RNA–Protein interactions for RNA: ENST00000625244.2

SNX1-214, Transcript of sorting nexin 1, humanhuman

TSL 5 BASIC

Gene SNX1, Length 324 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-214ENST00000625244 ATP8A2Q9NTI2 1148 aa16.69■□□□□ 0.26
SNX1-214ENST00000625244 FAM86C1Q9NVL1 165 aa16.69■□□□□ 0.26
SNX1-214ENST00000625244 TNNQ9UQP3 1299 aa16.69■□□□□ 0.26
SNX1-214ENST00000625244 COG6Q9Y2V7 657 aa16.69■□□□□ 0.26
SNX1-214ENST00000625244 TANC1Q9C0D5 1861 aa16.69■□□□□ 0.26
SNX1-214ENST00000625244 BFSP2Q13515 415 aa16.68■□□□□ 0.26
SNX1-214ENST00000625244 DUSP28Q4G0W2 176 aa16.68■□□□□ 0.26
SNX1-214ENST00000625244 EP400NLQ6ZTU2 488 aa16.68■□□□□ 0.26
SNX1-214ENST00000625244 FBXO22Q8NEZ5 403 aa16.68■□□□□ 0.26
SNX1-214ENST00000625244 PABPC5Q96DU9 382 aaKnown RBP16.68■□□□□ 0.26
SNX1-214ENST00000625244 MRPL38Q96DV4 380 aaKnown RBP16.68■□□□□ 0.26
SNX1-214ENST00000625244 MTG1Q9BT17 334 aaPredicted RBP16.68■□□□□ 0.26
SNX1-214ENST00000625244 FAM50BQ9Y247 325 aa16.68■□□□□ 0.26
SNX1-214ENST00000625244 NOP58Q9Y2X3 529 aaKnown RBP16.68■□□□□ 0.26
SNX1-214ENST00000625244 ATP8B2P98198 1209 aa16.67■□□□□ 0.26
SNX1-214ENST00000625244 TTF1Q15361 905 aaPredicted RBP16.67■□□□□ 0.26
SNX1-214ENST00000625244 FAM117BQ6P1L5 589 aa16.67■□□□□ 0.26
SNX1-214ENST00000625244 NFRKBQ6P4R8 1299 aa16.67■□□□□ 0.26
SNX1-214ENST00000625244 BMP8AQ7Z5Y6 402 aa16.67■□□□□ 0.26
SNX1-214ENST00000625244 RNF146Q9NTX7 359 aa16.67■□□□□ 0.26
SNX1-214ENST00000625244 NYAP2Q9P242 653 aa16.67■□□□□ 0.26
SNX1-214ENST00000625244 FEM1BQ9UK73 627 aa16.67■□□□□ 0.26
SNX1-214ENST00000625244 BAZ2AQ9UIF9 1905 aaKnown RBP16.66■□□□□ 0.26
SNX1-214ENST00000625244 SIP14410 1827 aa16.66■□□□□ 0.26
SNX1-214ENST00000625244 SCN10AQ9Y5Y9 1956 aa16.66■□□□□ 0.26
SNX1-214ENST00000625244 MBD4O95243 580 aa16.66■□□□□ 0.26
SNX1-214ENST00000625244 COL19A1Q14993 1142 aa16.66■□□□□ 0.26
SNX1-214ENST00000625244 LRRFIP1Q32MZ4 808 aaKnown RBP16.66■□□□□ 0.26
SNX1-214ENST00000625244 TCEAL5Q5H9L2 206 aa16.66■□□□□ 0.26
SNX1-214ENST00000625244 RNF135Q8IUD6 432 aa16.66■□□□□ 0.26
SNX1-214ENST00000625244 TRMT2AQ8IZ69 625 aaKnown RBP16.66■□□□□ 0.26
SNX1-214ENST00000625244 BANK1Q8NDB2 785 aa16.66■□□□□ 0.26
SNX1-214ENST00000625244 EDAQ92838 391 aa16.66■□□□□ 0.26
SNX1-214ENST00000625244 PURBQ96QR8 312 aaKnown RBP16.66■□□□□ 0.26
SNX1-214ENST00000625244 ALG13Q9NP73 1137 aaKnown RBP16.66■□□□□ 0.26
SNX1-214ENST00000625244 VTA1Q9NP79 307 aa16.66■□□□□ 0.26
SNX1-214ENST00000625244 GPHNQ9NQX3 736 aaPredicted RBP16.66■□□□□ 0.26
SNX1-214ENST00000625244 MYO7AQ13402 2215 aa16.66■□□□□ 0.26
SNX1-214ENST00000625244 CT47B1P0C2W7 299 aaPredicted RBP16.65■□□□□ 0.26
SNX1-214ENST00000625244 CPT1AP50416 773 aa16.65■□□□□ 0.26
SNX1-214ENST00000625244 RARSP54136 660 aaKnown RBP16.65■□□□□ 0.26
SNX1-214ENST00000625244 PTPROQ16827 1216 aa16.65■□□□□ 0.26
SNX1-214ENST00000625244 CNKSR3Q6P9H4 555 aa16.65■□□□□ 0.26
