RNA–Protein interactions for RNA: ENST00000640653.1

VEGFA-232, Transcript of vascular endothelial growth factor A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VEGFA, Length 1,170 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VEGFA-232ENST00000640653 SOX1O00570 391 aaPredicted RBP29.39■■■□□ 2.3
VEGFA-232ENST00000640653 SMPD1P17405 629 aa29.39■■■□□ 2.3
VEGFA-232ENST00000640653 MRPL12P52815 198 aaKnown RBP29.39■■■□□ 2.3
VEGFA-232ENST00000640653 QRICH1Q2TAL8 776 aa29.39■■■□□ 2.3
VEGFA-232ENST00000640653 ANKRD33Q7Z3H0 272 aa29.39■■■□□ 2.3
VEGFA-232ENST00000640653 VTI1AQ96AJ9 217 aa29.39■■■□□ 2.3
VEGFA-232ENST00000640653 TOX2Q96NM4 488 aa29.39■■■□□ 2.3
VEGFA-232ENST00000640653 JMJD4Q9H9V9 463 aa29.39■■■□□ 2.3
VEGFA-232ENST00000640653 VAT1LQ9HCJ6 419 aa29.39■■■□□ 2.3
VEGFA-232ENST00000640653 Q9Y3F1 56 aa29.39■■■□□ 2.3
VEGFA-232ENST00000640653 MROH7Q68CQ1 1323 aa29.39■■■□□ 2.3
VEGFA-232ENST00000640653 DCDC2CA8MYV0 355 aa29.38■■■□□ 2.29
VEGFA-232ENST00000640653 PDE4DQ08499 809 aa29.38■■■□□ 2.29
VEGFA-232ENST00000640653 WTAPQ15007 396 aa29.38■■■□□ 2.29
VEGFA-232ENST00000640653 SH3RF1Q7Z6J0 888 aa29.38■■■□□ 2.29
VEGFA-232ENST00000640653 FBXO11Q86XK2 927 aa29.38■■■□□ 2.29
VEGFA-232ENST00000640653 STAG2Q8N3U4 1231 aa29.38■■■□□ 2.29
VEGFA-232ENST00000640653 MRPL11Q9Y3B7 192 aaKnown RBP29.38■■■□□ 2.29
VEGFA-232ENST00000640653 TAF6LQ9Y6J9 622 aa29.38■■■□□ 2.29
VEGFA-232ENST00000640653 TRIM43BA6NCK2 446 aa29.37■■■□□ 2.29
VEGFA-232ENST00000640653 KLRF2D3W0D1 207 aa29.37■■■□□ 2.29
VEGFA-232ENST00000640653 CTAGE5O15320 804 aa29.37■■■□□ 2.29
VEGFA-232ENST00000640653 DYNC1LI2O43237 492 aaPredicted RBP29.37■■■□□ 2.29
VEGFA-232ENST00000640653 ZEB2O60315 1214 aa29.37■■■□□ 2.29
VEGFA-232ENST00000640653 BEX3Q00994 111 aa29.37■■■□□ 2.29
VEGFA-232ENST00000640653 FSCN1Q16658 493 aaKnown RBP29.37■■■□□ 2.29
VEGFA-232ENST00000640653 STOX1Q6ZVD7 989 aa29.37■■■□□ 2.29
VEGFA-232ENST00000640653 MCF2L2Q86YR7 1114 aa29.37■■■□□ 2.29
VEGFA-232ENST00000640653 TRIM43Q96BQ3 446 aaPredicted RBP29.37■■■□□ 2.29
VEGFA-232ENST00000640653 MAD2L2Q9UI95 211 aa29.37■■■□□ 2.29
VEGFA-232ENST00000640653 LTBP2Q14767 1821 aa29.36■■■□□ 2.29
VEGFA-232ENST00000640653 A0A0U1RQG5 324 aaPredicted RBP29.36■■■□□ 2.29
VEGFA-232ENST00000640653 BADQ92934 168 aa29.36■■■□□ 2.29
VEGFA-232ENST00000640653 LRCH3Q96II8 777 aa29.36■■■□□ 2.29
VEGFA-232ENST00000640653 ESYT1Q9BSJ8 1104 aa29.36■■■□□ 2.29
VEGFA-232ENST00000640653 PALM3A6NDB9 673 aaPredicted RBP29.35■■■□□ 2.29
VEGFA-232ENST00000640653 DUSP28Q4G0W2 176 aa29.35■■■□□ 2.29
VEGFA-232ENST00000640653 BMP2KLQ5H9B9 411 aa29.35■■■□□ 2.29
VEGFA-232ENST00000640653 TMEM67Q5HYA8 995 aa29.35■■■□□ 2.29
VEGFA-232ENST00000640653 AMNQ9BXJ7 453 aa29.35■■■□□ 2.29
VEGFA-232ENST00000640653 WDR11Q9BZH6 1224 aa29.35■■■□□ 2.29
VEGFA-232ENST00000640653 LSG1Q9H089 658 aaKnown RBP29.35■■■□□ 2.29
VEGFA-232ENST00000640653 TMEM39AQ9NV64 488 aa29.35■■■□□ 2.29
VEGFA-232ENST00000640653 KIAA0355O15063 1070 aa29.34■■■□□ 2.29
VEGFA-232ENST00000640653 CABYRO75952 493 aa29.34■■■□□ 2.29
VEGFA-232ENST00000640653 EDNRBP24530 442 aa29.34■■■□□ 2.29
VEGFA-232ENST00000640653 GRM4Q14833 912 aa29.34■■■□□ 2.29
VEGFA-232ENST00000640653 CHST3Q7LGC8 479 aa29.34■■■□□ 2.29
VEGFA-232ENST00000640653 RBM47A0AV96 593 aaKnown RBP29.33■■■□□ 2.29
VEGFA-232ENST00000640653 ARVCFO00192 962 aa29.33■■■□□ 2.29
VEGFA-232ENST00000640653 RAG1P15918 1043 aa29.33■■■□□ 2.29
VEGFA-232ENST00000640653 FAAP100Q0VG06 881 aa29.33■■■□□ 2.29
VEGFA-232ENST00000640653 CATIPQ7Z7H3 387 aa29.33■■■□□ 2.29
VEGFA-232ENST00000640653 MB21D2Q8IYB1 491 aaPredicted RBP29.33■■■□□ 2.29
VEGFA-232ENST00000640653 CDK7P50613 346 aa29.32■■■□□ 2.28
VEGFA-232ENST00000640653 GPR153Q6NV75 609 aa29.32■■■□□ 2.28
VEGFA-232ENST00000640653 MTMR8Q96EF0 704 aa29.32■■■□□ 2.28
VEGFA-232ENST00000640653 ZBTB5O15062 677 aa29.31■■■□□ 2.28
VEGFA-232ENST00000640653 PTGS1P23219 599 aa29.31■■■□□ 2.28
VEGFA-232ENST00000640653 ANTXR2P58335 489 aa29.31■■■□□ 2.28
VEGFA-232ENST00000640653 TRAF1Q13077 416 aa29.31■■■□□ 2.28
VEGFA-232ENST00000640653 TMEM63BQ5T3F8 832 aa29.31■■■□□ 2.28
VEGFA-232ENST00000640653 CASC1Q6TDU7 716 aa29.31■■■□□ 2.28
VEGFA-232ENST00000640653 CXCL17Q6UXB2 119 aa29.31■■■□□ 2.28
VEGFA-232ENST00000640653 SYTL5Q8TDW5 730 aaPredicted RBP29.31■■■□□ 2.28
VEGFA-232ENST00000640653 SCFD2Q8WU76 684 aa29.31■■■□□ 2.28
VEGFA-232ENST00000640653 TBC1D5Q92609 795 aa29.31■■■□□ 2.28
VEGFA-232ENST00000640653 MTA3Q9BTC8 594 aa29.31■■■□□ 2.28
VEGFA-232ENST00000640653 SENP2Q9HC62 589 aa29.31■■■□□ 2.28
VEGFA-232ENST00000640653 ANO2Q9NQ90 1003 aa29.31■■■□□ 2.28
VEGFA-232ENST00000640653 NKRFO15226 690 aaKnown RBP eCLIP29.3■■■□□ 2.284e-7■□□□□ 10.1
VEGFA-232ENST00000640653 TLR3O15455 904 aaKnown RBP29.3■■■□□ 2.28
VEGFA-232ENST00000640653 TROAPQ12815 778 aa29.3■■■□□ 2.28
VEGFA-232ENST00000640653 PPP2R5BQ15173 497 aa29.3■■■□□ 2.28
VEGFA-232ENST00000640653 IGDCC4Q8TDY8 1250 aa29.3■■■□□ 2.28
VEGFA-232ENST00000640653 NSUN6Q8TEA1 469 aaKnown RBP29.3■■■□□ 2.28
VEGFA-232ENST00000640653 SZT2Q5T011 3432 aa29.3■■■□□ 2.28
VEGFA-232ENST00000640653 ITGB8P26012 769 aa29.29■■■□□ 2.28
VEGFA-232ENST00000640653 SKAP1Q86WV1 359 aa29.29■■■□□ 2.28
VEGFA-232ENST00000640653 OR6J1Q8NGC5 347 aa29.29■■■□□ 2.28
VEGFA-232ENST00000640653 TAAR1Q96RJ0 339 aa29.29■■■□□ 2.28
VEGFA-232ENST00000640653 SEZ6LQ9BYH1 1024 aa29.29■■■□□ 2.28
VEGFA-232ENST00000640653 RIOX1Q9H6W3 641 aa29.29■■■□□ 2.28
VEGFA-232ENST00000640653 LAMA3Q16787 3333 aa29.28■■■□□ 2.28
VEGFA-232ENST00000640653 SLC27A2O14975 620 aa29.28■■■□□ 2.28
VEGFA-232ENST00000640653 CPT1AP50416 773 aa29.28■■■□□ 2.28
VEGFA-232ENST00000640653 HOMER1Q86YM7 354 aa29.28■■■□□ 2.28
VEGFA-232ENST00000640653 IWS1Q96ST2 819 aa29.28■■■□□ 2.28
VEGFA-232ENST00000640653 RMDN3Q96TC7 470 aa29.28■■■□□ 2.28
VEGFA-232ENST00000640653 TBX21Q9UL17 535 aa29.28■■■□□ 2.28
VEGFA-232ENST00000640653 PCDHA1Q9Y5I3 950 aa29.28■■■□□ 2.28
VEGFA-232ENST00000640653 PRC1O43663 620 aa29.27■■■□□ 2.28
VEGFA-232ENST00000640653 CFBP00751 764 aa29.27■■■□□ 2.28
VEGFA-232ENST00000640653 MCM5P33992 734 aa29.27■■■□□ 2.28
VEGFA-232ENST00000640653 TTLL4Q14679 1199 aa29.27■■■□□ 2.28
VEGFA-232ENST00000640653 BRDTQ58F21 947 aaPredicted RBP29.27■■■□□ 2.28
VEGFA-232ENST00000640653 CREB3L3Q68CJ9 461 aa29.27■■■□□ 2.28
VEGFA-232ENST00000640653 FAM126BQ8IXS8 530 aa29.27■■■□□ 2.28
VEGFA-232ENST00000640653 SLC43A3Q8NBI5 491 aa29.27■■■□□ 2.28
VEGFA-232ENST00000640653 MAP3K14Q99558 947 aa29.27■■■□□ 2.28
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms