RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 DKC1O60832 514 aaKnown RBP eCLIP6.27□□□□□ -1.411e-7■■■■■ 34.3
SCN1A-216ENST00000637968 FOSL1P15407 271 aa6.27□□□□□ -1.41
SCN1A-216ENST00000637968 RFC1P35251 1148 aaPredicted RBP6.27□□□□□ -1.41
SCN1A-216ENST00000637968 C2orf54Q08AI8 447 aa6.27□□□□□ -1.41
SCN1A-216ENST00000637968 ITGB3BPQ13352 177 aaPredicted RBP6.27□□□□□ -1.41
SCN1A-216ENST00000637968 R3HDM1Q15032 1099 aaKnown RBP6.27□□□□□ -1.41
SCN1A-216ENST00000637968 MAEAQ7L5Y9 396 aa6.27□□□□□ -1.41
SCN1A-216ENST00000637968 FAM228AQ86W67 206 aa6.27□□□□□ -1.41
SCN1A-216ENST00000637968 SCUBE1Q8IWY4 988 aa6.27□□□□□ -1.41
SCN1A-216ENST00000637968 SCAIQ8N9R8 606 aa6.27□□□□□ -1.41
SCN1A-216ENST00000637968 DQX1Q8TE96 717 aaKnown RBP6.27□□□□□ -1.41
SCN1A-216ENST00000637968 ELAC2Q9BQ52 826 aaKnown RBP6.27□□□□□ -1.41
SCN1A-216ENST00000637968 CCDC68Q9H2F9 335 aa6.27□□□□□ -1.41
SCN1A-216ENST00000637968 MRPL44Q9H9J2 332 aaKnown RBP6.27□□□□□ -1.41
SCN1A-216ENST00000637968 PIDD1Q9HB75 910 aa6.27□□□□□ -1.41
SCN1A-216ENST00000637968 SAP30BPQ9UHR5 308 aaKnown RBP6.27□□□□□ -1.41
SCN1A-216ENST00000637968 LEMD3Q9Y2U8 911 aa6.27□□□□□ -1.41
SCN1A-216ENST00000637968 PCF11O94913 1555 aaKnown RBP6.27□□□□□ -1.41
SCN1A-216ENST00000637968 NUTM2BA6NNL0 878 aaPredicted RBP6.27□□□□□ -1.41
SCN1A-216ENST00000637968 NUTM2EB1AL46 878 aaPredicted RBP6.27□□□□□ -1.41
SCN1A-216ENST00000637968 G3V3G9 751 aa6.27□□□□□ -1.41
SCN1A-216ENST00000637968 TIMM44O43615 452 aa6.27□□□□□ -1.41
SCN1A-216ENST00000637968 CYTH3O43739 400 aa6.27□□□□□ -1.41
SCN1A-216ENST00000637968 ATP1A3P13637 1013 aa6.27□□□□□ -1.41
SCN1A-216ENST00000637968 TMPOP42166 694 aaKnown RBP6.27□□□□□ -1.41
SCN1A-216ENST00000637968 BPIFB4P59827 614 aa6.27□□□□□ -1.41
SCN1A-216ENST00000637968 TMEM62Q0P6H9 643 aa6.27□□□□□ -1.41
SCN1A-216ENST00000637968 TEFQ10587 303 aa6.27□□□□□ -1.41
SCN1A-216ENST00000637968 EIF2B5Q13144 721 aaKnown RBP6.27□□□□□ -1.41
SCN1A-216ENST00000637968 DCAF8Q5TAQ9 597 aa6.27□□□□□ -1.41
SCN1A-216ENST00000637968 CCDC102BQ68D86 513 aa6.27□□□□□ -1.41
SCN1A-216ENST00000637968 DEPTORQ8TB45 409 aa6.27□□□□□ -1.41
SCN1A-216ENST00000637968 PGBD1Q96JS3 809 aa6.27□□□□□ -1.41
SCN1A-216ENST00000637968 ZIM3Q96PE6 472 aa6.27□□□□□ -1.41
SCN1A-216ENST00000637968 NACAP1Q9BZK3 213 aa6.27□□□□□ -1.41
SCN1A-216ENST00000637968 FHDC1Q9C0D6 1143 aaPredicted RBP6.27□□□□□ -1.41
SCN1A-216ENST00000637968 POLD4Q9HCU8 107 aa6.27□□□□□ -1.41
SCN1A-216ENST00000637968 PANK4Q9NVE7 773 aa6.27□□□□□ -1.41
SCN1A-216ENST00000637968 CHPF2Q9P2E5 772 aa6.27□□□□□ -1.41
SCN1A-216ENST00000637968 POLR3AO14802 1390 aaPredicted RBP6.27□□□□□ -1.41
SCN1A-216ENST00000637968 MACROD2A1Z1Q3 448 aa6.26□□□□□ -1.41
SCN1A-216ENST00000637968 HIP1O00291 1037 aa6.26□□□□□ -1.41
SCN1A-216ENST00000637968 EIF3FO00303 357 aaPredicted RBP6.26□□□□□ -1.41
SCN1A-216ENST00000637968 ENC1O14682 589 aa6.26□□□□□ -1.41
SCN1A-216ENST00000637968 MARCH6O60337 910 aa6.26□□□□□ -1.41
SCN1A-216ENST00000637968 MYL6BP14649 208 aa6.26□□□□□ -1.41
SCN1A-216ENST00000637968 ERCC5P28715 1186 aaPredicted RBP6.26□□□□□ -1.41
SCN1A-216ENST00000637968 TNNC1P63316 161 aa6.26□□□□□ -1.41
SCN1A-216ENST00000637968 DCTN2Q13561 401 aaKnown RBP6.26□□□□□ -1.41
SCN1A-216ENST00000637968 TRIM14Q14142 442 aa6.26□□□□□ -1.41
SCN1A-216ENST00000637968 ITIH4Q14624 930 aa6.26□□□□□ -1.41
SCN1A-216ENST00000637968 STKLD1Q8NE28 680 aa6.26□□□□□ -1.41
SCN1A-216ENST00000637968 VPS37AQ8NEZ2 397 aa6.26□□□□□ -1.41
SCN1A-216ENST00000637968 DDX54Q8TDD1 881 aaKnown RBP6.26□□□□□ -1.41
SCN1A-216ENST00000637968 CTNNAL1Q9UBT7 734 aa6.26□□□□□ -1.41
SCN1A-216ENST00000637968 ARHGAP10A1A4S6 786 aa6.26□□□□□ -1.41
SCN1A-216ENST00000637968 HTR3EA5X5Y0 456 aa6.26□□□□□ -1.41
SCN1A-216ENST00000637968 ATP5HO75947 161 aa6.26□□□□□ -1.41
SCN1A-216ENST00000637968 TSPAN9O75954 239 aa6.26□□□□□ -1.41
SCN1A-216ENST00000637968 CASP14P31944 242 aa6.26□□□□□ -1.41
SCN1A-216ENST00000637968 VHLP40337 213 aa6.26□□□□□ -1.41
SCN1A-216ENST00000637968 SERPINB8P50452 374 aa6.26□□□□□ -1.41
SCN1A-216ENST00000637968 KRT32Q14532 448 aa6.26□□□□□ -1.41
SCN1A-216ENST00000637968 KANK3Q6NY19 840 aa6.26□□□□□ -1.41
SCN1A-216ENST00000637968 DDHD1Q8NEL9 900 aa6.26□□□□□ -1.41
SCN1A-216ENST00000637968 NUF2Q9BZD4 464 aa6.26□□□□□ -1.41
SCN1A-216ENST00000637968 OSBPL7Q9BZF2 842 aa6.26□□□□□ -1.41
SCN1A-216ENST00000637968 PLCB1Q9NQ66 1216 aa6.26□□□□□ -1.41
SCN1A-216ENST00000637968 DDX25Q9UHL0 483 aaKnown RBP6.26□□□□□ -1.41
SCN1A-216ENST00000637968 CFAP43Q8NDM7 1665 aa6.26□□□□□ -1.41
SCN1A-216ENST00000637968 TMEM221A6NGB7 291 aa6.26□□□□□ -1.41
SCN1A-216ENST00000637968 MCF2LO15068 1137 aa6.26□□□□□ -1.41
SCN1A-216ENST00000637968 ALDH5A1P51649 535 aaPredicted RBP6.26□□□□□ -1.41
SCN1A-216ENST00000637968 NSUN2Q08J23 767 aaKnown RBP eCLIP6.26□□□□□ -1.41
SCN1A-216ENST00000637968 TUBA3CQ13748 450 aa6.26□□□□□ -1.41
SCN1A-216ENST00000637968 CNGA3Q16281 694 aa6.26□□□□□ -1.41
SCN1A-216ENST00000637968 NDUFA5Q16718 116 aa6.26□□□□□ -1.41
SCN1A-216ENST00000637968 TWISTNBQ3B726 338 aaPredicted RBP6.26□□□□□ -1.41
SCN1A-216ENST00000637968 UBE3BQ7Z3V4 1068 aa6.26□□□□□ -1.41
SCN1A-216ENST00000637968 CROCCP2Q86T23 111 aa6.26□□□□□ -1.41
SCN1A-216ENST00000637968 PATL1Q86TB9 770 aaKnown RBP6.26□□□□□ -1.41
SCN1A-216ENST00000637968 RAB3IL1Q8TBN0 382 aa6.26□□□□□ -1.41
SCN1A-216ENST00000637968 NEK9Q8TD19 979 aa6.26□□□□□ -1.41
SCN1A-216ENST00000637968 TTC1Q99614 292 aa6.26□□□□□ -1.41
SCN1A-216ENST00000637968 ARHGEF38Q9NXL2 777 aa6.26□□□□□ -1.41
SCN1A-216ENST00000637968 SCINQ9Y6U3 715 aa6.26□□□□□ -1.41
SCN1A-216ENST00000637968 ARHGEF11O15085 1522 aa6.26□□□□□ -1.41
SCN1A-216ENST00000637968 PHF20L1A8MW92 1017 aa6.26□□□□□ -1.41
SCN1A-216ENST00000637968 HGSO14964 777 aaPredicted RBP6.26□□□□□ -1.41
SCN1A-216ENST00000637968 CYP27B1O15528 508 aa6.26□□□□□ -1.41
SCN1A-216ENST00000637968 MTRF1O75570 445 aaKnown RBP6.26□□□□□ -1.41
SCN1A-216ENST00000637968 STAM2O75886 525 aa6.26□□□□□ -1.41
SCN1A-216ENST00000637968 HSPA1AP0DMV8 641 aaKnown RBP6.26□□□□□ -1.41
SCN1A-216ENST00000637968 HSPA1BP0DMV9 641 aaKnown RBP6.26□□□□□ -1.41
SCN1A-216ENST00000637968 CEBPAP49715 358 aaPredicted RBP6.26□□□□□ -1.41
SCN1A-216ENST00000637968 MAP3K7CLP57077 242 aa6.26□□□□□ -1.41
SCN1A-216ENST00000637968 TSHZ3Q63HK5 1081 aa6.26□□□□□ -1.41
SCN1A-216ENST00000637968 KRT27Q7Z3Y8 459 aa6.26□□□□□ -1.41
SCN1A-216ENST00000637968 LRRC49Q8IUZ0 686 aa6.26□□□□□ -1.41
SCN1A-216ENST00000637968 TTC5Q8N0Z6 440 aa6.26□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms