RNA–Protein interactions for RNA: YMR247C

RKR1, Transcript of RING domain E3 ubiquitin ligase, yeast

Gene RKR1, Length 4,689 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RKR1	YMR247C	SPC110	P32380	944 aa		0.88	□□□□□ -2.27
RKR1	YMR247C	MRP20	P32387	263 aa		0.88	□□□□□ -2.27
RKR1	YMR247C	PAH1	P32567	862 aa		0.88	□□□□□ -2.27
RKR1	YMR247C	GDA1	P32621	518 aa		0.88	□□□□□ -2.27
RKR1	YMR247C	ECM32	P32644	1121 aa	Known RBP	0.88	□□□□□ -2.27
RKR1	YMR247C	VAM7	P32912	316 aa		0.88	□□□□□ -2.27
RKR1	YMR247C	CMC1	P36064	111 aa		0.88	□□□□□ -2.27
RKR1	YMR247C	MNN2	P38069	597 aa		0.88	□□□□□ -2.27
RKR1	YMR247C	DUG2	P38149	878 aa		0.88	□□□□□ -2.27
RKR1	YMR247C	EXO84	P38261	753 aa		0.88	□□□□□ -2.27
RKR1	YMR247C	YHR097C	P38809	366 aa	Known RBP	0.88	□□□□□ -2.27
RKR1	YMR247C	GUF1	P46943	645 aa		0.88	□□□□□ -2.27
RKR1	YMR247C	YDL186W	P48568	277 aa		0.88	□□□□□ -2.27
RKR1	YMR247C	YGR079W	P53249	370 aa		0.88	□□□□□ -2.27
RKR1	YMR247C	SOL4	P53315	255 aa		0.88	□□□□□ -2.27
RKR1	YMR247C	YNL234W	P53857	426 aa		0.88	□□□□□ -2.27
RKR1	YMR247C	HEF3	P53978	1044 aa	Known RBP	0.88	□□□□□ -2.27
RKR1	YMR247C	RPL15B	P54780	204 aa	Predicted RBP	0.88	□□□□□ -2.27
RKR1	YMR247C	IRC15	Q02733	499 aa		0.88	□□□□□ -2.27
RKR1	YMR247C	CIA1	Q05583	330 aa		0.88	□□□□□ -2.27
RKR1	YMR247C	REX4	Q08237	289 aa		0.88	□□□□□ -2.27
RKR1	YMR247C	YPL272C	Q08984	517 aa		0.88	□□□□□ -2.27
RKR1	YMR247C	PKH2	Q12236	1081 aa	Known RBP	0.88	□□□□□ -2.27
RKR1	YMR247C	YBR126W-A	Q8TGU7	68 aa		0.88	□□□□□ -2.27
RKR1	YMR247C	YOL087C	Q99247	1116 aa		0.88	□□□□□ -2.27
RKR1	YMR247C	BNR1	P40450	1375 aa		0.88	□□□□□ -2.27
RKR1	YMR247C	YCF1	P39109	1515 aa	Known RBP	0.88	□□□□□ -2.27
RKR1	YMR247C	SWR1	Q05471	1514 aa		0.88	□□□□□ -2.27
RKR1	YMR247C	NTE1	Q04958	1679 aa		0.88	□□□□□ -2.27
RKR1	YMR247C	SNF1	P06782	633 aa	Known RBP	0.88	□□□□□ -2.27
RKR1	YMR247C	YFL068W	P0CX99	160 aa		0.88	□□□□□ -2.27
RKR1	YMR247C	YLL066W-A	P0CY00	160 aa		0.88	□□□□□ -2.27
RKR1	YMR247C	YLL067W-A	P0CY01	160 aa		0.88	□□□□□ -2.27
RKR1	YMR247C	ADH4	P10127	382 aa		0.88	□□□□□ -2.27
RKR1	YMR247C	MRPL8	P22353	238 aa		0.88	□□□□□ -2.27
RKR1	YMR247C	CHS3	P29465	1165 aa		0.88	□□□□□ -2.27
RKR1	YMR247C	FUN26	P31381	517 aa		0.88	□□□□□ -2.27
RKR1	YMR247C	ERG1	P32476	496 aa	Known RBP	0.88	□□□□□ -2.27
RKR1	YMR247C	GCS1	P35197	352 aa		0.88	□□□□□ -2.27
RKR1	YMR247C	NUP133	P36161	1157 aa		0.88	□□□□□ -2.27
RKR1	YMR247C	RIM2	P38127	377 aa		0.88	□□□□□ -2.27
RKR1	YMR247C	LEU5	P38702	357 aa		0.88	□□□□□ -2.27
RKR1	YMR247C	VPS41	P38959	992 aa		0.88	□□□□□ -2.27
RKR1	YMR247C	PES4	P39684	611 aa		0.88	□□□□□ -2.27
RKR1	YMR247C	SEO1	P39709	593 aa		0.88	□□□□□ -2.27
RKR1	YMR247C	ARB1	P40024	610 aa	Known RBP	0.88	□□□□□ -2.27
RKR1	YMR247C	MAM33	P40513	266 aa		0.88	□□□□□ -2.27
RKR1	YMR247C	IMA5	P40884	581 aa		0.88	□□□□□ -2.27
RKR1	YMR247C	COS5	P47187	383 aa		0.88	□□□□□ -2.27
RKR1	YMR247C	MSO1	P53604	210 aa	Known RBP	0.88	□□□□□ -2.27
RKR1	YMR247C	DSL1	P53847	754 aa		0.88	□□□□□ -2.27
RKR1	YMR247C	ASI1	P54074	624 aa		0.88	□□□□□ -2.27
RKR1	YMR247C	TGL2	P54857	326 aa		0.88	□□□□□ -2.27
RKR1	YMR247C	UBP16	Q02863	499 aa		0.88	□□□□□ -2.27
RKR1	YMR247C	ODC1	Q03028	310 aa		0.88	□□□□□ -2.27
RKR1	YMR247C	YML131W	Q03102	365 aa		0.88	□□□□□ -2.27
RKR1	YMR247C	RPN9	Q04062	393 aa	Known RBP	0.88	□□□□□ -2.27
RKR1	YMR247C	EMI2	Q04409	500 aa	Known RBP	0.88	□□□□□ -2.27
RKR1	YMR247C	MRPL51	Q06090	140 aa	Predicted RBP	0.88	□□□□□ -2.27
RKR1	YMR247C	COS7	Q07788	383 aa		0.88	□□□□□ -2.27
RKR1	YMR247C	PRS5	Q12265	496 aa	Known RBP	0.88	□□□□□ -2.27
RKR1	YMR247C	MEX67	Q99257	599 aa	Known RBP	0.88	□□□□□ -2.27
RKR1	YMR247C	Q0142	Q9ZZW4	58 aa		0.88	□□□□□ -2.27
RKR1	YMR247C	TOP2	P06786	1428 aa	Known RBP	0.88	□□□□□ -2.27
RKR1	YMR247C	LEU4	P06208	619 aa	Known RBP	0.88	□□□□□ -2.27
RKR1	YMR247C	PRB1	P09232	635 aa		0.88	□□□□□ -2.27
RKR1	YMR247C	YEF3	P16521	1044 aa	Known RBP	0.88	□□□□□ -2.27
RKR1	YMR247C	SPO12	P17123	173 aa		0.88	□□□□□ -2.27
RKR1	YMR247C	YAP1	P19880	650 aa	Known RBP	0.88	□□□□□ -2.27
RKR1	YMR247C	AMD2	P22580	549 aa		0.88	□□□□□ -2.27
RKR1	YMR247C	RPS2	P25443	254 aa	Known RBP	0.88	□□□□□ -2.27
RKR1	YMR247C	HSP104	P31539	908 aa	Known RBP	0.88	□□□□□ -2.27
RKR1	YMR247C	EFM2	P38347	419 aa		0.88	□□□□□ -2.27
RKR1	YMR247C	ZAP1	P47043	880 aa		0.88	□□□□□ -2.27
RKR1	YMR247C	YJR011C	P47086	261 aa	Predicted RBP	0.88	□□□□□ -2.27
RKR1	YMR247C	YML6	P51998	286 aa		0.88	□□□□□ -2.27
RKR1	YMR247C	COS10	P52924	374 aa		0.88	□□□□□ -2.27
RKR1	YMR247C	CEG1	Q01159	459 aa	Predicted RBP	0.88	□□□□□ -2.27
RKR1	YMR247C	SHR3	Q02774	210 aa		0.88	□□□□□ -2.27
RKR1	YMR247C	GIP3	Q03016	1276 aa		0.88	□□□□□ -2.27
RKR1	YMR247C	EKI1	Q03764	534 aa		0.88	□□□□□ -2.27
RKR1	YMR247C	NSE1	Q07913	336 aa		0.88	□□□□□ -2.27
RKR1	YMR247C	DIS3	Q08162	1001 aa	Known RBP	0.88	□□□□□ -2.27
RKR1	YMR247C	SKI7	Q08491	747 aa	Predicted RBP	0.88	□□□□□ -2.27
RKR1	YMR247C	KEL3	Q08979	651 aa	Predicted RBP	0.88	□□□□□ -2.27
RKR1	YMR247C	ATG9	Q12142	997 aa		0.88	□□□□□ -2.27
RKR1	YMR247C	TPT1	Q12272	230 aa	Known RBP	0.88	□□□□□ -2.27
RKR1	YMR247C	REV3	P14284	1504 aa		0.88	□□□□□ -2.27
RKR1	YMR247C	TEF1	P02994	458 aa	Known RBP	0.88	□□□□□ -2.27
RKR1	YMR247C	YCR006C	P25350	157 aa		0.88	□□□□□ -2.27
RKR1	YMR247C	RRP7	P25368	297 aa	Predicted RBP	0.88	□□□□□ -2.27
RKR1	YMR247C	EFB1	P32471	206 aa	Known RBP	0.88	□□□□□ -2.27
RKR1	YMR247C	RAD5	P32849	1169 aa	Predicted RBP	0.88	□□□□□ -2.27
RKR1	YMR247C	YBL055C	P34220	418 aa	Predicted RBP	0.88	□□□□□ -2.27
RKR1	YMR247C	SWH1	P35845	1188 aa		0.88	□□□□□ -2.27
RKR1	YMR247C	MET30	P39014	640 aa		0.88	□□□□□ -2.27
RKR1	YMR247C	ELO1	P39540	310 aa		0.88	□□□□□ -2.27
RKR1	YMR247C	SPC72	P39723	622 aa		0.88	□□□□□ -2.27
RKR1	YMR247C	ALG5	P40350	334 aa		0.88	□□□□□ -2.27
RKR1	YMR247C	TES1	P41903	349 aa	Known RBP	0.88	□□□□□ -2.27

Retrieved 100 of 5,963 RNA–protein pairs in 22 ms