RNA–Protein interactions for RNA: ENST00000637985.1

CLN3-264, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 764 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-264ENST00000637985 TMCO2Q7Z6W1 182 aaPredicted RBP19.49■□□□□ 0.71
CLN3-264ENST00000637985 RHPN1Q8TCX5 695 aa19.49■□□□□ 0.71
CLN3-264ENST00000637985 NEK9Q8TD19 979 aa19.49■□□□□ 0.71
CLN3-264ENST00000637985 MKL1Q969V6 931 aa19.49■□□□□ 0.71
CLN3-264ENST00000637985 DNAJC2Q99543 621 aaKnown RBP19.49■□□□□ 0.71
CLN3-264ENST00000637985 MTG1Q9BT17 334 aaPredicted RBP19.49■□□□□ 0.71
CLN3-264ENST00000637985 VTA1Q9NP79 307 aa19.49■□□□□ 0.71
CLN3-264ENST00000637985 RNF146Q9NTX7 359 aa19.49■□□□□ 0.71
CLN3-264ENST00000637985 CLIP2Q9UDT6 1046 aa19.49■□□□□ 0.71
CLN3-264ENST00000637985 IGKV6D-41A0A0C4DH26 115 aa19.48■□□□□ 0.71
CLN3-264ENST00000637985 BFSP2Q13515 415 aa19.48■□□□□ 0.71
CLN3-264ENST00000637985 NBPF20Q3BBV1 942 aa19.48■□□□□ 0.71
CLN3-264ENST00000637985 NFRKBQ6P4R8 1299 aa19.48■□□□□ 0.71
CLN3-264ENST00000637985 HFE2Q6ZVN8 426 aa19.48■□□□□ 0.71
CLN3-264ENST00000637985 MORC4Q8TE76 937 aa19.48■□□□□ 0.71
CLN3-264ENST00000637985 ANKS1AQ92625 1134 aa19.48■□□□□ 0.71
CLN3-264ENST00000637985 KIF1BPQ96EK5 621 aa19.48■□□□□ 0.71
CLN3-264ENST00000637985 TGS1Q96RS0 853 aaKnown RBP19.48■□□□□ 0.71
CLN3-264ENST00000637985 PHOX2BQ99453 314 aa19.48■□□□□ 0.71
CLN3-264ENST00000637985 ZBED2Q9BTP6 218 aa19.48■□□□□ 0.71
CLN3-264ENST00000637985 MTUS1Q9ULD2 1270 aa19.48■□□□□ 0.71
CLN3-264ENST00000637985 CFAP54Q96N23 3096 aa19.48■□□□□ 0.71
CLN3-264ENST00000637985 MYH4Q9Y623 1939 aa19.48■□□□□ 0.71
CLN3-264ENST00000637985 SIP14410 1827 aa19.47■□□□□ 0.71
CLN3-264ENST00000637985 TRIP12Q14669 1992 aaPredicted RBP19.47■□□□□ 0.71
CLN3-264ENST00000637985 GPNMBQ14956 572 aa19.47■□□□□ 0.71
CLN3-264ENST00000637985 FAM47CQ5HY64 1035 aa19.47■□□□□ 0.71
CLN3-264ENST00000637985 SIRT2Q8IXJ6 389 aa19.47■□□□□ 0.71
CLN3-264ENST00000637985 CLASRPQ8N2M8 674 aaKnown RBP19.47■□□□□ 0.71
CLN3-264ENST00000637985 RAD9AQ99638 391 aa19.47■□□□□ 0.71
CLN3-264ENST00000637985 SYNPO2Q9UMS6 1093 aa19.47■□□□□ 0.71
CLN3-264ENST00000637985 SLC4A4Q9Y6R1 1079 aa19.47■□□□□ 0.71
CLN3-264ENST00000637985 LINC01553A4QN01 128 aa19.46■□□□□ 0.71
CLN3-264ENST00000637985 RAB11FIP3O75154 756 aa19.46■□□□□ 0.71
CLN3-264ENST00000637985 GJB5O95377 273 aa19.46■□□□□ 0.71
CLN3-264ENST00000637985 MYL3P08590 195 aa19.46■□□□□ 0.71
CLN3-264ENST00000637985 CPT1AP50416 773 aa19.46■□□□□ 0.71
CLN3-264ENST00000637985 DEFB103AP81534 67 aa19.46■□□□□ 0.71
CLN3-264ENST00000637985 LRRFIP1Q32MZ4 808 aaKnown RBP19.46■□□□□ 0.71
CLN3-264ENST00000637985 TKFCQ3LXA3 575 aa19.46■□□□□ 0.71
CLN3-264ENST00000637985 GMCL1P1Q8NEA9 526 aa19.46■□□□□ 0.71
CLN3-264ENST00000637985 TRERF1Q96PN7 1200 aa19.46■□□□□ 0.71
CLN3-264ENST00000637985 IL1RAPL2Q9NP60 686 aa19.46■□□□□ 0.71
CLN3-264ENST00000637985 ARPP21Q9UBL0 812 aaPredicted RBP19.46■□□□□ 0.71
CLN3-264ENST00000637985 C19orf67A6NJJ6 358 aa19.45■□□□□ 0.7
CLN3-264ENST00000637985 ST18O60284 1047 aa19.45■□□□□ 0.7
CLN3-264ENST00000637985 ZP2Q05996 745 aa19.45■□□□□ 0.7
CLN3-264ENST00000637985 PTPN11Q06124 597 aaPredicted RBP19.45■□□□□ 0.7
CLN3-264ENST00000637985 PPP1R13LQ8WUF5 828 aa19.45■□□□□ 0.7
CLN3-264ENST00000637985 MFSD14AQ96MC6 490 aa19.45■□□□□ 0.7
CLN3-264ENST00000637985 WDR11Q9BZH6 1224 aa19.45■□□□□ 0.7
CLN3-264ENST00000637985 MKNK2Q9HBH9 465 aa19.45■□□□□ 0.7
CLN3-264ENST00000637985 GPHNQ9NQX3 736 aaPredicted RBP19.45■□□□□ 0.7
CLN3-264ENST00000637985 CYP39A1Q9NYL5 469 aa19.45■□□□□ 0.7
CLN3-264ENST00000637985 H3BQ06 376 aaPredicted RBP19.44■□□□□ 0.7
CLN3-264ENST00000637985 CHGBP05060 677 aa19.44■□□□□ 0.7
CLN3-264ENST00000637985 BMP3P12645 472 aa19.44■□□□□ 0.7
CLN3-264ENST00000637985 UBE3CQ15386 1083 aa19.44■□□□□ 0.7
CLN3-264ENST00000637985 SBK1Q52WX2 424 aa19.44■□□□□ 0.7
CLN3-264ENST00000637985 PAG1Q9NWQ8 432 aa19.44■□□□□ 0.7
CLN3-264ENST00000637985 PRKAG3Q9UGI9 489 aa19.44■□□□□ 0.7
CLN3-264ENST00000637985 LCTP09848 1927 aa19.44■□□□□ 0.7
CLN3-264ENST00000637985 RBM47A0AV96 593 aaKnown RBP19.43■□□□□ 0.7
CLN3-264ENST00000637985 TMEM232C9JQI7 657 aa19.43■□□□□ 0.7
CLN3-264ENST00000637985 IFIT2P09913 472 aaKnown RBP19.43■□□□□ 0.7
CLN3-264ENST00000637985 ALAS1P13196 640 aa19.43■□□□□ 0.7
CLN3-264ENST00000637985 CEP95Q96GE4 821 aa19.43■□□□□ 0.7
CLN3-264ENST00000637985 PURBQ96QR8 312 aaKnown RBP19.43■□□□□ 0.7
CLN3-264ENST00000637985 DDX24Q9GZR7 859 aaKnown RBP eCLIP19.43■□□□□ 0.71e-8■■■■■ 50
CLN3-264ENST00000637985 MTMR4Q9NYA4 1195 aa19.43■□□□□ 0.7
CLN3-264ENST00000637985 KPNA6O60684 536 aa19.42■□□□□ 0.7
CLN3-264ENST00000637985 STAT2P52630 851 aa19.42■□□□□ 0.7
CLN3-264ENST00000637985 MUM1L1Q5H9M0 696 aa19.42■□□□□ 0.7
CLN3-264ENST00000637985 SLFN13Q68D06 897 aa19.42■□□□□ 0.7
CLN3-264ENST00000637985 CNKSR3Q6P9H4 555 aa19.42■□□□□ 0.7
CLN3-264ENST00000637985 STK11IPQ8N1F8 1099 aa19.42■□□□□ 0.7
CLN3-264ENST00000637985 LRRC47Q8N1G4 583 aaKnown RBP19.42■□□□□ 0.7
CLN3-264ENST00000637985 OR6J1Q8NGC5 347 aa19.42■□□□□ 0.7
CLN3-264ENST00000637985 CAGE1Q8TC20 777 aa19.42■□□□□ 0.7
CLN3-264ENST00000637985 AFAP1L1Q8TED9 768 aa19.42■□□□□ 0.7
CLN3-264ENST00000637985 C5orf42Q9H799 3197 aa19.42■□□□□ 0.7
CLN3-264ENST00000637985 ZDBF2Q9HCK1 2354 aa19.41■□□□□ 0.7
CLN3-264ENST00000637985 ABHD14A-ACY1A0A1B0GW23 586 aa19.41■□□□□ 0.7
CLN3-264ENST00000637985 TTLL1O95922 423 aa19.41■□□□□ 0.7
CLN3-264ENST00000637985 CXCL10P02778 98 aa19.41■□□□□ 0.7
CLN3-264ENST00000637985 COL19A1Q14993 1142 aa19.41■□□□□ 0.7
CLN3-264ENST00000637985 BRDTQ58F21 947 aaPredicted RBP19.41■□□□□ 0.7
CLN3-264ENST00000637985 C20orf194Q5TEA3 1177 aa19.41■□□□□ 0.7
CLN3-264ENST00000637985 FAM160B2Q86V87 743 aa19.41■□□□□ 0.7
CLN3-264ENST00000637985 ADHFE1Q8IWW8 467 aa19.41■□□□□ 0.7
CLN3-264ENST00000637985 PRSS33Q8NF86 280 aa19.41■□□□□ 0.7
CLN3-264ENST00000637985 CHURC1Q8WUH1 139 aa19.41■□□□□ 0.7
CLN3-264ENST00000637985 STAG1Q8WVM7 1258 aa19.41■□□□□ 0.7
CLN3-264ENST00000637985 MRPL38Q96DV4 380 aaKnown RBP19.41■□□□□ 0.7
CLN3-264ENST00000637985 CTAGE1Q96RT6 745 aa19.41■□□□□ 0.7
CLN3-264ENST00000637985 UPF3BQ9BZI7 483 aaKnown RBP19.41■□□□□ 0.7
CLN3-264ENST00000637985 PUS7LQ9H0K6 701 aaKnown RBP19.41■□□□□ 0.7
CLN3-264ENST00000637985 NOD1Q9Y239 953 aa19.41■□□□□ 0.7
CLN3-264ENST00000637985 FAM50BQ9Y247 325 aa19.41■□□□□ 0.7
CLN3-264ENST00000637985 TECTAO75443 2155 aa19.4■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms