RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 TRIM62Q9BVG3 475 aa6.68□□□□□ -1.34
SCN1A-217ENST00000637988 TSSK1BQ9BXA7 367 aa6.68□□□□□ -1.34
SCN1A-217ENST00000637988 EVA1BQ9NVM1 165 aa6.68□□□□□ -1.34
SCN1A-217ENST00000637988 SUCLA2Q9P2R7 463 aaPredicted RBP6.68□□□□□ -1.34
SCN1A-217ENST00000637988 PHKG1Q16816 387 aa6.68□□□□□ -1.34
SCN1A-217ENST00000637988 MMEL1Q495T6 779 aa6.68□□□□□ -1.34
SCN1A-217ENST00000637988 KLC3Q6P597 504 aa6.68□□□□□ -1.34
SCN1A-217ENST00000637988 MYLK4Q86YV6 388 aaPredicted RBP6.68□□□□□ -1.34
SCN1A-217ENST00000637988 IFT20Q8IY31 132 aa6.68□□□□□ -1.34
SCN1A-217ENST00000637988 LRRC47Q8N1G4 583 aaKnown RBP6.68□□□□□ -1.34
SCN1A-217ENST00000637988 MEIS3Q99687 375 aa6.68□□□□□ -1.34
SCN1A-217ENST00000637988 ZNF341Q9BYN7 854 aa6.68□□□□□ -1.34
SCN1A-217ENST00000637988 MLH3Q9UHC1 1453 aa6.68□□□□□ -1.34
SCN1A-217ENST00000637988 KIAA0556O60303 1618 aa6.68□□□□□ -1.34
SCN1A-217ENST00000637988 KRT15P19012 456 aa6.68□□□□□ -1.34
SCN1A-217ENST00000637988 IRAK1BP1Q5VVH5 260 aa6.68□□□□□ -1.34
SCN1A-217ENST00000637988 TWF2Q6IBS0 349 aaKnown RBP6.68□□□□□ -1.34
SCN1A-217ENST00000637988 FAM160B2Q86V87 743 aa6.68□□□□□ -1.34
SCN1A-217ENST00000637988 TOPORSQ9NS56 1045 aaPredicted RBP6.68□□□□□ -1.34
SCN1A-217ENST00000637988 PANK4Q9NVE7 773 aa6.68□□□□□ -1.34
SCN1A-217ENST00000637988 ABCC2Q92887 1545 aa6.68□□□□□ -1.34
SCN1A-217ENST00000637988 GTPBP6O43824 516 aaPredicted RBP6.68□□□□□ -1.34
SCN1A-217ENST00000637988 CYBBP04839 570 aa6.68□□□□□ -1.34
SCN1A-217ENST00000637988 CRKLP46109 303 aaKnown RBP6.68□□□□□ -1.34
SCN1A-217ENST00000637988 THOC5Q13769 683 aaKnown RBP6.68□□□□□ -1.34
SCN1A-217ENST00000637988 DENND2CQ68D51 928 aa6.68□□□□□ -1.34
SCN1A-217ENST00000637988 CEP85Q6P2H3 762 aa6.68□□□□□ -1.34
SCN1A-217ENST00000637988 ORAI2Q96SN7 254 aa6.68□□□□□ -1.34
SCN1A-217ENST00000637988 FCER1AP12319 257 aa6.67□□□□□ -1.34
SCN1A-217ENST00000637988 SAT1P21673 171 aa6.67□□□□□ -1.34
SCN1A-217ENST00000637988 ZNF157P51786 506 aaPredicted RBP6.67□□□□□ -1.34
SCN1A-217ENST00000637988 ST8SIA6P61647 398 aa6.67□□□□□ -1.34
SCN1A-217ENST00000637988 COG7P83436 770 aa6.67□□□□□ -1.34
SCN1A-217ENST00000637988 RAD51Q06609 339 aa6.67□□□□□ -1.34
SCN1A-217ENST00000637988 ARHGAP44Q17R89 818 aa6.67□□□□□ -1.34
SCN1A-217ENST00000637988 BZW1Q7L1Q6 419 aaKnown RBP6.67□□□□□ -1.34
SCN1A-217ENST00000637988 AFG1LQ8WV93 481 aa6.67□□□□□ -1.34
SCN1A-217ENST00000637988 KMT5AQ9NQR1 393 aa6.67□□□□□ -1.34
SCN1A-217ENST00000637988 BZW2Q9Y6E2 419 aaKnown RBP6.67□□□□□ -1.34
SCN1A-217ENST00000637988 NUP160Q12769 1436 aa6.67□□□□□ -1.34
SCN1A-217ENST00000637988 SHROOM2Q13796 1616 aa6.67□□□□□ -1.34
SCN1A-217ENST00000637988 POLR2DO15514 142 aaKnown RBP6.67□□□□□ -1.34
SCN1A-217ENST00000637988 PTK2Q05397 1052 aa6.67□□□□□ -1.34
SCN1A-217ENST00000637988 PPARAQ07869 468 aa6.67□□□□□ -1.34
SCN1A-217ENST00000637988 PEX26Q7Z412 305 aa6.67□□□□□ -1.34
SCN1A-217ENST00000637988 DHX38Q92620 1227 aaKnown RBP6.67□□□□□ -1.34
SCN1A-217ENST00000637988 ZSCAN10Q96SZ4 725 aaPredicted RBP6.67□□□□□ -1.34
SCN1A-217ENST00000637988 KANSL2Q9H9L4 492 aa6.67□□□□□ -1.34
SCN1A-217ENST00000637988 RAB23Q9ULC3 237 aa6.67□□□□□ -1.34
SCN1A-217ENST00000637988 ASNSP08243 561 aa6.67□□□□□ -1.34
SCN1A-217ENST00000637988 SRGAP2CP0DJJ0 459 aa6.67□□□□□ -1.34
SCN1A-217ENST00000637988 RBM10P98175 930 aaKnown RBP6.67□□□□□ -1.34
SCN1A-217ENST00000637988 TNFAIP2Q03169 654 aa6.67□□□□□ -1.34
SCN1A-217ENST00000637988 LMNB2Q03252 620 aa6.67□□□□□ -1.34
SCN1A-217ENST00000637988 LRRC31Q6UY01 552 aa6.67□□□□□ -1.34
SCN1A-217ENST00000637988 CTAGE3PQ8IX95 158 aa6.67□□□□□ -1.34
SCN1A-217ENST00000637988 SELENONQ9NZV5 590 aa6.67□□□□□ -1.34
SCN1A-217ENST00000637988 CALCOCO1Q9P1Z2 691 aa6.67□□□□□ -1.34
SCN1A-217ENST00000637988 CASP2P42575 452 aa6.67□□□□□ -1.34
SCN1A-217ENST00000637988 ZNF131P52739 623 aa6.67□□□□□ -1.34
SCN1A-217ENST00000637988 PPP2R3AQ06190 1150 aa6.67□□□□□ -1.34
SCN1A-217ENST00000637988 DBN1Q16643 649 aa6.67□□□□□ -1.34
SCN1A-217ENST00000637988 ACCSLQ4AC99 568 aa6.67□□□□□ -1.34
SCN1A-217ENST00000637988 DDX53Q86TM3 631 aaKnown RBP6.67□□□□□ -1.34
SCN1A-217ENST00000637988 NT5DC4Q86YG4 428 aa6.67□□□□□ -1.34
SCN1A-217ENST00000637988 GTF3C2Q8WUA4 911 aaPredicted RBP6.67□□□□□ -1.34
SCN1A-217ENST00000637988 FAM167AQ96KS9 214 aa6.67□□□□□ -1.34
SCN1A-217ENST00000637988 KATNAL1Q9BW62 490 aa6.67□□□□□ -1.34
SCN1A-217ENST00000637988 YIPF2Q9BWQ6 316 aa6.67□□□□□ -1.34
SCN1A-217ENST00000637988 DBNDD1Q9H9R9 158 aa6.67□□□□□ -1.34
SCN1A-217ENST00000637988 EHD2Q9NZN4 543 aa6.67□□□□□ -1.34
SCN1A-217ENST00000637988 ZKSCAN5Q9Y2L8 839 aa6.67□□□□□ -1.34
SCN1A-217ENST00000637988 E4F1Q66K89 784 aaPredicted RBP6.67□□□□□ -1.34
SCN1A-217ENST00000637988 CCDC13Q8IYE1 715 aa6.67□□□□□ -1.34
SCN1A-217ENST00000637988 SH3TC2Q8TF17 1288 aa6.67□□□□□ -1.34
SCN1A-217ENST00000637988 SECISBP2LQ93073 1101 aaKnown RBP6.67□□□□□ -1.34
SCN1A-217ENST00000637988 WDR11Q9BZH6 1224 aa6.67□□□□□ -1.34
SCN1A-217ENST00000637988 STN1Q9H668 368 aaKnown RBP6.67□□□□□ -1.34
SCN1A-217ENST00000637988 CDC42BPGQ6DT37 1551 aa6.67□□□□□ -1.34
SCN1A-217ENST00000637988 ABCA5Q8WWZ7 1642 aa6.67□□□□□ -1.34
SCN1A-217ENST00000637988 RASSF2P50749 326 aa6.67□□□□□ -1.34
SCN1A-217ENST00000637988 DNAJC10Q8IXB1 793 aa6.67□□□□□ -1.34
SCN1A-217ENST00000637988 EYA1Q99502 592 aa6.67□□□□□ -1.34
SCN1A-217ENST00000637988 DNAJC7Q99615 494 aa6.67□□□□□ -1.34
SCN1A-217ENST00000637988 AMFRQ9UKV5 643 aa6.67□□□□□ -1.34
SCN1A-217ENST00000637988 UBXN8O00124 270 aa6.67□□□□□ -1.34
SCN1A-217ENST00000637988 TNPO2O14787 897 aaKnown RBP6.67□□□□□ -1.34
SCN1A-217ENST00000637988 ESRRBO95718 433 aa6.67□□□□□ -1.34
SCN1A-217ENST00000637988 A1BGP04217 495 aa6.67□□□□□ -1.34
SCN1A-217ENST00000637988 ERCC3P19447 782 aa6.67□□□□□ -1.34
SCN1A-217ENST00000637988 KLHL30Q0D2K2 578 aa6.67□□□□□ -1.34
SCN1A-217ENST00000637988 SZRD1Q7Z422 152 aa6.67□□□□□ -1.34
SCN1A-217ENST00000637988 ANKRD44Q8N8A2 993 aa6.67□□□□□ -1.34
SCN1A-217ENST00000637988 FAM149B1Q96BN6 582 aa6.67□□□□□ -1.34
SCN1A-217ENST00000637988 HACL1Q9UJ83 578 aa6.67□□□□□ -1.34
SCN1A-217ENST00000637988 GPATCH8Q9UKJ3 1502 aaKnown RBP6.67□□□□□ -1.34
SCN1A-217ENST00000637988 WDR97A6NE52 1622 aa6.66□□□□□ -1.34
SCN1A-217ENST00000637988 TRAPPC3O43617 180 aa6.66□□□□□ -1.34
SCN1A-217ENST00000637988 TTC4O95801 387 aa6.66□□□□□ -1.34
SCN1A-217ENST00000637988 CTDSPL2Q05D32 466 aa6.66□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms