RNA–Protein interactions for RNA: ENST00000239243.6

MSX2-201, Transcript of msh homeobox 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSX2, Length 2,241 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2-201ENST00000239243 ABCC10Q5T3U5 1492 aa33.82■■■■□ 3
MSX2-201ENST00000239243 RRP7BPQ9NSQ0 103 aa33.81■■■■□ 3
MSX2-201ENST00000239243 ERCC6L2Q5T890 1561 aa33.79■■■■□ 3
MSX2-201ENST00000239243 ABCC2Q92887 1545 aa33.79■■■■□ 3
MSX2-201ENST00000239243 CDC42BPAQ5VT25 1732 aa33.78■■■■□ 3
MSX2-201ENST00000239243 ZNF644Q9H582 1327 aaPredicted RBP33.77■■■■□ 3
MSX2-201ENST00000239243 ADGBQ8N7X0 1667 aa33.7■■■□□ 2.99
MSX2-201ENST00000239243 CROCC2H7BZ55 1655 aa33.7■■■□□ 2.98
MSX2-201ENST00000239243 SIN3AQ96ST3 1273 aa33.69■■■□□ 2.98
MSX2-201ENST00000239243 NEUROD1Q13562 356 aa33.67■■■□□ 2.98
MSX2-201ENST00000239243 KDM6BO15054 1643 aa33.66■■■□□ 2.98
MSX2-201ENST00000239243 UHRF1BP1LA0JNW5 1464 aa33.65■■■□□ 2.98
MSX2-201ENST00000239243 ZNF777Q9ULD5 760 aaPredicted RBP33.64■■■□□ 2.98
MSX2-201ENST00000239243 ADGRL2O95490 1459 aa33.64■■■□□ 2.98
MSX2-201ENST00000239243 PREX2Q70Z35 1606 aa33.6■■■□□ 2.97
MSX2-201ENST00000239243 TRIM52Q96A61 297 aa33.6■■■□□ 2.97
MSX2-201ENST00000239243 SHANK2Q9UPX8 1470 aa33.59■■■□□ 2.97
MSX2-201ENST00000239243 NCOA1Q15788 1441 aa33.58■■■□□ 2.97
MSX2-201ENST00000239243 TONSLQ96HA7 1378 aa33.54■■■□□ 2.96
MSX2-201ENST00000239243 ANKRD30AQ9BXX3 1397 aa33.54■■■□□ 2.96
MSX2-201ENST00000239243 ARHGEF5Q12774 1597 aa33.53■■■□□ 2.96
MSX2-201ENST00000239243 KDM5BQ9UGL1 1544 aa33.53■■■□□ 2.96
MSX2-201ENST00000239243 ZCCHC11Q5TAX3 1644 aaKnown RBP33.52■■■□□ 2.96
MSX2-201ENST00000239243 CDC42BPBQ9Y5S2 1711 aa33.52■■■□□ 2.96
MSX2-201ENST00000239243 MPHOSPH9Q99550 1183 aa33.5■■■□□ 2.95
MSX2-201ENST00000239243 DENND4BO75064 1496 aaPredicted RBP33.5■■■□□ 2.95
MSX2-201ENST00000239243 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP33.49■■■□□ 2.95
MSX2-201ENST00000239243 PPP1R15AO75807 674 aaPredicted RBP33.48■■■□□ 2.95
MSX2-201ENST00000239243 TTC37Q6PGP7 1564 aa33.47■■■□□ 2.95
MSX2-201ENST00000239243 C9orf84Q5VXU9 1444 aa33.46■■■□□ 2.95
MSX2-201ENST00000239243 SAMD9LQ8IVG5 1584 aa33.46■■■□□ 2.95
MSX2-201ENST00000239243 MYO5CQ9NQX4 1742 aa33.45■■■□□ 2.94
MSX2-201ENST00000239243 RSPH4AQ5TD94 716 aa33.44■■■□□ 2.94
MSX2-201ENST00000239243 TSPY4P0CV99 314 aa33.43■■■□□ 2.94
MSX2-201ENST00000239243 TSPY10P0CW01 314 aa33.43■■■□□ 2.94
MSX2-201ENST00000239243 MBD5Q9P267 1494 aa33.42■■■□□ 2.94
MSX2-201ENST00000239243 ARHGAP5Q13017 1502 aa33.41■■■□□ 2.94
MSX2-201ENST00000239243 CCDC141Q6ZP82 1450 aa33.41■■■□□ 2.94
MSX2-201ENST00000239243 PLEKHH2Q8IVE3 1493 aa33.38■■■□□ 2.93
MSX2-201ENST00000239243 ANKRD50Q9ULJ7 1429 aa33.37■■■□□ 2.93
MSX2-201ENST00000239243 HNRNPMP52272 730 aaKnown RBP eCLIP33.34■■■□□ 2.93
MSX2-201ENST00000239243 OSCARQ8IYS5 282 aa33.32■■■□□ 2.92
MSX2-201ENST00000239243 SLC4A1APQ9BWU0 796 aaKnown RBP33.32■■■□□ 2.92
MSX2-201ENST00000239243 KIAA1107Q9UPP5 1409 aa33.31■■■□□ 2.92
MSX2-201ENST00000239243 PZPP20742 1482 aa33.3■■■□□ 2.92
MSX2-201ENST00000239243 SYCP2Q9BX26 1530 aa33.3■■■□□ 2.92
MSX2-201ENST00000239243 MAST1Q9Y2H9 1570 aa33.29■■■□□ 2.92
MSX2-201ENST00000239243 PLCH2O75038 1416 aa33.29■■■□□ 2.92
MSX2-201ENST00000239243 ANKRD30BQ9BXX2 1392 aa33.29■■■□□ 2.92
MSX2-201ENST00000239243 KCNH8Q96L42 1107 aa33.29■■■□□ 2.92
MSX2-201ENST00000239243 KIF15Q9NS87 1388 aa33.26■■■□□ 2.92
MSX2-201ENST00000239243 RPRD2Q5VT52 1461 aaKnown RBP33.23■■■□□ 2.91
MSX2-201ENST00000239243 MIER1Q8N108 512 aa33.22■■■□□ 2.91
MSX2-201ENST00000239243 ARAP3Q8WWN8 1544 aa33.22■■■□□ 2.91
MSX2-201ENST00000239243 WDR7Q9Y4E6 1490 aa33.21■■■□□ 2.91
MSX2-201ENST00000239243 KDM5DQ9BY66 1539 aa33.21■■■□□ 2.91
MSX2-201ENST00000239243 EFCAB2Q5VUJ9 269 aa33.19■■■□□ 2.9
MSX2-201ENST00000239243 FOXD1Q16676 465 aa33.18■■■□□ 2.9
MSX2-201ENST00000239243 PLXNC1O60486 1568 aa33.15■■■□□ 2.9
MSX2-201ENST00000239243 ABCC1P33527 1531 aa33.13■■■□□ 2.89
MSX2-201ENST00000239243 NUP155O75694 1391 aa33.12■■■□□ 2.89
MSX2-201ENST00000239243 ABCA9Q8IUA7 1624 aa33.08■■■□□ 2.89
MSX2-201ENST00000239243 ARHGEF12Q9NZN5 1544 aa33.08■■■□□ 2.89
MSX2-201ENST00000239243 PKD2Q13563 968 aa33.07■■■□□ 2.88
MSX2-201ENST00000239243 TEX14Q8IWB6 1497 aa33.06■■■□□ 2.88
MSX2-201ENST00000239243 L3MBTL2Q969R5 705 aa33.06■■■□□ 2.88
MSX2-201ENST00000239243 CENPBP07199 599 aaPredicted RBP33.04■■■□□ 2.88
MSX2-201ENST00000239243 DUOX2Q9NRD8 1548 aa33.02■■■□□ 2.88
MSX2-201ENST00000239243 ASXL2Q76L83 1435 aa33.02■■■□□ 2.88
MSX2-201ENST00000239243 UNC13BO14795 1591 aa33.01■■■□□ 2.87
MSX2-201ENST00000239243 NPM1P06748 294 aaKnown RBP eCLIP32.99■■■□□ 2.87
MSX2-201ENST00000239243 ERBINQ96RT1 1412 aa32.97■■■□□ 2.87
MSX2-201ENST00000239243 FAM135AQ9P2D6 1515 aa32.96■■■□□ 2.87
MSX2-201ENST00000239243 FANCAO15360 1455 aa32.94■■■□□ 2.86
MSX2-201ENST00000239243 TRAPPC8Q9Y2L5 1435 aa32.94■■■□□ 2.86
MSX2-201ENST00000239243 RTEL1-TNFRSF6BF6WH68 1400 aa32.94■■■□□ 2.86
MSX2-201ENST00000239243 IQGAP3Q86VI3 1631 aa32.88■■■□□ 2.85
MSX2-201ENST00000239243 HIRIP3Q9BW71 556 aaPredicted RBP32.87■■■□□ 2.85
MSX2-201ENST00000239243 SPAG9O60271 1321 aaKnown RBP32.87■■■□□ 2.85
MSX2-201ENST00000239243 MAGI2Q86UL8 1455 aa32.86■■■□□ 2.85
MSX2-201ENST00000239243 DDX10Q13206 875 aaKnown RBP32.86■■■□□ 2.85
MSX2-201ENST00000239243 EIF4G2P78344 907 aaKnown RBP eCLIP32.85■■■□□ 2.85
MSX2-201ENST00000239243 ZFYVE16Q7Z3T8 1539 aa32.85■■■□□ 2.85
MSX2-201ENST00000239243 ADGRL1O94910 1474 aa32.82■■■□□ 2.84
MSX2-201ENST00000239243 HSPA5P11021 654 aaKnown RBP32.79■■■□□ 2.84
MSX2-201ENST00000239243 NBPF8Q3BBV2 869 aa32.79■■■□□ 2.84
MSX2-201ENST00000239243 INO80Q9ULG1 1556 aaPredicted RBP32.79■■■□□ 2.84
MSX2-201ENST00000239243 CFAP74Q9C0B2 1584 aa32.77■■■□□ 2.84
MSX2-201ENST00000239243 AFAP1Q8N556 730 aa32.77■■■□□ 2.84
MSX2-201ENST00000239243 YTHDC1Q96MU7 727 aaKnown RBP32.77■■■□□ 2.84
MSX2-201ENST00000239243 ATP7AQ04656 1500 aa32.77■■■□□ 2.84
MSX2-201ENST00000239243 SCAPERQ9BY12 1400 aa32.76■■■□□ 2.83
MSX2-201ENST00000239243 GRWD1Q9BQ67 446 aaKnown RBP eCLIP32.73■■■□□ 2.83
MSX2-201ENST00000239243 UHRF1BP1Q6BDS2 1440 aa32.72■■■□□ 2.83
MSX2-201ENST00000239243 CCDC144AA2RUR9 1427 aa32.7■■■□□ 2.83
MSX2-201ENST00000239243 CD109Q6YHK3 1445 aa32.68■■■□□ 2.82
MSX2-201ENST00000239243 ATP10AO60312 1499 aa32.67■■■□□ 2.82
MSX2-201ENST00000239243 DEPDC5O75140 1603 aa32.66■■■□□ 2.82
MSX2-201ENST00000239243 ZNF518AQ6AHZ1 1483 aa32.65■■■□□ 2.82
MSX2-201ENST00000239243 EIF2AK4Q9P2K8 1649 aaKnown RBP32.64■■■□□ 2.82
Retrieved 100 of 20,778 RNA–protein pairs in 7.9 ms