RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 NOM1Q5C9Z4 860 aaKnown RBP17.44■□□□□ 0.38
CCDC88A-201ENST00000263630 CALD1Q05682 793 aaKnown RBP17.44■□□□□ 0.38
CCDC88A-201ENST00000263630 SPRYD3Q8NCJ5 442 aa17.43■□□□□ 0.38
CCDC88A-201ENST00000263630 DCAF1Q9Y4B6 1507 aa17.43■□□□□ 0.38
CCDC88A-201ENST00000263630 IPO8O15397 1037 aaKnown RBP17.42■□□□□ 0.38
CCDC88A-201ENST00000263630 CREBRFQ8IUR6 639 aa17.42■□□□□ 0.38
CCDC88A-201ENST00000263630 TPD52L1Q16890 204 aaPredicted RBP17.42■□□□□ 0.38
CCDC88A-201ENST00000263630 POGKQ9P215 609 aa17.41■□□□□ 0.38
CCDC88A-201ENST00000263630 RTF1Q92541 710 aaKnown RBP17.4■□□□□ 0.38
CCDC88A-201ENST00000263630 CDR1P51861 262 aa17.4■□□□□ 0.38
CCDC88A-201ENST00000263630 ABCF1Q8NE71 845 aaKnown RBP eCLIP17.39■□□□□ 0.37
CCDC88A-201ENST00000263630 HDAC5Q9UQL6 1122 aa17.39■□□□□ 0.37
CCDC88A-201ENST00000263630 U2SURPO15042 1029 aaKnown RBP17.38■□□□□ 0.37
CCDC88A-201ENST00000263630 CHMP4CQ96CF2 233 aa17.38■□□□□ 0.37
CCDC88A-201ENST00000263630 RSPH6AQ9H0K4 717 aa17.38■□□□□ 0.37
CCDC88A-201ENST00000263630 ZNF771Q7L3S4 317 aaPredicted RBP17.37■□□□□ 0.37
CCDC88A-201ENST00000263630 GZF1Q9H116 711 aaPredicted RBP17.37■□□□□ 0.37
CCDC88A-201ENST00000263630 RSF1Q96T23 1441 aaPredicted RBP17.37■□□□□ 0.37
CCDC88A-201ENST00000263630 PES1O00541 588 aaKnown RBP17.36■□□□□ 0.37
CCDC88A-201ENST00000263630 MARCH6O60337 910 aa17.36■□□□□ 0.37
CCDC88A-201ENST00000263630 PABPN1Q86U42 306 aaKnown RBP eCLIP17.35■□□□□ 0.37
CCDC88A-201ENST00000263630 GORABQ5T7V8 394 aa17.35■□□□□ 0.37
CCDC88A-201ENST00000263630 GOLGA6L19H0YKK7 550 aa17.34■□□□□ 0.37
CCDC88A-201ENST00000263630 CARD11Q9BXL7 1154 aa17.34■□□□□ 0.37
CCDC88A-201ENST00000263630 IPO7O95373 1038 aaKnown RBP17.34■□□□□ 0.37
CCDC88A-201ENST00000263630 TCERG1O14776 1098 aaKnown RBP17.33■□□□□ 0.37
CCDC88A-201ENST00000263630 VPS53Q5VIR6 699 aa17.33■□□□□ 0.37
CCDC88A-201ENST00000263630 AK7Q96M32 723 aa17.33■□□□□ 0.37
CCDC88A-201ENST00000263630 FBXO3Q9UK99 471 aa17.33■□□□□ 0.36
CCDC88A-201ENST00000263630 CCAR2Q8N163 923 aaKnown RBP17.33■□□□□ 0.36
CCDC88A-201ENST00000263630 CCDC191Q8NCU4 936 aa17.33■□□□□ 0.36
CCDC88A-201ENST00000263630 ZBTB4Q9P1Z0 1013 aaPredicted RBP17.32■□□□□ 0.36
CCDC88A-201ENST00000263630 G3V3G9 751 aa17.32■□□□□ 0.36
CCDC88A-201ENST00000263630 DCAF8Q5TAQ9 597 aa17.32■□□□□ 0.36
CCDC88A-201ENST00000263630 MAP7D2Q96T17 732 aa17.31■□□□□ 0.36
CCDC88A-201ENST00000263630 KIF16BQ96L93 1317 aa17.31■□□□□ 0.36
CCDC88A-201ENST00000263630 SF3A1Q15459 793 aaKnown RBP17.31■□□□□ 0.36
CCDC88A-201ENST00000263630 HIRIP3Q9BW71 556 aaPredicted RBP17.31■□□□□ 0.36
CCDC88A-201ENST00000263630 RUFY1Q96T51 708 aa17.31■□□□□ 0.36
CCDC88A-201ENST00000263630 TCEAL9Q9UHQ7 104 aa17.31■□□□□ 0.36
CCDC88A-201ENST00000263630 SENP3Q9H4L4 574 aaPredicted RBP17.3■□□□□ 0.36
CCDC88A-201ENST00000263630 CNKSR2Q8WXI2 1034 aa17.3■□□□□ 0.36
CCDC88A-201ENST00000263630 DCTN1Q14203 1278 aa17.3■□□□□ 0.36
CCDC88A-201ENST00000263630 RGL3Q3MIN7 710 aa17.29■□□□□ 0.36
CCDC88A-201ENST00000263630 ACBD3Q9H3P7 528 aa17.29■□□□□ 0.36
CCDC88A-201ENST00000263630 HDGFP51858 240 aaKnown RBP17.29■□□□□ 0.36
CCDC88A-201ENST00000263630 DDX11L8A8MPP1 907 aa17.28■□□□□ 0.36
CCDC88A-201ENST00000263630 ANKRD20A12PQ8NF67 263 aa17.28■□□□□ 0.36
CCDC88A-201ENST00000263630 RWDD1Q9H446 243 aaPredicted RBP17.28■□□□□ 0.36
CCDC88A-201ENST00000263630 TAF7LQ5H9L4 462 aa17.28■□□□□ 0.36
CCDC88A-201ENST00000263630 ST18O60284 1047 aa17.27■□□□□ 0.36
CCDC88A-201ENST00000263630 APPP05067 770 aa17.27■□□□□ 0.36
CCDC88A-201ENST00000263630 ATP6V1DQ9Y5K8 247 aa17.27■□□□□ 0.36
CCDC88A-201ENST00000263630 B4GALNT3Q6L9W6 998 aa17.26■□□□□ 0.35
CCDC88A-201ENST00000263630 RDXP35241 583 aaKnown RBP17.26■□□□□ 0.35
CCDC88A-201ENST00000263630 PMFBP1Q8TBY8 1022 aa17.25■□□□□ 0.35
CCDC88A-201ENST00000263630 HOOK1Q9UJC3 728 aaKnown RBP17.24■□□□□ 0.35
CCDC88A-201ENST00000263630 TRIM6-TRIM34B2RNG4 842 aa17.24■□□□□ 0.35
CCDC88A-201ENST00000263630 ZRSR2Q15696 482 aaKnown RBP17.23■□□□□ 0.35
CCDC88A-201ENST00000263630 H3BQV1 296 aa17.23■□□□□ 0.35
CCDC88A-201ENST00000263630 IFFO2Q5TF58 517 aa17.23■□□□□ 0.35
CCDC88A-201ENST00000263630 BECN2A8MW95 431 aa17.23■□□□□ 0.35
CCDC88A-201ENST00000263630 CCDC47Q96A33 483 aaKnown RBP17.22■□□□□ 0.35
CCDC88A-201ENST00000263630 CWC15Q9P013 229 aaKnown RBP17.22■□□□□ 0.35
CCDC88A-201ENST00000263630 TMF1P82094 1093 aa17.22■□□□□ 0.35
CCDC88A-201ENST00000263630 CC2D1BQ5T0F9 858 aaKnown RBP17.22■□□□□ 0.35
CCDC88A-201ENST00000263630 UTP3Q9NQZ2 479 aaKnown RBP eCLIP17.22■□□□□ 0.355e-6■■■■■ 52.9
CCDC88A-201ENST00000263630 MYO6Q9UM54 1294 aa17.22■□□□□ 0.35
CCDC88A-201ENST00000263630 RRP7BPQ9NSQ0 103 aa17.22■□□□□ 0.35
CCDC88A-201ENST00000263630 AKAP17AQ02040 695 aaKnown RBP17.21■□□□□ 0.35
CCDC88A-201ENST00000263630 SLKQ9H2G2 1235 aaPredicted RBP17.21■□□□□ 0.35
CCDC88A-201ENST00000263630 ODF2Q5BJF6 829 aa17.21■□□□□ 0.35
CCDC88A-201ENST00000263630 SPAG9O60271 1321 aaKnown RBP17.21■□□□□ 0.35
CCDC88A-201ENST00000263630 SKOR2Q2VWA4 1001 aaPredicted RBP17.2■□□□□ 0.34
CCDC88A-201ENST00000263630 ARGLU1Q9NWB6 273 aaPredicted RBP17.2■□□□□ 0.34
CCDC88A-201ENST00000263630 APBB1O00213 710 aa17.19■□□□□ 0.34
CCDC88A-201ENST00000263630 CHMP3Q9Y3E7 222 aa17.19■□□□□ 0.34
CCDC88A-201ENST00000263630 NEXNQ0ZGT2 675 aa17.18■□□□□ 0.34
CCDC88A-201ENST00000263630 CHMP7Q8WUX9 453 aaPredicted RBP17.18■□□□□ 0.34
CCDC88A-201ENST00000263630 PCMTD1Q96MG8 357 aaPredicted RBP17.18■□□□□ 0.34
CCDC88A-201ENST00000263630 CCDC180Q9P1Z9 1646 aa17.18■□□□□ 0.34
CCDC88A-201ENST00000263630 HSP90B2PQ58FF3 399 aa17.18■□□□□ 0.34
CCDC88A-201ENST00000263630 STK11IPQ8N1F8 1099 aa17.18■□□□□ 0.34
CCDC88A-201ENST00000263630 CCDC173Q0VFZ6 552 aa17.17■□□□□ 0.34
CCDC88A-201ENST00000263630 ITPRIPQ8IWB1 547 aa17.17■□□□□ 0.34
CCDC88A-201ENST00000263630 KANK1Q14678 1352 aa17.17■□□□□ 0.34
CCDC88A-201ENST00000263630 ANO8Q9HCE9 1232 aaPredicted RBP17.17■□□□□ 0.34
CCDC88A-201ENST00000263630 WWC1Q8IX03 1113 aa17.17■□□□□ 0.34
CCDC88A-201ENST00000263630 PLEKHD1A6NEE1 506 aa17.16■□□□□ 0.34
CCDC88A-201ENST00000263630 LRRFIP1Q32MZ4 808 aaKnown RBP17.16■□□□□ 0.34
CCDC88A-201ENST00000263630 FAM184AQ8NB25 1140 aa17.16■□□□□ 0.34
CCDC88A-201ENST00000263630 STK31Q9BXU1 1019 aa17.15■□□□□ 0.34
CCDC88A-201ENST00000263630 CT47A1Q5JQC4 288 aaPredicted RBP17.15■□□□□ 0.34
CCDC88A-201ENST00000263630 MORC1Q86VD1 984 aa17.15■□□□□ 0.34
CCDC88A-201ENST00000263630 AMOTL1Q8IY63 956 aa17.14■□□□□ 0.33
CCDC88A-201ENST00000263630 VSIG10Q8N0Z9 540 aa17.14■□□□□ 0.33
CCDC88A-201ENST00000263630 H0YHG0 523 aa17.14■□□□□ 0.33
CCDC88A-201ENST00000263630 FRAT2O75474 233 aaPredicted RBP17.13■□□□□ 0.33
CCDC88A-201ENST00000263630 HOMER1Q86YM7 354 aa17.13■□□□□ 0.33
CCDC88A-201ENST00000263630 ABCC9O60706 1549 aa17.13■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms