RNA–Protein interactions for RNA: ENST00000637110.1

CLN3-257, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 565 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-257ENST00000637110 MUM1L1Q5H9M0 696 aa13.59□□□□□ -0.23
CLN3-257ENST00000637110 GPATCH4Q5T3I0 446 aaKnown RBP13.59□□□□□ -0.23
CLN3-257ENST00000637110 ENAHQ8N8S7 591 aaPredicted RBP13.59□□□□□ -0.23
CLN3-257ENST00000637110 NUP133Q8WUM0 1156 aa13.59□□□□□ -0.23
CLN3-257ENST00000637110 NECAB3Q96P71 396 aaPredicted RBP13.59□□□□□ -0.23
CLN3-257ENST00000637110 RANBP17Q9H2T7 1088 aaKnown RBP13.59□□□□□ -0.23
CLN3-257ENST00000637110 A1CFQ9NQ94 594 aaKnown RBP13.59□□□□□ -0.23
CLN3-257ENST00000637110 CDKN2AIPQ9NXV6 580 aaPredicted RBP13.59□□□□□ -0.23
CLN3-257ENST00000637110 FAM184BQ9ULE4 1060 aa13.59□□□□□ -0.23
CLN3-257ENST00000637110 IFIT3O14879 490 aaKnown RBP13.58□□□□□ -0.24
CLN3-257ENST00000637110 SNAI1O95863 264 aaPredicted RBP13.58□□□□□ -0.24
CLN3-257ENST00000637110 PARP1P09874 1014 aaKnown RBP13.58□□□□□ -0.24
CLN3-257ENST00000637110 BMP1P13497 986 aa13.58□□□□□ -0.24
CLN3-257ENST00000637110 CNTN2Q02246 1040 aa13.58□□□□□ -0.24
CLN3-257ENST00000637110 FAAP100Q0VG06 881 aa13.58□□□□□ -0.24
CLN3-257ENST00000637110 MFSD5Q6N075 450 aa13.58□□□□□ -0.24
CLN3-257ENST00000637110 PSRC1Q6PGN9 363 aaPredicted RBP13.58□□□□□ -0.24
CLN3-257ENST00000637110 CYB5R4Q7L1T6 521 aa13.58□□□□□ -0.24
CLN3-257ENST00000637110 ARMCX2Q7L311 632 aa13.58□□□□□ -0.24
CLN3-257ENST00000637110 ZNF467Q7Z7K2 595 aaPredicted RBP13.58□□□□□ -0.24
CLN3-257ENST00000637110 NCOA7Q8NI08 942 aa13.58□□□□□ -0.24
CLN3-257ENST00000637110 MTIF3Q9H2K0 278 aaKnown RBP13.58□□□□□ -0.24
CLN3-257ENST00000637110 CPVLQ9H3G5 476 aa13.58□□□□□ -0.24
CLN3-257ENST00000637110 SLC28A3Q9HAS3 691 aa13.58□□□□□ -0.24
CLN3-257ENST00000637110 VAT1LQ9HCJ6 419 aa13.58□□□□□ -0.24
CLN3-257ENST00000637110 PNMA2Q9UL42 364 aa13.58□□□□□ -0.24
CLN3-257ENST00000637110 MROH7Q68CQ1 1323 aa13.58□□□□□ -0.24
CLN3-257ENST00000637110 MUC6Q6W4X9 2439 aa13.58□□□□□ -0.24
CLN3-257ENST00000637110 PTPDC1A2A3K4 754 aa13.57□□□□□ -0.24
CLN3-257ENST00000637110 ASB14A6NK59 587 aa13.57□□□□□ -0.24
CLN3-257ENST00000637110 GRXCR1A8MXD5 290 aa13.57□□□□□ -0.24
CLN3-257ENST00000637110 PGK1P00558 417 aa13.57□□□□□ -0.24
CLN3-257ENST00000637110 ZNF865P0CJ78 1059 aaPredicted RBP13.57□□□□□ -0.24
CLN3-257ENST00000637110 SNHG28P0DPA3 235 aa13.57□□□□□ -0.24
CLN3-257ENST00000637110 ACVR2BQ13705 512 aa13.57□□□□□ -0.24
CLN3-257ENST00000637110 SART3Q15020 963 aaKnown RBP13.57□□□□□ -0.24
CLN3-257ENST00000637110 USH1GQ495M9 461 aa13.57□□□□□ -0.24
CLN3-257ENST00000637110 ASPRV1Q53RT3 343 aa13.57□□□□□ -0.24
CLN3-257ENST00000637110 TMEM240Q5SV17 173 aa13.57□□□□□ -0.24
CLN3-257ENST00000637110 CASC1Q6TDU7 716 aa13.57□□□□□ -0.24
CLN3-257ENST00000637110 MAMDC4Q6UXC1 1216 aa13.57□□□□□ -0.24
CLN3-257ENST00000637110 NOL8Q76FK4 1167 aaKnown RBP13.57□□□□□ -0.24
CLN3-257ENST00000637110 CCDC144CPQ8IYA2 1237 aa13.57□□□□□ -0.24
CLN3-257ENST00000637110 TMEM199Q8N511 208 aa13.57□□□□□ -0.24
CLN3-257ENST00000637110 ANKS1AQ92625 1134 aa13.57□□□□□ -0.24
CLN3-257ENST00000637110 TSEN34Q9BSV6 310 aaKnown RBP13.57□□□□□ -0.24
CLN3-257ENST00000637110 ABHD16BQ9H3Z7 469 aa13.57□□□□□ -0.24
CLN3-257ENST00000637110 ANO2Q9NQ90 1003 aa13.57□□□□□ -0.24
CLN3-257ENST00000637110 STARD7Q9NQZ5 370 aa13.57□□□□□ -0.24
CLN3-257ENST00000637110 RBM8AQ9Y5S9 174 aaKnown RBP13.57□□□□□ -0.24
CLN3-257ENST00000637110 SOWAHBA6NEL2 793 aa13.56□□□□□ -0.24
CLN3-257ENST00000637110 E7EWF7 191 aa13.56□□□□□ -0.24
CLN3-257ENST00000637110 CALML3P27482 149 aa13.56□□□□□ -0.24
CLN3-257ENST00000637110 BAATQ14032 418 aaPredicted RBP13.56□□□□□ -0.24
CLN3-257ENST00000637110 WTAPQ15007 396 aa13.56□□□□□ -0.24
CLN3-257ENST00000637110 CDC37Q16543 378 aaPredicted RBP13.56□□□□□ -0.24
CLN3-257ENST00000637110 RASIP1Q5U651 963 aa13.56□□□□□ -0.24
CLN3-257ENST00000637110 DHX30Q7L2E3 1194 aaKnown RBP eCLIP13.56□□□□□ -0.24
CLN3-257ENST00000637110 CHST3Q7LGC8 479 aa13.56□□□□□ -0.24
CLN3-257ENST00000637110 FAM133AQ8N9E0 248 aa13.56□□□□□ -0.24
CLN3-257ENST00000637110 HERVK_113Q902F9 699 aa13.56□□□□□ -0.24
CLN3-257ENST00000637110 MAP4K1Q92918 833 aa13.56□□□□□ -0.24
CLN3-257ENST00000637110 LENG1Q96BZ8 264 aaPredicted RBP13.56□□□□□ -0.24
CLN3-257ENST00000637110 ESYT1Q9BSJ8 1104 aa13.56□□□□□ -0.24
CLN3-257ENST00000637110 SPC25Q9HBM1 224 aa13.56□□□□□ -0.24
CLN3-257ENST00000637110 CYP39A1Q9NYL5 469 aa13.56□□□□□ -0.24
CLN3-257ENST00000637110 CHD9Q3L8U1 2897 aa13.55□□□□□ -0.24
CLN3-257ENST00000637110 GBF1Q92538 1859 aa13.55□□□□□ -0.24
CLN3-257ENST00000637110 MOXD2PA6NHM9 499 aa13.55□□□□□ -0.24
CLN3-257ENST00000637110 NFIBO00712 420 aa13.55□□□□□ -0.24
CLN3-257ENST00000637110 SKIV2LQ15477 1246 aaKnown RBP13.55□□□□□ -0.24
CLN3-257ENST00000637110 CCDC144BQ3MJ40 725 aa13.55□□□□□ -0.24
CLN3-257ENST00000637110 BMP2KLQ5H9B9 411 aa13.55□□□□□ -0.24
CLN3-257ENST00000637110 RNF207Q6ZRF8 634 aa13.55□□□□□ -0.24
CLN3-257ENST00000637110 EEPD1Q7L9B9 569 aa13.55□□□□□ -0.24
CLN3-257ENST00000637110 ADGRF4Q8IZF3 695 aa13.55□□□□□ -0.24
CLN3-257ENST00000637110 MICALL1Q8N3F8 863 aa13.55□□□□□ -0.24
CLN3-257ENST00000637110 FGD4Q96M96 766 aa13.55□□□□□ -0.24
CLN3-257ENST00000637110 EPHX3Q9H6B9 360 aa13.55□□□□□ -0.24
CLN3-257ENST00000637110 ADD3Q9UEY8 706 aaKnown RBP13.55□□□□□ -0.24
CLN3-257ENST00000637110 TBX21Q9UL17 535 aa13.55□□□□□ -0.24
CLN3-257ENST00000637110 XIRP2A4UGR9 3374 aa13.55□□□□□ -0.24
CLN3-257ENST00000637110 ACLYP53396 1101 aa13.54□□□□□ -0.24
CLN3-257ENST00000637110 TFF2Q03403 129 aa13.54□□□□□ -0.24
CLN3-257ENST00000637110 SEC23AQ15436 765 aa13.54□□□□□ -0.24
CLN3-257ENST00000637110 TMEM67Q5HYA8 995 aa13.54□□□□□ -0.24
CLN3-257ENST00000637110 ALYREFQ86V81 257 aaKnown RBP13.54□□□□□ -0.24
CLN3-257ENST00000637110 VTI1AQ96AJ9 217 aa13.54□□□□□ -0.24
CLN3-257ENST00000637110 PURBQ96QR8 312 aaKnown RBP13.54□□□□□ -0.24
CLN3-257ENST00000637110 MPHOSPH6Q99547 160 aaKnown RBP13.54□□□□□ -0.24
CLN3-257ENST00000637110 NKX2-4Q9H2Z4 354 aa13.54□□□□□ -0.24
CLN3-257ENST00000637110 TAF6LQ9Y6J9 622 aa13.54□□□□□ -0.24
CLN3-257ENST00000637110 WDR19Q8NEZ3 1342 aa13.54□□□□□ -0.24
CLN3-257ENST00000637110 MCM3APO60318 1980 aa13.53□□□□□ -0.24
CLN3-257ENST00000637110 KLRF2D3W0D1 207 aa13.53□□□□□ -0.24
CLN3-257ENST00000637110 GPR37L1O60883 481 aa13.53□□□□□ -0.24
CLN3-257ENST00000637110 DUSP11O75319 330 aaKnown RBP13.53□□□□□ -0.24
CLN3-257ENST00000637110 CDC45O75419 566 aa13.53□□□□□ -0.24
CLN3-257ENST00000637110 C6orf222P0C671 652 aaPredicted RBP13.53□□□□□ -0.24
CLN3-257ENST00000637110 CSF2RAP15509 400 aa13.53□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms