RNA–Protein interactions for RNA: ENST00000263388.6

NOTCH3-201, Transcript of notch 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NOTCH3, Length 8,666 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NOTCH3-201ENST00000263388 SETD5Q9C0A6 1442 aa22.13■■□□□ 1.13
NOTCH3-201ENST00000263388 IPO8O15397 1037 aaKnown RBP22.13■■□□□ 1.13
NOTCH3-201ENST00000263388 DEKP35659 375 aaKnown RBP22.13■■□□□ 1.13
NOTCH3-201ENST00000263388 DCAF11Q8TEB1 546 aa22.12■■□□□ 1.13
NOTCH3-201ENST00000263388 SIN3AQ96ST3 1273 aa22.12■■□□□ 1.13
NOTCH3-201ENST00000263388 KIAA1211Q6ZU35 1233 aa22.12■■□□□ 1.13
NOTCH3-201ENST00000263388 GNL2Q13823 731 aaKnown RBP22.1■■□□□ 1.13
NOTCH3-201ENST00000263388 LMOD2Q6P5Q4 547 aa22.1■■□□□ 1.13
NOTCH3-201ENST00000263388 SYAP1Q96A49 352 aaPredicted RBP22.1■■□□□ 1.13
NOTCH3-201ENST00000263388 CALD1Q05682 793 aaKnown RBP22.09■■□□□ 1.13
NOTCH3-201ENST00000263388 HDGFP51858 240 aaKnown RBP22.09■■□□□ 1.13
NOTCH3-201ENST00000263388 NOC3LQ8WTT2 800 aaKnown RBP22.07■■□□□ 1.12
NOTCH3-201ENST00000263388 RTF1Q92541 710 aaKnown RBP22.06■■□□□ 1.12
NOTCH3-201ENST00000263388 MORC1Q86VD1 984 aa22.06■■□□□ 1.12
NOTCH3-201ENST00000263388 TNNT3P45378 269 aaPredicted RBP22.06■■□□□ 1.12
NOTCH3-201ENST00000263388 AMER1Q5JTC6 1135 aaPredicted RBP22.05■■□□□ 1.12
NOTCH3-201ENST00000263388 RBM19Q9Y4C8 960 aaKnown RBP22.05■■□□□ 1.12
NOTCH3-201ENST00000263388 USP35Q9P2H5 1018 aa22.04■■□□□ 1.12
NOTCH3-201ENST00000263388 SRPK2P78362 688 aaKnown RBP22.04■■□□□ 1.12
NOTCH3-201ENST00000263388 HTATSF1O43719 755 aaKnown RBP22.04■■□□□ 1.12
NOTCH3-201ENST00000263388 KAT6BQ8WYB5 2073 aa22.02■■□□□ 1.12
NOTCH3-201ENST00000263388 SPRYD3Q8NCJ5 442 aa22.01■■□□□ 1.11
NOTCH3-201ENST00000263388 EIF3AQ14152 1382 aaKnown RBP22.01■■□□□ 1.11
NOTCH3-201ENST00000263388 ROCK2O75116 1388 aaKnown RBP22■■□□□ 1.11
NOTCH3-201ENST00000263388 VPS8Q8N3P4 1428 aa22■■□□□ 1.11
NOTCH3-201ENST00000263388 GOLGA6L1Q8N7Z2 621 aa21.99■■□□□ 1.11
NOTCH3-201ENST00000263388 TCERG1O14776 1098 aaKnown RBP21.99■■□□□ 1.11
NOTCH3-201ENST00000263388 RCAN3Q9UKA8 241 aa21.99■■□□□ 1.11
NOTCH3-201ENST00000263388 CLSTN1O94985 981 aa21.99■■□□□ 1.11
NOTCH3-201ENST00000263388 RALBP1Q15311 655 aa21.99■■□□□ 1.11
NOTCH3-201ENST00000263388 CHMP4AQ9BY43 222 aa21.98■■□□□ 1.11
NOTCH3-201ENST00000263388 RWDD1Q9H446 243 aaPredicted RBP21.97■■□□□ 1.11
NOTCH3-201ENST00000263388 GPATCH3Q96I76 525 aa21.96■■□□□ 1.11
NOTCH3-201ENST00000263388 CUX2O14529 1486 aa21.96■■□□□ 1.11
NOTCH3-201ENST00000263388 TPM4P67936 248 aa21.96■■□□□ 1.11
NOTCH3-201ENST00000263388 PMFBP1Q8TBY8 1022 aa21.95■■□□□ 1.1
NOTCH3-201ENST00000263388 CCDC34Q96HJ3 373 aa21.94■■□□□ 1.1
NOTCH3-201ENST00000263388 CSPP1Q1MSJ5 1256 aa21.94■■□□□ 1.1
NOTCH3-201ENST00000263388 ABCC8Q09428 1581 aa21.94■■□□□ 1.1
NOTCH3-201ENST00000263388 PHF14O94880 888 aa21.93■■□□□ 1.1
NOTCH3-201ENST00000263388 SMARCA2P51531 1590 aa21.93■■□□□ 1.1
NOTCH3-201ENST00000263388 CARMIL1Q5VZK9 1371 aa21.93■■□□□ 1.1
NOTCH3-201ENST00000263388 HDGFL2Q7Z4V5 671 aaPredicted RBP21.93■■□□□ 1.1
NOTCH3-201ENST00000263388 FMN1Q68DA7 1419 aa21.9■■□□□ 1.1
NOTCH3-201ENST00000263388 ITPRIPQ8IWB1 547 aa21.9■■□□□ 1.1
NOTCH3-201ENST00000263388 PHLDB1Q86UU1 1377 aa21.89■■□□□ 1.09
NOTCH3-201ENST00000263388 SPAG9O60271 1321 aaKnown RBP21.88■■□□□ 1.09
NOTCH3-201ENST00000263388 HSPA5P11021 654 aaKnown RBP21.87■■□□□ 1.09
NOTCH3-201ENST00000263388 GZF1Q9H116 711 aaPredicted RBP21.87■■□□□ 1.09
NOTCH3-201ENST00000263388 WIZO95785 1651 aa21.87■■□□□ 1.09
NOTCH3-201ENST00000263388 HDAC5Q9UQL6 1122 aa21.86■■□□□ 1.09
NOTCH3-201ENST00000263388 SETQ01105 290 aaPredicted RBP21.86■■□□□ 1.09
NOTCH3-201ENST00000263388 GOLGA6L3A6NEY3 463 aa21.85■■□□□ 1.09
NOTCH3-201ENST00000263388 NCBP3Q53F19 620 aaKnown RBP21.85■■□□□ 1.09
NOTCH3-201ENST00000263388 A0A0U1RQG5 324 aaPredicted RBP21.85■■□□□ 1.09
NOTCH3-201ENST00000263388 PRDM2Q13029 1718 aa21.85■■□□□ 1.09
NOTCH3-201ENST00000263388 SLKQ9H2G2 1235 aaPredicted RBP21.84■■□□□ 1.09
NOTCH3-201ENST00000263388 CARMIL2Q6F5E8 1435 aa21.83■■□□□ 1.09
NOTCH3-201ENST00000263388 ISY1Q9ULR0 285 aaKnown RBP21.83■■□□□ 1.09
NOTCH3-201ENST00000263388 SOX12O15370 315 aa21.83■■□□□ 1.08
NOTCH3-201ENST00000263388 IPO9Q96P70 1041 aaKnown RBP21.82■■□□□ 1.08
NOTCH3-201ENST00000263388 HMMRO75330 724 aa21.82■■□□□ 1.08
NOTCH3-201ENST00000263388 APBB1O00213 710 aa21.82■■□□□ 1.08
NOTCH3-201ENST00000263388 RAB3GAP2Q9H2M9 1393 aa21.81■■□□□ 1.08
NOTCH3-201ENST00000263388 U2AF1L5P0DN76 240 aaPredicted RBP21.81■■□□□ 1.08
NOTCH3-201ENST00000263388 U2AF1Q01081 240 aaKnown RBP eCLIP21.81■■□□□ 1.08
NOTCH3-201ENST00000263388 PKD2Q13563 968 aa21.79■■□□□ 1.08
NOTCH3-201ENST00000263388 SAFB2Q14151 953 aaKnown RBP eCLIP21.78■■□□□ 1.08
NOTCH3-201ENST00000263388 SOGA1O94964 1423 aa21.77■■□□□ 1.08
NOTCH3-201ENST00000263388 TRIM6-TRIM34B2RNG4 842 aa21.77■■□□□ 1.08
NOTCH3-201ENST00000263388 STK31Q9BXU1 1019 aa21.77■■□□□ 1.08
NOTCH3-201ENST00000263388 ANKRD30AQ9BXX3 1397 aa21.77■■□□□ 1.08
NOTCH3-201ENST00000263388 ST18O60284 1047 aa21.77■■□□□ 1.07
NOTCH3-201ENST00000263388 SMC4Q9NTJ3 1288 aa21.76■■□□□ 1.07
NOTCH3-201ENST00000263388 CCDC18Q5T9S5 1454 aa21.76■■□□□ 1.07
NOTCH3-201ENST00000263388 KIF3AQ9Y496 699 aa21.74■■□□□ 1.07
NOTCH3-201ENST00000263388 DDX11L8A8MPP1 907 aa21.74■■□□□ 1.07
NOTCH3-201ENST00000263388 PDE3BQ13370 1112 aa21.74■■□□□ 1.07
NOTCH3-201ENST00000263388 MFAP1P55081 439 aaKnown RBP21.73■■□□□ 1.07
NOTCH3-201ENST00000263388 HSP90B1P14625 803 aaKnown RBP21.73■■□□□ 1.07
NOTCH3-201ENST00000263388 STK26Q9P289 416 aa21.73■■□□□ 1.07
NOTCH3-201ENST00000263388 NUP155O75694 1391 aa21.73■■□□□ 1.07
NOTCH3-201ENST00000263388 GORABQ5T7V8 394 aa21.72■■□□□ 1.07
NOTCH3-201ENST00000263388 MPHOSPH9Q99550 1183 aa21.72■■□□□ 1.07
NOTCH3-201ENST00000263388 LMOD3Q0VAK6 560 aa21.72■■□□□ 1.07
NOTCH3-201ENST00000263388 TERF2IPQ9NYB0 399 aa21.71■■□□□ 1.07
NOTCH3-201ENST00000263388 KIF16BQ96L93 1317 aa21.7■■□□□ 1.06
NOTCH3-201ENST00000263388 KIF15Q9NS87 1388 aa21.7■■□□□ 1.06
NOTCH3-201ENST00000263388 CENPJQ9HC77 1338 aaPredicted RBP21.69■■□□□ 1.06
NOTCH3-201ENST00000263388 PAK3O75914 559 aaPredicted RBP21.69■■□□□ 1.06
NOTCH3-201ENST00000263388 CALRP27797 417 aaKnown RBP21.69■■□□□ 1.06
NOTCH3-201ENST00000263388 TMX4Q9H1E5 349 aaPredicted RBP21.69■■□□□ 1.06
NOTCH3-201ENST00000263388 NLRP13Q86W25 1043 aa21.68■■□□□ 1.06
NOTCH3-201ENST00000263388 CCDC88BA6NC98 1476 aa21.68■■□□□ 1.06
NOTCH3-201ENST00000263388 PRM3Q9NNZ6 103 aa21.68■■□□□ 1.06
NOTCH3-201ENST00000263388 FOXD1Q16676 465 aa21.67■■□□□ 1.06
NOTCH3-201ENST00000263388 TOP2AP11388 1531 aaKnown RBP21.67■■□□□ 1.06
NOTCH3-201ENST00000263388 TAF7LQ5H9L4 462 aa21.66■■□□□ 1.06
NOTCH3-201ENST00000263388 ARID3AQ99856 593 aa21.65■■□□□ 1.06
NOTCH3-201ENST00000263388 CHMP3Q9Y3E7 222 aa21.65■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 8 ms