RNA–Protein interactions for RNA: ENST00000233146.6

MSH2-201, Transcript of mutS homolog 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH2, Length 3,307 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH2-201ENST00000233146 AEBP2Q6ZN18 517 aaPredicted RBP16.95■□□□□ 0.3
MSH2-201ENST00000233146 SKAP1Q86WV1 359 aa16.95■□□□□ 0.3
MSH2-201ENST00000233146 GOLGA6L3A6NEY3 463 aa16.94■□□□□ 0.3
MSH2-201ENST00000233146 PANK2Q9BZ23 570 aa16.94■□□□□ 0.3
MSH2-201ENST00000233146 PHLDB1Q86UU1 1377 aa16.94■□□□□ 0.3
MSH2-201ENST00000233146 ESPNB1AK53 854 aa16.93■□□□□ 0.3
MSH2-201ENST00000233146 PRXQ9BXM0 1461 aa16.93■□□□□ 0.3
MSH2-201ENST00000233146 TIAM1Q13009 1591 aa16.92■□□□□ 0.3
MSH2-201ENST00000233146 ABCA5Q8WWZ7 1642 aa16.92■□□□□ 0.3
MSH2-201ENST00000233146 FAM50AQ14320 339 aaKnown RBP16.92■□□□□ 0.3
MSH2-201ENST00000233146 ARID4BQ4LE39 1312 aaPredicted RBP16.91■□□□□ 0.3
MSH2-201ENST00000233146 C8orf34Q49A92 452 aa16.91■□□□□ 0.3
MSH2-201ENST00000233146 FAM161AQ3B820 660 aa16.91■□□□□ 0.3
MSH2-201ENST00000233146 RCAN3Q9UKA8 241 aa16.9■□□□□ 0.3
MSH2-201ENST00000233146 ERBB4Q15303 1308 aa16.9■□□□□ 0.3
MSH2-201ENST00000233146 SMAP1Q8IYB5 467 aaPredicted RBP16.89■□□□□ 0.29
MSH2-201ENST00000233146 BBXQ8WY36 941 aaPredicted RBP16.89■□□□□ 0.29
MSH2-201ENST00000233146 ARHGAP35Q9NRY4 1499 aa16.88■□□□□ 0.29
MSH2-201ENST00000233146 UACAQ9BZF9 1416 aa16.88■□□□□ 0.29
MSH2-201ENST00000233146 GTF2E1P29083 439 aaPredicted RBP16.87■□□□□ 0.29
MSH2-201ENST00000233146 LRRC9Q6ZRR7 1453 aa16.86■□□□□ 0.29
MSH2-201ENST00000233146 MAP7D2Q96T17 732 aa16.86■□□□□ 0.29
MSH2-201ENST00000233146 TAF7LQ5H9L4 462 aa16.85■□□□□ 0.29
MSH2-201ENST00000233146 PNISRQ8TF01 805 aaKnown RBP16.85■□□□□ 0.29
MSH2-201ENST00000233146 POLR1AO95602 1720 aaPredicted RBP16.85■□□□□ 0.29
MSH2-201ENST00000233146 NAP1L2Q9ULW6 460 aaPredicted RBP16.84■□□□□ 0.29
MSH2-201ENST00000233146 ARXQ96QS3 562 aa16.84■□□□□ 0.29
MSH2-201ENST00000233146 MRE11P49959 708 aa16.83■□□□□ 0.29
MSH2-201ENST00000233146 KIAA1211Q6ZU35 1233 aa16.83■□□□□ 0.29
MSH2-201ENST00000233146 KDM2BQ8NHM5 1336 aa16.83■□□□□ 0.28
MSH2-201ENST00000233146 KTN1Q86UP2 1357 aaKnown RBP16.83■□□□□ 0.28
MSH2-201ENST00000233146 CCDC18Q5T9S5 1454 aa16.83■□□□□ 0.28
MSH2-201ENST00000233146 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.82■□□□□ 0.28
MSH2-201ENST00000233146 SMARCA4P51532 1647 aa16.82■□□□□ 0.28
MSH2-201ENST00000233146 SENP3-EIF4A1A0A087X0R7 540 aa16.82■□□□□ 0.28
MSH2-201ENST00000233146 DHX29Q7Z478 1369 aaKnown RBP16.82■□□□□ 0.28
MSH2-201ENST00000233146 STAC3Q96MF2 364 aa16.82■□□□□ 0.28
MSH2-201ENST00000233146 KIF7Q2M1P5 1343 aa16.81■□□□□ 0.28
MSH2-201ENST00000233146 RIPK4P57078 832 aa16.81■□□□□ 0.28
MSH2-201ENST00000233146 MYH16Q9H6N6 1097 aa16.81■□□□□ 0.28
MSH2-201ENST00000233146 MYOM3Q5VTT5 1437 aa16.8■□□□□ 0.28
MSH2-201ENST00000233146 TERF1P54274 439 aa16.8■□□□□ 0.28
MSH2-201ENST00000233146 ANTXR1Q9H6X2 564 aa16.8■□□□□ 0.28
MSH2-201ENST00000233146 UTP14CQ5TAP6 766 aaKnown RBP16.78■□□□□ 0.28
MSH2-201ENST00000233146 LRPPRCP42704 1394 aaKnown RBP16.78■□□□□ 0.28
MSH2-201ENST00000233146 CRBNQ96SW2 442 aa16.77■□□□□ 0.28
MSH2-201ENST00000233146 ZHX1Q9UKY1 873 aaPredicted RBP16.77■□□□□ 0.28
MSH2-201ENST00000233146 CANXP27824 592 aaKnown RBP16.77■□□□□ 0.27
MSH2-201ENST00000233146 CENPQQ7L2Z9 268 aaPredicted RBP16.76■□□□□ 0.27
MSH2-201ENST00000233146 USP19O94966 1318 aa16.75■□□□□ 0.27
MSH2-201ENST00000233146 GRPEL1Q9HAV7 217 aa16.75■□□□□ 0.27
MSH2-201ENST00000233146 NCLP19338 710 aaKnown RBP16.75■□□□□ 0.27
MSH2-201ENST00000233146 CHMP4BQ9H444 224 aaKnown RBP16.75■□□□□ 0.27
MSH2-201ENST00000233146 BECN1Q14457 450 aa16.74■□□□□ 0.27
MSH2-201ENST00000233146 SLKQ9H2G2 1235 aaPredicted RBP16.74■□□□□ 0.27
MSH2-201ENST00000233146 HFM1A2PYH4 1435 aa16.74■□□□□ 0.27
MSH2-201ENST00000233146 IPO4Q8TEX9 1081 aaKnown RBP16.74■□□□□ 0.27
MSH2-201ENST00000233146 SPATA31E1Q6ZUB1 1445 aa16.74■□□□□ 0.27
MSH2-201ENST00000233146 OFD1O75665 1012 aa16.73■□□□□ 0.27
MSH2-201ENST00000233146 DMTNQ08495 405 aa16.73■□□□□ 0.27
MSH2-201ENST00000233146 PDE3BQ13370 1112 aa16.73■□□□□ 0.27
MSH2-201ENST00000233146 AQRO60306 1485 aaKnown RBP eCLIP16.73■□□□□ 0.276e-6■■■■□ 25.1
MSH2-201ENST00000233146 TRIM44Q96DX7 344 aaPredicted RBP16.73■□□□□ 0.27
MSH2-201ENST00000233146 GZF1Q9H116 711 aaPredicted RBP16.73■□□□□ 0.27
MSH2-201ENST00000233146 ISY1Q9ULR0 285 aaKnown RBP16.73■□□□□ 0.27
MSH2-201ENST00000233146 PTPN23Q9H3S7 1636 aa16.73■□□□□ 0.27
MSH2-201ENST00000233146 PLIN1O60240 522 aa16.72■□□□□ 0.27
MSH2-201ENST00000233146 VIRMAQ69YN4 1812 aaKnown RBP16.72■□□□□ 0.27
MSH2-201ENST00000233146 MCM4P33991 863 aa16.72■□□□□ 0.27
MSH2-201ENST00000233146 TMC1Q8TDI8 760 aa16.71■□□□□ 0.27
MSH2-201ENST00000233146 FAM13BQ9NYF5 915 aa16.7■□□□□ 0.26
MSH2-201ENST00000233146 MTERF4Q7Z6M4 381 aaKnown RBP16.7■□□□□ 0.26
MSH2-201ENST00000233146 CNGB1Q14028 1251 aaPredicted RBP16.69■□□□□ 0.26
MSH2-201ENST00000233146 CFAP43Q8NDM7 1665 aa16.69■□□□□ 0.26
MSH2-201ENST00000233146 TOP2BQ02880 1626 aa16.69■□□□□ 0.26
MSH2-201ENST00000233146 TRAK2O60296 914 aa16.67■□□□□ 0.26
MSH2-201ENST00000233146 PDZRN4Q6ZMN7 1036 aaPredicted RBP16.67■□□□□ 0.26
MSH2-201ENST00000233146 KLHL34Q8N239 644 aa16.66■□□□□ 0.26
MSH2-201ENST00000233146 UNC13AQ9UPW8 1703 aa16.65■□□□□ 0.26
MSH2-201ENST00000233146 ZSCAN20P17040 1043 aaPredicted RBP16.65■□□□□ 0.26
MSH2-201ENST00000233146 PRDM10Q9NQV6 1147 aa16.65■□□□□ 0.26
MSH2-201ENST00000233146 TMEM51Q9NW97 253 aa16.65■□□□□ 0.26
MSH2-201ENST00000233146 NAIPQ13075 1403 aa16.64■□□□□ 0.25
MSH2-201ENST00000233146 PPP4R3BQ5MIZ7 849 aa16.64■□□□□ 0.25
MSH2-201ENST00000233146 L3MBTL2Q969R5 705 aa16.64■□□□□ 0.25
MSH2-201ENST00000233146 RSPH4AQ5TD94 716 aa16.63■□□□□ 0.25
MSH2-201ENST00000233146 PTPRKQ15262 1439 aa16.63■□□□□ 0.25
MSH2-201ENST00000233146 BRD4O60885 1362 aaPredicted RBP16.62■□□□□ 0.25
MSH2-201ENST00000233146 FMN1Q68DA7 1419 aa16.62■□□□□ 0.25
MSH2-201ENST00000233146 ZSCAN30Q86W11 494 aa16.62■□□□□ 0.25
MSH2-201ENST00000233146 DENND4BO75064 1496 aaPredicted RBP16.62■□□□□ 0.25
MSH2-201ENST00000233146 C20orf194Q5TEA3 1177 aa16.62■□□□□ 0.25
MSH2-201ENST00000233146 CDCA7LQ96GN5 454 aa16.61■□□□□ 0.25
MSH2-201ENST00000233146 NLRP1Q9C000 1473 aa16.61■□□□□ 0.25
MSH2-201ENST00000233146 NBPF8Q3BBV2 869 aa16.6■□□□□ 0.25
MSH2-201ENST00000233146 ZNF326Q5BKZ1 582 aaKnown RBP16.6■□□□□ 0.25
MSH2-201ENST00000233146 KIF20AO95235 890 aa16.6■□□□□ 0.25
MSH2-201ENST00000233146 BIVM-ERCC5R4GMW8 1640 aa16.59■□□□□ 0.25
MSH2-201ENST00000233146 PAXIP1Q6ZW49 1069 aaPredicted RBP16.59■□□□□ 0.25
MSH2-201ENST00000233146 SEC24BO95487 1268 aa16.58■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 51.2 ms