RNA–Protein interactions for RNA: ENST00000637038.1

SCN1A-214, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,268 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-214ENST00000637038 SETDB2Q96T68 719 aa4.45□□□□□ -1.7
SCN1A-214ENST00000637038 SEC31BQ9NQW1 1179 aa4.45□□□□□ -1.7
SCN1A-214ENST00000637038 ABCF2Q9UG63 623 aa4.45□□□□□ -1.7
SCN1A-214ENST00000637038 ADGRG1Q9Y653 693 aa4.45□□□□□ -1.7
SCN1A-214ENST00000637038 ZNFX1Q9P2E3 1918 aaKnown RBP4.45□□□□□ -1.7
SCN1A-214ENST00000637038 UBR3Q6ZT12 1888 aa4.45□□□□□ -1.7
SCN1A-214ENST00000637038 LAD1O00515 517 aa4.45□□□□□ -1.7
SCN1A-214ENST00000637038 ACTN4O43707 911 aaKnown RBP4.45□□□□□ -1.7
SCN1A-214ENST00000637038 RGS20O76081 388 aa4.45□□□□□ -1.7
SCN1A-214ENST00000637038 SARSP49591 514 aaKnown RBP4.45□□□□□ -1.7
SCN1A-214ENST00000637038 COPB1P53618 953 aaKnown RBP4.45□□□□□ -1.7
SCN1A-214ENST00000637038 STX17P56962 302 aa4.45□□□□□ -1.7
SCN1A-214ENST00000637038 UBXN1Q04323 297 aa4.45□□□□□ -1.7
SCN1A-214ENST00000637038 SLC9C1Q4G0N8 1177 aa4.45□□□□□ -1.7
SCN1A-214ENST00000637038 HSP90AA4PQ58FG1 418 aa4.45□□□□□ -1.7
SCN1A-214ENST00000637038 SPECC1Q5M775 1068 aa4.45□□□□□ -1.7
SCN1A-214ENST00000637038 CIAPIN1Q6FI81 312 aa4.45□□□□□ -1.7
SCN1A-214ENST00000637038 PI16Q6UXB8 463 aa4.45□□□□□ -1.7
SCN1A-214ENST00000637038 TOGARAM2Q6ZUX3 1019 aa4.45□□□□□ -1.7
SCN1A-214ENST00000637038 RASGRP2Q7LDG7 609 aa4.45□□□□□ -1.7
SCN1A-214ENST00000637038 CNBD1Q8NA66 436 aa4.45□□□□□ -1.7
SCN1A-214ENST00000637038 OR8K1Q8NGG5 319 aa4.45□□□□□ -1.7
SCN1A-214ENST00000637038 ATXN2LQ8WWM7 1075 aaKnown RBP4.45□□□□□ -1.7
SCN1A-214ENST00000637038 KAT14Q9H8E8 782 aa4.45□□□□□ -1.7
SCN1A-214ENST00000637038 GJB4Q9NTQ9 266 aa4.45□□□□□ -1.7
SCN1A-214ENST00000637038 TCP11L1Q9NUJ3 509 aa4.45□□□□□ -1.7
SCN1A-214ENST00000637038 LIMA1Q9UHB6 759 aaKnown RBP4.45□□□□□ -1.7
SCN1A-214ENST00000637038 PUF60Q9UHX1 559 aaKnown RBP4.45□□□□□ -1.7
SCN1A-214ENST00000637038 BTAF1O14981 1849 aa4.45□□□□□ -1.7
SCN1A-214ENST00000637038 MYO3BQ8WXR4 1341 aa4.45□□□□□ -1.7
SCN1A-214ENST00000637038 KCNJ18B7U540 433 aa4.45□□□□□ -1.7
SCN1A-214ENST00000637038 GPR25O00155 361 aa4.45□□□□□ -1.7
SCN1A-214ENST00000637038 KRT9P35527 623 aa4.45□□□□□ -1.7
SCN1A-214ENST00000637038 RBL2Q08999 1139 aa4.45□□□□□ -1.7
SCN1A-214ENST00000637038 TTLL12Q14166 644 aaPredicted RBP4.45□□□□□ -1.7
SCN1A-214ENST00000637038 KCNJ12Q14500 433 aa4.45□□□□□ -1.7
SCN1A-214ENST00000637038 MCM6Q14566 821 aa4.45□□□□□ -1.7
SCN1A-214ENST00000637038 ZSCAN26Q16670 478 aa4.45□□□□□ -1.7
SCN1A-214ENST00000637038 ZNF658Q5TYW1 1059 aaPredicted RBP4.45□□□□□ -1.7
SCN1A-214ENST00000637038 RSRC2Q7L4I2 434 aaKnown RBP4.45□□□□□ -1.7
SCN1A-214ENST00000637038 ANKRD18AQ8IVF6 992 aa4.45□□□□□ -1.7
SCN1A-214ENST00000637038 NELFBQ8WX92 580 aa4.45□□□□□ -1.7
SCN1A-214ENST00000637038 RUBCNQ92622 972 aa4.45□□□□□ -1.7
SCN1A-214ENST00000637038 RPGRQ92834 1020 aaKnown RBP4.45□□□□□ -1.7
SCN1A-214ENST00000637038 LZTS2Q9BRK4 669 aa4.45□□□□□ -1.7
SCN1A-214ENST00000637038 DESI2Q9BSY9 194 aa4.45□□□□□ -1.7
SCN1A-214ENST00000637038 RAB34Q9BZG1 259 aa4.45□□□□□ -1.7
SCN1A-214ENST00000637038 ZKSCAN7Q9P0L1 754 aaPredicted RBP4.45□□□□□ -1.7
SCN1A-214ENST00000637038 ANAPC4Q9UJX5 808 aa4.45□□□□□ -1.7
SCN1A-214ENST00000637038 PCDHB6Q9Y5E3 794 aa4.45□□□□□ -1.7
SCN1A-214ENST00000637038 V9GY48 417 aaPredicted RBP4.45□□□□□ -1.7
SCN1A-214ENST00000637038 ANKRD31Q8N7Z5 1873 aa4.45□□□□□ -1.7
SCN1A-214ENST00000637038 GSG1L2A8MUP6 293 aa4.44□□□□□ -1.7
SCN1A-214ENST00000637038 TACC1O75410 805 aa4.44□□□□□ -1.7
SCN1A-214ENST00000637038 DNM2P50570 870 aa4.44□□□□□ -1.7
SCN1A-214ENST00000637038 RASGRF1Q13972 1273 aa4.44□□□□□ -1.7
SCN1A-214ENST00000637038 ZNF174Q15697 407 aa4.44□□□□□ -1.7
SCN1A-214ENST00000637038 LRIT3Q3SXY7 679 aa4.44□□□□□ -1.7
SCN1A-214ENST00000637038 CCDC181Q5TID7 509 aa4.44□□□□□ -1.7
SCN1A-214ENST00000637038 DNAJC14Q6Y2X3 702 aaPredicted RBP4.44□□□□□ -1.7
SCN1A-214ENST00000637038 DTHD1Q6ZMT9 781 aa4.44□□□□□ -1.7
SCN1A-214ENST00000637038 SPATA20Q8TB22 786 aa4.44□□□□□ -1.7
SCN1A-214ENST00000637038 CDK5RAP3Q96JB5 506 aa4.44□□□□□ -1.7
SCN1A-214ENST00000637038 RASSF4Q9H2L5 321 aa4.44□□□□□ -1.7
SCN1A-214ENST00000637038 DEF6Q9H4E7 631 aa4.44□□□□□ -1.7
SCN1A-214ENST00000637038 SENP2Q9HC62 589 aa4.44□□□□□ -1.7
SCN1A-214ENST00000637038 SH3GLB2Q9NR46 395 aa4.44□□□□□ -1.7
SCN1A-214ENST00000637038 SAMSN1Q9NSI8 373 aaKnown RBP4.44□□□□□ -1.7
SCN1A-214ENST00000637038 EXOC1Q9NV70 894 aa4.44□□□□□ -1.7
SCN1A-214ENST00000637038 VPS18Q9P253 973 aa4.44□□□□□ -1.7
SCN1A-214ENST00000637038 ADD3Q9UEY8 706 aaKnown RBP4.44□□□□□ -1.7
SCN1A-214ENST00000637038 NARFQ9UHQ1 456 aa4.44□□□□□ -1.7
SCN1A-214ENST00000637038 MYO6Q9UM54 1294 aa4.44□□□□□ -1.7
SCN1A-214ENST00000637038 SPDYE2BA6NHP3 402 aa4.44□□□□□ -1.7
SCN1A-214ENST00000637038 SEC31AO94979 1220 aaKnown RBP4.44□□□□□ -1.7
SCN1A-214ENST00000637038 SLC10A3P09131 477 aa4.44□□□□□ -1.7
SCN1A-214ENST00000637038 SPDYE6P0CI01 402 aa4.44□□□□□ -1.7
SCN1A-214ENST00000637038 SCG2P13521 617 aa4.44□□□□□ -1.7
SCN1A-214ENST00000637038 PAFAH1B1P43034 410 aa4.44□□□□□ -1.7
SCN1A-214ENST00000637038 MTIF2P46199 727 aaKnown RBP4.44□□□□□ -1.7
SCN1A-214ENST00000637038 PLA2G4AP47712 749 aa4.44□□□□□ -1.7
SCN1A-214ENST00000637038 GSTO1P78417 241 aa4.44□□□□□ -1.7
SCN1A-214ENST00000637038 FMR1Q06787 632 aaKnown RBP eCLIP4.44□□□□□ -1.7
SCN1A-214ENST00000637038 UBE4AQ14139 1066 aa4.44□□□□□ -1.7
SCN1A-214ENST00000637038 SUPT20HL1Q3ZLR7 823 aa4.44□□□□□ -1.7
SCN1A-214ENST00000637038 SPDYE2Q495Y8 402 aa4.44□□□□□ -1.7
SCN1A-214ENST00000637038 WDR24Q96S15 920 aa4.44□□□□□ -1.7
SCN1A-214ENST00000637038 TSG101Q99816 390 aa4.44□□□□□ -1.7
SCN1A-214ENST00000637038 ZKSCAN3Q9BRR0 538 aa4.44□□□□□ -1.7
SCN1A-214ENST00000637038 THAP9Q9H5L6 903 aa4.44□□□□□ -1.7
SCN1A-214ENST00000637038 ZSWIM4Q9H7M6 989 aa4.44□□□□□ -1.7
SCN1A-214ENST00000637038 VPS54Q9P1Q0 977 aa4.44□□□□□ -1.7
SCN1A-214ENST00000637038 ARPP21Q9UBL0 812 aaPredicted RBP4.44□□□□□ -1.7
SCN1A-214ENST00000637038 A0A1W2PQC6 194 aa4.44□□□□□ -1.7
SCN1A-214ENST00000637038 SOWAHDA6NJG2 315 aa4.44□□□□□ -1.7
SCN1A-214ENST00000637038 TSPY2A6NKD2 308 aa4.44□□□□□ -1.7
SCN1A-214ENST00000637038 UBE2Q2LH0YL09 131 aa4.44□□□□□ -1.7
SCN1A-214ENST00000637038 OPA1O60313 960 aa4.44□□□□□ -1.7
SCN1A-214ENST00000637038 RPN1P04843 607 aaKnown RBP4.44□□□□□ -1.7
SCN1A-214ENST00000637038 SERPINB2P05120 415 aa4.44□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms