27
CHMP3-201ENST00000263856 CARD11Q9BXL7 1154 aa16.73■□□□□ 0.27
CHMP3-201ENST00000263856 NUDCQ9Y266 331 aa16.73■□□□□ 0.27
CHMP3-201ENST00000263856 ABCC5O15440 1437 aa16.73■□□□□ 0.27
CHMP3-201ENST00000263856 MIA2Q96PC5 1412 aa16.73■□□□□ 0.27
CHMP3-201ENST00000263856 DEKP35659 375 aaKnown RBP16.72■□□□□ 0.27
CHMP3-201ENST00000263856 ANP32AP39687 249 aaKnown RBP16.71■□□□□ 0.26
CHMP3-201ENST00000263856 KIF21AQ7Z4S6 1674 aa16.71■□□□□ 0.26
CHMP3-201ENST00000263856 TEX14Q8IWB6 1497 aa16.7■□□□□ 0.26
CHMP3-201ENST00000263856 PRG4Q92954 1404 aaPredicted RBP16.68■□□□□ 0.26
CHMP3-201ENST00000263856 DCAF11Q8TEB1 546 aa16.67■□□□□ 0.26
CHMP3-201ENST00000263856 WDR62O43379 1518 aa16.67■□□□□ 0.26
CHMP3-201ENST00000263856 ST20-MTHFSA0A0A6YYL1 179 aa16.66■□□□□ 0.26
CHMP3-201ENST00000263856 RGL3Q3MIN7 710 aa16.65■□□□□ 0.26
CHMP3-201ENST00000263856 SPATA31E1Q6ZUB1 1445 aa16.64■□□□□ 0.25
CHMP3-201ENST00000263856 ZBTB47Q9UFB7 747 aaPredicted RBP16.64■□□□□ 0.25
CHMP3-201ENST00000263856 NUP155O75694 1391 aa16.63■□□□□ 0.25
CHMP3-201ENST00000263856 RTL5Q5HYW3 569 aaPredicted RBP16.63■□□□□ 0.25
CHMP3-201ENST00000263856 DHX29Q7Z478 1369 aaKnown RBP16.63■□□□□ 0.25
CHMP3-201ENST00000263856 PBRM1Q86U86 1689 aa16.63■□□□□ 0.25
CHMP3-201ENST00000263856 ROCK1Q13464 1354 aa16.63■□□□□ 0.25
CHMP3-201ENST00000263856 SMG6Q86US8 1419 aaKnown RBP16.63■□□□□ 0.25
CHMP3-201ENST00000263856 CHMP7Q8WUX9 453 aaPredicted RBP16.62■□□□□ 0.25
CHMP3-201ENST00000263856 PNISRQ8TF01 805 aaKnown RBP16.61■□□□□ 0.25
CHMP3-201ENST00000263856 ZNF608Q9ULD9 1512 aaPredicted RBP16.61■□□□□ 0.25
CHMP3-201ENST00000263856 TARBP1Q13395 1621 aaKnown RBP16.61■□□□□ 0.25
CHMP3-201ENST00000263856 EXOC6Q8TAG9 804 aa16.61■□□□□ 0.25
CHMP3-201ENST00000263856 PZPP20742 1482 aa16.6■□□□□ 0.25
CHMP3-201ENST00000263856 DNMT1P26358 1616 aaKnown RBP16.6■□□□□ 0.25
CHMP3-201ENST00000263856 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.6■□□□□ 0.258e-8■■■□□ 17.3
CHMP3-201ENST00000263856 NUP153P49790 1475 aaKnown RBP16.6■□□□□ 0.25
CHMP3-201ENST00000263856 CAMSAP2Q08AD1 1489 aa16.6■□□□□ 0.25
CHMP3-201ENST00000263856 BCORL1Q5H9F3 1711 aa16.59■□□□□ 0.25
CHMP3-201ENST00000263856 KIAA1107Q9UPP5 1409 aa16.59■□□□□ 0.25
CHMP3-201ENST00000263856 CC2D1BQ5T0F9 858 aaKnown RBP16.58■□□□□ 0.24
CHMP3-201ENST00000263856 ADAMTS12P58397 1594 aa16.58■□□□□ 0.24
CHMP3-201ENST00000263856 TSPY4P0CV99 314 aa16.58■□□□□ 0.24
CHMP3-201ENST00000263856 TSPY10P0CW01 314 aa16.58■□□□□ 0.24
CHMP3-201ENST00000263856 LAS1LQ9Y4W2 734 aaKnown RBP16.57■□□□□ 0.24
CHMP3-201ENST00000263856 ANKRD30AQ9BXX3 1397 aa16.57■□□□□ 0.24
CHMP3-201ENST00000263856 HNRNPMP52272 730 aaKnown RBP eCLIP16.57■□□□□ 0.24
CHMP3-201ENST00000263856 PLB1Q6P1J6 1458 aa16.57■□□□□ 0.24
CHMP3-201ENST00000263856 IPO9Q96P70 1041 aaKnown RBP16.57■□□□□ 0.24
CHMP3-201ENST00000263856 PLIN1O60240 522 aa16.56■□□□□ 0.24
CHMP3-201ENST00000263856 ANKRD50Q9ULJ7 1429 aa16.55■□□□□ 0.24
CHMP3-201ENST00000263856 SKAP1Q86WV1 359 aa16.55■□□□□ 0.24
CHMP3-201ENST00000263856 PLEKHD1A6NEE1 506 aa16.54■□□□□ 0.24
CHMP3-201ENST00000263856 RCAN3Q9UKA8 241 aa16.54■□□□□ 0.24
CHMP3-201ENST00000263856 ROCK2O75116 1388 aaKnown RBP16.54■□□□□ 0.24
CHMP3-201ENST00000263856 KIF15Q9NS87 1388 aa16.54■□□□□ 0.24
CHMP3-201ENST00000263856 CDCA7LQ96GN5 454 aa16.54■□□□□ 0.24
CHMP3-201ENST00000263856 RRP1P56182 461 aaKnown RBP16.53■□□□□ 0.24
CHMP3-201ENST00000263856 DISP1Q96F81 1524 aa16.53■□□□□ 0.24
CHMP3-201ENST00000263856 TROQ12816 1431 aaPredicted RBP16.52■□□□□ 0.24
CHMP3-201ENST00000263856 MYBBP1AQ9BQG0 1328 aaKnown RBP16.52■□□□□ 0.24
CHMP3-201ENST00000263856 KIAA0556O60303 1618 aa16.52■□□□□ 0.24
CHMP3-201ENST00000263856 RAPGEF6Q8TEU7 1601 aa16.52■□□□□ 0.24
CHMP3-201ENST00000263856 MYT1LQ9UL68 1186 aa16.5■□□□□ 0.23
CHMP3-201ENST00000263856 KIF14Q15058 1648 aa16.5■□□□□ 0.23
CHMP3-201ENST00000263856 GPATCH8Q9UKJ3 1502 aaKnown RBP16.5■□□□□ 0.23
CHMP3-201ENST00000263856 NBPF1Q3BBV0 1214 aa16.49■□□□□ 0.23
CHMP3-201ENST00000263856 KIAA0586Q9BVV6 1533 aa16.49■□□□□ 0.23
CHMP3-201ENST00000263856 POLR1AO95602 1720 aaPredicted RBP16.48■□□□□ 0.23
CHMP3-201ENST00000263856 RALBP1Q15311 655 aa16.47■□□□□ 0.23
CHMP3-201ENST00000263856 KDM5CP41229 1560 aa16.47■□□□□ 0.23
CHMP3-201ENST00000263856 MRC2Q9UBG0 1479 aa16.46■□□□□ 0.23
CHMP3-201ENST00000263856 JPH4Q96JJ6 628 aa16.46■□□□□ 0.23
CHMP3-201ENST00000263856 KTN1Q86UP2 1357 aaKnown RBP16.46■□□□□ 0.22
CHMP3-201ENST00000263856 RNF123Q5XPI4 1314 aa16.45■□□□□ 0.22
CHMP3-201ENST00000263856 RTN4Q9NQC3 1192 aaKnown RBP16.45■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 54.7 ms