RNA–Protein interactions for RNA: ENST00000023939.8

RTFDC1-201, Transcript of Protein RTF2 homolog, humanhuman

TSL 2 BASIC

Gene RTFDC1, Length 1,745 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTFDC1-201ENST00000023939 CAMSAP2Q08AD1 1489 aa20.98■□□□□ 0.95
RTFDC1-201ENST00000023939 ACIN1Q9UKV3 1341 aaKnown RBP20.98■□□□□ 0.95
RTFDC1-201ENST00000023939 CDC42BPAQ5VT25 1732 aa20.96■□□□□ 0.95
RTFDC1-201ENST00000023939 ZNF644Q9H582 1327 aaPredicted RBP20.95■□□□□ 0.94
RTFDC1-201ENST00000023939 KDM5BQ9UGL1 1544 aa20.92■□□□□ 0.94
RTFDC1-201ENST00000023939 ZNF316A6NFI3 1004 aaPredicted RBP20.92■□□□□ 0.94
RTFDC1-201ENST00000023939 TIMELESSQ9UNS1 1208 aa20.91■□□□□ 0.94
RTFDC1-201ENST00000023939 RRP7BPQ9NSQ0 103 aa20.9■□□□□ 0.94
RTFDC1-201ENST00000023939 CHIC2Q9UKJ5 165 aa20.9■□□□□ 0.94
RTFDC1-201ENST00000023939 ADGRL2O95490 1459 aa20.89■□□□□ 0.94
RTFDC1-201ENST00000023939 CROCC2H7BZ55 1655 aa20.88■□□□□ 0.93
RTFDC1-201ENST00000023939 SHANK2Q9UPX8 1470 aa20.87■□□□□ 0.93
RTFDC1-201ENST00000023939 PREX2Q70Z35 1606 aa20.87■□□□□ 0.93
RTFDC1-201ENST00000023939 ADGBQ8N7X0 1667 aa20.86■□□□□ 0.93
RTFDC1-201ENST00000023939 ZCCHC11Q5TAX3 1644 aaKnown RBP20.85■□□□□ 0.93
RTFDC1-201ENST00000023939 KDM6BO15054 1643 aa20.84■□□□□ 0.93
RTFDC1-201ENST00000023939 ARHGEF5Q12774 1597 aa20.84■□□□□ 0.93
RTFDC1-201ENST00000023939 NCOA1Q15788 1441 aa20.84■□□□□ 0.93
RTFDC1-201ENST00000023939 OSCARQ8IYS5 282 aa20.84■□□□□ 0.93
RTFDC1-201ENST00000023939 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP20.83■□□□□ 0.92
RTFDC1-201ENST00000023939 ZNF777Q9ULD5 760 aaPredicted RBP20.81■□□□□ 0.92
RTFDC1-201ENST00000023939 CDC42BPBQ9Y5S2 1711 aa20.81■□□□□ 0.92
RTFDC1-201ENST00000023939 TTC37Q6PGP7 1564 aa20.8■□□□□ 0.92
RTFDC1-201ENST00000023939 ANKRD30AQ9BXX3 1397 aa20.79■□□□□ 0.92
RTFDC1-201ENST00000023939 MBD5Q9P267 1494 aa20.79■□□□□ 0.92
RTFDC1-201ENST00000023939 RSPH4AQ5TD94 716 aa20.78■□□□□ 0.92
RTFDC1-201ENST00000023939 SIN3AQ96ST3 1273 aa20.78■□□□□ 0.92
RTFDC1-201ENST00000023939 SAMD9LQ8IVG5 1584 aa20.78■□□□□ 0.92
RTFDC1-201ENST00000023939 DENND4BO75064 1496 aaPredicted RBP20.77■□□□□ 0.92
RTFDC1-201ENST00000023939 DIEXFQ68CQ4 756 aaKnown RBP20.75■□□□□ 0.91
RTFDC1-201ENST00000023939 C9orf84Q5VXU9 1444 aa20.75■□□□□ 0.91
RTFDC1-201ENST00000023939 PLEKHH2Q8IVE3 1493 aa20.75■□□□□ 0.91
RTFDC1-201ENST00000023939 MYO5CQ9NQX4 1742 aa20.75■□□□□ 0.91
RTFDC1-201ENST00000023939 KIAA1107Q9UPP5 1409 aa20.74■□□□□ 0.91
RTFDC1-201ENST00000023939 CCDC141Q6ZP82 1450 aa20.73■□□□□ 0.91
RTFDC1-201ENST00000023939 PLCH2O75038 1416 aa20.73■□□□□ 0.91
RTFDC1-201ENST00000023939 TRIM52Q96A61 297 aa20.73■□□□□ 0.91
RTFDC1-201ENST00000023939 MPHOSPH9Q99550 1183 aa20.73■□□□□ 0.91
RTFDC1-201ENST00000023939 ARHGAP5Q13017 1502 aa20.72■□□□□ 0.91
RTFDC1-201ENST00000023939 NEUROD1Q13562 356 aa20.72■□□□□ 0.91
RTFDC1-201ENST00000023939 ARAP3Q8WWN8 1544 aa20.71■□□□□ 0.91
RTFDC1-201ENST00000023939 TSPY4P0CV99 314 aa20.7■□□□□ 0.9
RTFDC1-201ENST00000023939 TSPY10P0CW01 314 aa20.7■□□□□ 0.9
RTFDC1-201ENST00000023939 MAST1Q9Y2H9 1570 aa20.7■□□□□ 0.9
RTFDC1-201ENST00000023939 WDR7Q9Y4E6 1490 aa20.69■□□□□ 0.9
RTFDC1-201ENST00000023939 ANKRD50Q9ULJ7 1429 aa20.69■□□□□ 0.9
RTFDC1-201ENST00000023939 PPP1R15AO75807 674 aaPredicted RBP20.67■□□□□ 0.9
RTFDC1-201ENST00000023939 HNRNPMP52272 730 aaKnown RBP eCLIP20.67■□□□□ 0.9
RTFDC1-201ENST00000023939 KCNH8Q96L42 1107 aa20.66■□□□□ 0.9
RTFDC1-201ENST00000023939 SYCP2Q9BX26 1530 aa20.66■□□□□ 0.9
RTFDC1-201ENST00000023939 TONSLQ96HA7 1378 aa20.66■□□□□ 0.9
RTFDC1-201ENST00000023939 PZPP20742 1482 aa20.66■□□□□ 0.9
RTFDC1-201ENST00000023939 EFCAB2Q5VUJ9 269 aa20.64■□□□□ 0.89
RTFDC1-201ENST00000023939 ANKRD30BQ9BXX2 1392 aa20.63■□□□□ 0.89
RTFDC1-201ENST00000023939 KIF15Q9NS87 1388 aa20.62■□□□□ 0.89
RTFDC1-201ENST00000023939 KDM5DQ9BY66 1539 aa20.62■□□□□ 0.89
RTFDC1-201ENST00000023939 ABCA9Q8IUA7 1624 aa20.61■□□□□ 0.89
RTFDC1-201ENST00000023939 ABCC1P33527 1531 aa20.6■□□□□ 0.89
RTFDC1-201ENST00000023939 PLXNC1O60486 1568 aa20.6■□□□□ 0.89
RTFDC1-201ENST00000023939 SLC4A1APQ9BWU0 796 aaKnown RBP20.59■□□□□ 0.89
RTFDC1-201ENST00000023939 ARHGEF12Q9NZN5 1544 aa20.59■□□□□ 0.89
RTFDC1-201ENST00000023939 ASXL2Q76L83 1435 aa20.58■□□□□ 0.89
RTFDC1-201ENST00000023939 RPRD2Q5VT52 1461 aaKnown RBP20.56■□□□□ 0.88
RTFDC1-201ENST00000023939 NPM1P06748 294 aaKnown RBP eCLIP20.52■□□□□ 0.88
RTFDC1-201ENST00000023939 RTEL1-TNFRSF6BF6WH68 1400 aa20.51■□□□□ 0.87
RTFDC1-201ENST00000023939 NUP155O75694 1391 aa20.51■□□□□ 0.87
RTFDC1-201ENST00000023939 DUOX2Q9NRD8 1548 aa20.5■□□□□ 0.87
RTFDC1-201ENST00000023939 FOXD1Q16676 465 aa20.5■□□□□ 0.87
RTFDC1-201ENST00000023939 TRAPPC8Q9Y2L5 1435 aa20.49■□□□□ 0.87
RTFDC1-201ENST00000023939 UNC13BO14795 1591 aa20.49■□□□□ 0.87
RTFDC1-201ENST00000023939 FANCAO15360 1455 aa20.48■□□□□ 0.87
RTFDC1-201ENST00000023939 ERBINQ96RT1 1412 aa20.47■□□□□ 0.87
RTFDC1-201ENST00000023939 PKD2Q13563 968 aa20.47■□□□□ 0.87
RTFDC1-201ENST00000023939 TEX14Q8IWB6 1497 aa20.46■□□□□ 0.87
RTFDC1-201ENST00000023939 MAGI2Q86UL8 1455 aa20.43■□□□□ 0.86
RTFDC1-201ENST00000023939 FAM135AQ9P2D6 1515 aa20.43■□□□□ 0.86
RTFDC1-201ENST00000023939 L3MBTL2Q969R5 705 aa20.43■□□□□ 0.86
RTFDC1-201ENST00000023939 ZFYVE16Q7Z3T8 1539 aa20.42■□□□□ 0.86
RTFDC1-201ENST00000023939 SPAG9O60271 1321 aaKnown RBP20.41■□□□□ 0.86
RTFDC1-201ENST00000023939 ADGRL1O94910 1474 aa20.4■□□□□ 0.86
RTFDC1-201ENST00000023939 IQGAP3Q86VI3 1631 aa20.4■□□□□ 0.86
RTFDC1-201ENST00000023939 INO80Q9ULG1 1556 aaPredicted RBP20.39■□□□□ 0.85
RTFDC1-201ENST00000023939 CFAP74Q9C0B2 1584 aa20.38■□□□□ 0.85
RTFDC1-201ENST00000023939 MIER1Q8N108 512 aa20.38■□□□□ 0.85
RTFDC1-201ENST00000023939 SCAPERQ9BY12 1400 aa20.37■□□□□ 0.85
RTFDC1-201ENST00000023939 AFAP1Q8N556 730 aa20.36■□□□□ 0.85
RTFDC1-201ENST00000023939 ATP7AQ04656 1500 aa20.36■□□□□ 0.85
RTFDC1-201ENST00000023939 CD109Q6YHK3 1445 aa20.36■□□□□ 0.85
RTFDC1-201ENST00000023939 RIMBP3CA6NJZ7 1639 aa20.32■□□□□ 0.84
RTFDC1-201ENST00000023939 RIMBP3BA6NNM3 1639 aa20.32■□□□□ 0.84
RTFDC1-201ENST00000023939 RIMBP3Q9UFD9 1639 aa20.32■□□□□ 0.84
RTFDC1-201ENST00000023939 ATP10AO60312 1499 aa20.31■□□□□ 0.84
RTFDC1-201ENST00000023939 ZNF518AQ6AHZ1 1483 aa20.3■□□□□ 0.84
RTFDC1-201ENST00000023939 DEPDC5O75140 1603 aa20.3■□□□□ 0.84
RTFDC1-201ENST00000023939 NEO1Q92859 1461 aa20.29■□□□□ 0.84
RTFDC1-201ENST00000023939 UHRF1BP1Q6BDS2 1440 aa20.28■□□□□ 0.84
RTFDC1-201ENST00000023939 NBPF8Q3BBV2 869 aa20.28■□□□□ 0.84
RTFDC1-201ENST00000023939 EIF2AK4Q9P2K8 1649 aaKnown RBP20.28■□□□□ 0.84
RTFDC1-201ENST00000023939 GLI2P10070 1586 aa20.27■□□□□ 0.84
RTFDC1-201ENST00000023939 KDM5CP41229 1560 aa20.27■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms