RNA–Protein interactions for RNA: ENST00000641009.1

LINC00339-211, long intergenic non-protein coding RNA 339, humanhuman

Gene LINC00339, Length 1,450 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-211ENST00000641009 USH1GQ495M9 461 aa16.31■□□□□ 0.2
LINC00339-211ENST00000641009 IQSEC1Q6DN90 963 aa16.31■□□□□ 0.2
LINC00339-211ENST00000641009 RNF207Q6ZRF8 634 aa16.31■□□□□ 0.2
LINC00339-211ENST00000641009 KIAA1211Q6ZU35 1233 aa16.31■□□□□ 0.2
LINC00339-211ENST00000641009 WDR19Q8NEZ3 1342 aa16.31■□□□□ 0.2
LINC00339-211ENST00000641009 FAM161BQ96MY7 647 aa16.31■□□□□ 0.2
LINC00339-211ENST00000641009 CTNNA3Q9UI47 895 aa16.31■□□□□ 0.2
LINC00339-211ENST00000641009 TBX21Q9UL17 535 aa16.31■□□□□ 0.2
LINC00339-211ENST00000641009 MYH7BA7E2Y1 1941 aa16.31■□□□□ 0.2
LINC00339-211ENST00000641009 GBF1Q92538 1859 aa16.31■□□□□ 0.2
LINC00339-211ENST00000641009 TIMP1P01033 207 aa16.3■□□□□ 0.2
LINC00339-211ENST00000641009 NT5C2P49902 561 aa16.3■□□□□ 0.2
LINC00339-211ENST00000641009 RPS6P62753 249 aaKnown RBP16.3■□□□□ 0.2
LINC00339-211ENST00000641009 FPGSQ05932 587 aa16.3■□□□□ 0.2
LINC00339-211ENST00000641009 CCDC178Q5BJE1 867 aa16.3■□□□□ 0.2
LINC00339-211ENST00000641009 FAM126BQ8IXS8 530 aa16.3■□□□□ 0.2
LINC00339-211ENST00000641009 ANKS1AQ92625 1134 aa16.3■□□□□ 0.2
LINC00339-211ENST00000641009 FAM109BQ6ICB4 259 aaPredicted RBP16.29■□□□□ 0.2
LINC00339-211ENST00000641009 KRT23Q9C075 422 aa16.29■□□□□ 0.2
LINC00339-211ENST00000641009 CNNM2Q9H8M5 875 aa16.29■□□□□ 0.2
LINC00339-211ENST00000641009 PNMA2Q9UL42 364 aa16.29■□□□□ 0.2
LINC00339-211ENST00000641009 STXBP5LQ9Y2K9 1186 aa16.29■□□□□ 0.2
LINC00339-211ENST00000641009 CDC37Q16543 378 aaPredicted RBP16.29■□□□□ 0.2
LINC00339-211ENST00000641009 ADGRF4Q8IZF3 695 aa16.29■□□□□ 0.2
LINC00339-211ENST00000641009 SLC17A8Q8NDX2 589 aa16.29■□□□□ 0.2
LINC00339-211ENST00000641009 RNPC3Q96LT9 517 aaKnown RBP16.29■□□□□ 0.2
LINC00339-211ENST00000641009 GUCD1Q96NT3 240 aa16.29■□□□□ 0.2
LINC00339-211ENST00000641009 UBAC1Q9BSL1 405 aa16.29■□□□□ 0.2
LINC00339-211ENST00000641009 WDR11Q9BZH6 1224 aa16.29■□□□□ 0.2
LINC00339-211ENST00000641009 Q9Y3F1 56 aa16.29■□□□□ 0.2
LINC00339-211ENST00000641009 SCN10AQ9Y5Y9 1956 aa16.28■□□□□ 0.2
LINC00339-211ENST00000641009 CHD9Q3L8U1 2897 aa16.28■□□□□ 0.2
LINC00339-211ENST00000641009 GRIN2DO15399 1336 aa16.28■□□□□ 0.2
LINC00339-211ENST00000641009 LOC102724159A0A0B4J2E5 919 aa16.28■□□□□ 0.2
LINC00339-211ENST00000641009 TLR3O15455 904 aaKnown RBP16.28■□□□□ 0.2
LINC00339-211ENST00000641009 ZEB2O60315 1214 aa16.28■□□□□ 0.2
LINC00339-211ENST00000641009 ITGA7Q13683 1181 aa16.28■□□□□ 0.2
LINC00339-211ENST00000641009 PWP2Q15269 919 aaKnown RBP16.28■□□□□ 0.2
LINC00339-211ENST00000641009 DUSP28Q4G0W2 176 aa16.28■□□□□ 0.2
LINC00339-211ENST00000641009 ASPRV1Q53RT3 343 aa16.28■□□□□ 0.2
LINC00339-211ENST00000641009 ZNF697Q5TEC3 545 aa16.28■□□□□ 0.2
LINC00339-211ENST00000641009 PPP1R12CQ9BZL4 782 aa16.28■□□□□ 0.2
LINC00339-211ENST00000641009 MYO9BQ13459 2157 aa16.28■□□□□ 0.2
LINC00339-211ENST00000641009 VCANP13611 3396 aa16.28■□□□□ 0.2
LINC00339-211ENST00000641009 RAD50Q92878 1312 aa16.27■□□□□ 0.2
LINC00339-211ENST00000641009 CABYRO75952 493 aa16.27■□□□□ 0.19
LINC00339-211ENST00000641009 CD4P01730 458 aa16.27■□□□□ 0.19
LINC00339-211ENST00000641009 PARP1P09874 1014 aaKnown RBP16.27■□□□□ 0.19
LINC00339-211ENST00000641009 PSMC6P62333 389 aa16.27■□□□□ 0.19
LINC00339-211ENST00000641009 SMAD3P84022 425 aaKnown RBP16.27■□□□□ 0.19
LINC00339-211ENST00000641009 PTH1RQ03431 593 aa16.27■□□□□ 0.19
LINC00339-211ENST00000641009 PDE4DQ08499 809 aa16.27■□□□□ 0.19
LINC00339-211ENST00000641009 IFIT1BQ5T764 474 aaKnown RBP16.27■□□□□ 0.19
LINC00339-211ENST00000641009 MFSD5Q6N075 450 aa16.27■□□□□ 0.19
LINC00339-211ENST00000641009 CYB5R4Q7L1T6 521 aa16.27■□□□□ 0.19
LINC00339-211ENST00000641009 SLC43A3Q8NBI5 491 aa16.27■□□□□ 0.19
LINC00339-211ENST00000641009 TBC1D5Q92609 795 aa16.27■□□□□ 0.19
LINC00339-211ENST00000641009 VAT1LQ9HCJ6 419 aa16.27■□□□□ 0.19
LINC00339-211ENST00000641009 SCN5AQ14524 2016 aa16.27■□□□□ 0.19
LINC00339-211ENST00000641009 RBM47A0AV96 593 aaKnown RBP16.26■□□□□ 0.19
LINC00339-211ENST00000641009 DHX16O60231 1041 aaKnown RBP16.26■□□□□ 0.19
LINC00339-211ENST00000641009 CSF2RAP15509 400 aa16.26■□□□□ 0.19
LINC00339-211ENST00000641009 EDNRBP24530 442 aa16.26■□□□□ 0.19
LINC00339-211ENST00000641009 CHMLP26374 656 aa16.26■□□□□ 0.19
LINC00339-211ENST00000641009 SEC23AQ15436 765 aa16.26■□□□□ 0.19
LINC00339-211ENST00000641009 QRICH1Q2TAL8 776 aa16.26■□□□□ 0.19
LINC00339-211ENST00000641009 STAG2Q8N3U4 1231 aa16.26■□□□□ 0.19
LINC00339-211ENST00000641009 DNERQ8NFT8 737 aa16.26■□□□□ 0.19
LINC00339-211ENST00000641009 BUD13Q9BRD0 619 aaKnown RBP eCLIP16.26■□□□□ 0.19
LINC00339-211ENST00000641009 TRIP12Q14669 1992 aaPredicted RBP16.26■□□□□ 0.19
LINC00339-211ENST00000641009 ABCB11O95342 1321 aa16.25■□□□□ 0.19
LINC00339-211ENST00000641009 CYP21A2P08686 494 aa16.25■□□□□ 0.19
LINC00339-211ENST00000641009 CYP2C18P33260 490 aa16.25■□□□□ 0.19
LINC00339-211ENST00000641009 RGS22Q8NE09 1264 aa16.25■□□□□ 0.19
LINC00339-211ENST00000641009 OR6J1Q8NGC5 347 aa16.25■□□□□ 0.19
LINC00339-211ENST00000641009 RUFY2Q8WXA3 655 aa16.25■□□□□ 0.19
LINC00339-211ENST00000641009 MPHOSPH6Q99547 160 aaKnown RBP16.25■□□□□ 0.19
LINC00339-211ENST00000641009 TRPV6Q9H1D0 765 aa16.25■□□□□ 0.19
LINC00339-211ENST00000641009 JMJD4Q9H9V9 463 aa16.25■□□□□ 0.19
LINC00339-211ENST00000641009 TAF6LQ9Y6J9 622 aa16.25■□□□□ 0.19
LINC00339-211ENST00000641009 CUL9Q8IWT3 2517 aa16.25■□□□□ 0.19
LINC00339-211ENST00000641009 UMODL1Q5DID0 1318 aa16.24■□□□□ 0.19
LINC00339-211ENST00000641009 B4GALT4O60513 344 aa16.24■□□□□ 0.19
LINC00339-211ENST00000641009 PPIGQ13427 754 aaKnown RBP eCLIP16.24■□□□□ 0.19
LINC00339-211ENST00000641009 PPP2R5BQ15173 497 aa16.24■□□□□ 0.19
LINC00339-211ENST00000641009 C16orf59Q7L2K0 433 aa16.24■□□□□ 0.19
LINC00339-211ENST00000641009 FBXO11Q86XK2 927 aa16.24■□□□□ 0.19
LINC00339-211ENST00000641009 TMEM199Q8N511 208 aa16.24■□□□□ 0.19
LINC00339-211ENST00000641009 COPS5Q92905 334 aa16.24■□□□□ 0.19
LINC00339-211ENST00000641009 TTYH1Q9H313 450 aaPredicted RBP16.24■□□□□ 0.19
LINC00339-211ENST00000641009 SEMA6BQ9H3T3 888 aa16.24■□□□□ 0.19
LINC00339-211ENST00000641009 COL20A1Q9P218 1284 aa16.24■□□□□ 0.19
LINC00339-211ENST00000641009 CHD7Q9P2D1 2997 aa16.24■□□□□ 0.19
LINC00339-211ENST00000641009 MYL3P08590 195 aa16.23■□□□□ 0.19
LINC00339-211ENST00000641009 ACRP10323 421 aa16.23■□□□□ 0.19
LINC00339-211ENST00000641009 CPT1AP50416 773 aa16.23■□□□□ 0.19
LINC00339-211ENST00000641009 TRDNQ13061 729 aa16.23■□□□□ 0.19
LINC00339-211ENST00000641009 TMEM240Q5SV17 173 aa16.23■□□□□ 0.19
LINC00339-211ENST00000641009 SYTL5Q8TDW5 730 aaPredicted RBP16.23■□□□□ 0.19
LINC00339-211ENST00000641009 SCFD2Q8WU76 684 aa16.23■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms