RNA–Protein interactions for RNA: ENST00000219281.7

USB1-201, Transcript of U6 snRNA biogenesis phosphodiesterase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USB1, Length 2,282 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USB1-201ENST00000219281 MIA2Q96PC5 1412 aa24.21■■□□□ 1.47
USB1-201ENST00000219281 CARMIL2Q6F5E8 1435 aa24.2■■□□□ 1.47
USB1-201ENST00000219281 CDK11AQ9UQ88 783 aaPredicted RBP24.17■■□□□ 1.46
USB1-201ENST00000219281 PRG4Q92954 1404 aaPredicted RBP24.14■■□□□ 1.46
USB1-201ENST00000219281 DENND4BO75064 1496 aaPredicted RBP24.13■■□□□ 1.45
USB1-201ENST00000219281 HSPA5P11021 654 aaKnown RBP24.12■■□□□ 1.45
USB1-201ENST00000219281 ZNF644Q9H582 1327 aaPredicted RBP24.1■■□□□ 1.45
USB1-201ENST00000219281 TROQ12816 1431 aaPredicted RBP24.1■■□□□ 1.45
USB1-201ENST00000219281 GCC2Q8IWJ2 1684 aa24.1■■□□□ 1.45
USB1-201ENST00000219281 KDM6BO15054 1643 aa24.09■■□□□ 1.45
USB1-201ENST00000219281 WASHC2AQ641Q2 1341 aa24.08■■□□□ 1.45
USB1-201ENST00000219281 MPHOSPH9Q99550 1183 aa24.07■■□□□ 1.44
USB1-201ENST00000219281 AKNAQ7Z591 1439 aa24.07■■□□□ 1.44
USB1-201ENST00000219281 ABCA8O94911 1581 aa24.05■■□□□ 1.44
USB1-201ENST00000219281 HNRNPUQ00839 825 aaKnown RBP eCLIP24.04■■□□□ 1.44
USB1-201ENST00000219281 EIF4G2P78344 907 aaKnown RBP eCLIP24.04■■□□□ 1.44
USB1-201ENST00000219281 FOXD1Q16676 465 aa24.02■■□□□ 1.44
USB1-201ENST00000219281 ABCC5O15440 1437 aa24.02■■□□□ 1.44
USB1-201ENST00000219281 DAPK1P53355 1430 aa24.01■■□□□ 1.43
USB1-201ENST00000219281 ATP10BO94823 1461 aa24.01■■□□□ 1.43
USB1-201ENST00000219281 L3MBTL2Q969R5 705 aa24.01■■□□□ 1.43
USB1-201ENST00000219281 ANP32EQ9BTT0 268 aa24■■□□□ 1.43
USB1-201ENST00000219281 GPATCH8Q9UKJ3 1502 aaKnown RBP24■■□□□ 1.43
USB1-201ENST00000219281 CHD1O14646 1710 aa23.98■■□□□ 1.43
USB1-201ENST00000219281 KIF14Q15058 1648 aa23.98■■□□□ 1.43
USB1-201ENST00000219281 CFDP1Q9UEE9 299 aaPredicted RBP23.98■■□□□ 1.43
USB1-201ENST00000219281 PTPRGP23470 1445 aa23.97■■□□□ 1.43
USB1-201ENST00000219281 PLEKHD1A6NEE1 506 aa23.97■■□□□ 1.43
USB1-201ENST00000219281 DNMT1P26358 1616 aaKnown RBP23.95■■□□□ 1.42
USB1-201ENST00000219281 ROCK1Q13464 1354 aa23.95■■□□□ 1.42
USB1-201ENST00000219281 RBM19Q9Y4C8 960 aaKnown RBP23.95■■□□□ 1.42
USB1-201ENST00000219281 ADCY10Q96PN6 1610 aa23.94■■□□□ 1.42
USB1-201ENST00000219281 CNTLNQ9NXG0 1405 aa23.93■■□□□ 1.42
USB1-201ENST00000219281 C11orf95C9JLR9 678 aaPredicted RBP23.93■■□□□ 1.42
USB1-201ENST00000219281 CAMSAP2Q08AD1 1489 aa23.91■■□□□ 1.42
USB1-201ENST00000219281 ZNF777Q9ULD5 760 aaPredicted RBP23.9■■□□□ 1.42
USB1-201ENST00000219281 CCDC184Q52MB2 194 aa23.9■■□□□ 1.42
USB1-201ENST00000219281 ANKRD30BQ9BXX2 1392 aa23.89■■□□□ 1.42
USB1-201ENST00000219281 IRX6P78412 446 aaPredicted RBP23.89■■□□□ 1.41
USB1-201ENST00000219281 NBPF8Q3BBV2 869 aa23.88■■□□□ 1.41
USB1-201ENST00000219281 CCDC7Q96M83 1385 aa23.88■■□□□ 1.41
USB1-201ENST00000219281 ABCC10Q5T3U5 1492 aa23.88■■□□□ 1.41
USB1-201ENST00000219281 NCOA1Q15788 1441 aa23.87■■□□□ 1.41
USB1-201ENST00000219281 SHROOM2Q13796 1616 aa23.86■■□□□ 1.41
USB1-201ENST00000219281 ITSN2Q9NZM3 1697 aa23.86■■□□□ 1.41
USB1-201ENST00000219281 RPRD2Q5VT52 1461 aaKnown RBP23.86■■□□□ 1.41
USB1-201ENST00000219281 SLC4A1APQ9BWU0 796 aaKnown RBP23.84■■□□□ 1.41
USB1-201ENST00000219281 PRKRIP1Q9H875 184 aaPredicted RBP23.84■■□□□ 1.41
USB1-201ENST00000219281 ERCC6L2Q5T890 1561 aa23.83■■□□□ 1.4
USB1-201ENST00000219281 TEX14Q8IWB6 1497 aa23.82■■□□□ 1.4
USB1-201ENST00000219281 FAM9BQ8IZU0 186 aa23.8■■□□□ 1.4
USB1-201ENST00000219281 CDC42BPAQ5VT25 1732 aa23.79■■□□□ 1.4
USB1-201ENST00000219281 MRS2Q9HD23 443 aa23.78■■□□□ 1.4
USB1-201ENST00000219281 KIF7Q2M1P5 1343 aa23.77■■□□□ 1.4
USB1-201ENST00000219281 SPATA31E1Q6ZUB1 1445 aa23.75■■□□□ 1.39
USB1-201ENST00000219281 ADGRL2O95490 1459 aa23.75■■□□□ 1.39
USB1-201ENST00000219281 CLASP1Q7Z460 1538 aa23.7■■□□□ 1.39
USB1-201ENST00000219281 ANKRD30AQ9BXX3 1397 aa23.7■■□□□ 1.38
USB1-201ENST00000219281 CROCC2H7BZ55 1655 aa23.7■■□□□ 1.38
USB1-201ENST00000219281 PZPP20742 1482 aa23.7■■□□□ 1.38
USB1-201ENST00000219281 HNRNPMP52272 730 aaKnown RBP eCLIP23.7■■□□□ 1.38
USB1-201ENST00000219281 ERICH6BQ5W0A0 696 aa23.7■■□□□ 1.38
USB1-201ENST00000219281 ADGBQ8N7X0 1667 aa23.68■■□□□ 1.38
USB1-201ENST00000219281 ZBED9Q6R2W3 1325 aa23.68■■□□□ 1.38
USB1-201ENST00000219281 ABCC2Q92887 1545 aa23.67■■□□□ 1.38
USB1-201ENST00000219281 PPP4R2Q9NY27 417 aa23.67■■□□□ 1.38
USB1-201ENST00000219281 MBD5Q9P267 1494 aa23.66■■□□□ 1.38
USB1-201ENST00000219281 C9orf84Q5VXU9 1444 aa23.65■■□□□ 1.38
USB1-201ENST00000219281 ANKRD50Q9ULJ7 1429 aa23.64■■□□□ 1.38
USB1-201ENST00000219281 TSPY4P0CV99 314 aa23.64■■□□□ 1.37
USB1-201ENST00000219281 TSPY10P0CW01 314 aa23.64■■□□□ 1.37
USB1-201ENST00000219281 SHANK2Q9UPX8 1470 aa23.64■■□□□ 1.37
USB1-201ENST00000219281 CDC42BPBQ9Y5S2 1711 aa23.62■■□□□ 1.37
USB1-201ENST00000219281 MSH5O43196 834 aa23.62■■□□□ 1.37
USB1-201ENST00000219281 ZNF326Q5BKZ1 582 aaKnown RBP23.62■■□□□ 1.37
USB1-201ENST00000219281 POLR1AO95602 1720 aaPredicted RBP23.62■■□□□ 1.37
USB1-201ENST00000219281 KIAA1107Q9UPP5 1409 aa23.61■■□□□ 1.37
USB1-201ENST00000219281 PKD2Q13563 968 aa23.6■■□□□ 1.37
USB1-201ENST00000219281 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP23.6■■□□□ 1.37
USB1-201ENST00000219281 SAMD9LQ8IVG5 1584 aa23.6■■□□□ 1.37
USB1-201ENST00000219281 CNGB1Q14028 1251 aaPredicted RBP23.59■■□□□ 1.37
USB1-201ENST00000219281 POLR3GLQ9BT43 218 aa23.59■■□□□ 1.37
USB1-201ENST00000219281 PREX2Q70Z35 1606 aa23.59■■□□□ 1.37
USB1-201ENST00000219281 ARHGEF5Q12774 1597 aa23.58■■□□□ 1.37
USB1-201ENST00000219281 TTC37Q6PGP7 1564 aa23.57■■□□□ 1.36
USB1-201ENST00000219281 USP47Q96K76 1375 aa23.57■■□□□ 1.36
USB1-201ENST00000219281 FANCIQ9NVI1 1328 aa23.57■■□□□ 1.36
USB1-201ENST00000219281 DHX29Q7Z478 1369 aaKnown RBP23.56■■□□□ 1.36
USB1-201ENST00000219281 UHRF1BP1LA0JNW5 1464 aa23.54■■□□□ 1.36
USB1-201ENST00000219281 RSPH4AQ5TD94 716 aa23.54■■□□□ 1.36
USB1-201ENST00000219281 B4GALNT3Q6L9W6 998 aa23.54■■□□□ 1.36
USB1-201ENST00000219281 KIF15Q9NS87 1388 aa23.54■■□□□ 1.36
USB1-201ENST00000219281 CCDC141Q6ZP82 1450 aa23.53■■□□□ 1.36
USB1-201ENST00000219281 BCORL1Q5H9F3 1711 aa23.52■■□□□ 1.36
USB1-201ENST00000219281 NUP155O75694 1391 aa23.52■■□□□ 1.35
USB1-201ENST00000219281 ARHGAP5Q13017 1502 aa23.5■■□□□ 1.35
USB1-201ENST00000219281 ZCCHC11Q5TAX3 1644 aaKnown RBP23.49■■□□□ 1.35
USB1-201ENST00000219281 SYCP2Q9BX26 1530 aa23.48■■□□□ 1.35
USB1-201ENST00000219281 KDM5CP41229 1560 aa23.46■■□□□ 1.35
USB1-201ENST00000219281 ARID4BQ4LE39 1312 aaPredicted RBP23.46■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 10.2 ms