SNX1-214ENST00000625244 AMOTL1Q8IY63 956 aa16.65■□□□□ 0.26
SNX1-214ENST00000625244 PBXIP1Q96AQ6 731 aa16.65■□□□□ 0.26
SNX1-214ENST00000625244 CTAGE1Q96RT6 745 aa16.65■□□□□ 0.26
SNX1-214ENST00000625244 CRBNQ96SW2 442 aa16.65■□□□□ 0.26
SNX1-214ENST00000625244 PRRX2Q99811 253 aa16.65■□□□□ 0.26
SNX1-214ENST00000625244 WDR11Q9BZH6 1224 aa16.65■□□□□ 0.26
SNX1-214ENST00000625244 CLIP2Q9UDT6 1046 aa16.65■□□□□ 0.26
SNX1-214ENST00000625244 CTNNA3Q9UI47 895 aa16.65■□□□□ 0.26
SNX1-214ENST00000625244 NOD1Q9Y239 953 aa16.65■□□□□ 0.26
SNX1-214ENST00000625244 DNAH14Q0VDD8 3507 aa16.64■□□□□ 0.25
SNX1-214ENST00000625244 TMEM221A6NGB7 291 aa16.64■□□□□ 0.25
SNX1-214ENST00000625244 M0R296 226 aa16.64■□□□□ 0.25
SNX1-214ENST00000625244 GOLIM4O00461 696 aa16.64■□□□□ 0.25
SNX1-214ENST00000625244 NBNO60934 754 aa16.64■□□□□ 0.25
SNX1-214ENST00000625244 CXCL10P02778 98 aa16.64■□□□□ 0.25
SNX1-214ENST00000625244 LTBRP36941 435 aa16.64■□□□□ 0.25
SNX1-214ENST00000625244 TIGD5Q53EQ6 642 aa16.64■□□□□ 0.25
SNX1-214ENST00000625244 CTR9Q6PD62 1173 aa16.64■□□□□ 0.25
SNX1-214ENST00000625244 AACSQ86V21 672 aa16.64■□□□□ 0.25
SNX1-214ENST00000625244 OR6J1Q8NGC5 347 aa16.64■□□□□ 0.25
SNX1-214ENST00000625244 MORC4Q8TE76 937 aa16.64■□□□□ 0.25
SNX1-214ENST00000625244 AFAP1L1Q8TED9 768 aa16.64■□□□□ 0.25
SNX1-214ENST00000625244 TRERF1Q96PN7 1200 aa16.64■□□□□ 0.25
SNX1-214ENST00000625244 CLDND1Q9NY35 253 aa16.64■□□□□ 0.25
SNX1-214ENST00000625244 TRIP12Q14669 1992 aaPredicted RBP16.64■□□□□ 0.25
SNX1-214ENST00000625244 FAM186AA6NE01 2351 aa16.63■□□□□ 0.25
SNX1-214ENST00000625244 GREB1LQ9C091 1923 aaPredicted RBP16.63■□□□□ 0.25
SNX1-214ENST00000625244 TRIM27P14373 513 aa16.63■□□□□ 0.25
SNX1-214ENST00000625244 RASA1P20936 1047 aa16.63■□□□□ 0.25
SNX1-214ENST00000625244 PTPN11Q06124 597 aaPredicted RBP16.63■□□□□ 0.25
SNX1-214ENST00000625244 SMAD2Q15796 467 aaKnown RBP16.63■□□□□ 0.25
SNX1-214ENST00000625244 CLUL1Q15846 466 aa16.63■□□□□ 0.25
SNX1-214ENST00000625244 PTGISQ16647 500 aa16.63■□□□□ 0.25
SNX1-214ENST00000625244 EPC2Q52LR7 807 aa16.63■□□□□ 0.25
SNX1-214ENST00000625244 TRIM67Q6ZTA4 783 aa16.63■□□□□ 0.25
SNX1-214ENST00000625244 LRRC8DQ7L1W4 858 aa16.63■□□□□ 0.25
SNX1-214ENST00000625244 CAGE1Q8TC20 777 aa16.63■□□□□ 0.25
SNX1-214ENST00000625244 C1orf115Q9H7X2 142 aa16.63■□□□□ 0.25
SNX1-214ENST00000625244 CYP39A1Q9NYL5 469 aa16.63■□□□□ 0.25
SNX1-214ENST00000625244 ABHD14A-ACY1A0A1B0GW23 586 aa16.62■□□□□ 0.25
SNX1-214ENST00000625244 CHGBP05060 677 aa16.62■□□□□ 0.25
SNX1-214ENST00000625244 ALAS1P13196 640 aa16.62■□□□□ 0.25
SNX1-214ENST00000625244 SELPP16109 830 aa16.62■□□□□ 0.25
SNX1-214ENST00000625244 PKN1Q16512 942 aa16.62■□□□□ 0.25
SNX1-214ENST00000625244 MUM1L1Q5H9M0 696 aa16.62■□□□□ 0.25
SNX1-214ENST00000625244 STK11IPQ8N1F8 1099 aa16.62■□□□□ 0.25
SNX1-214ENST00000625244 DHX38Q92620 1227 aaKnown RBP16.62■□□□□ 0.25
SNX1-214ENST00000625244 DNAJC2Q99543 621 aaKnown RBP16.62■□□□□ 0.25
SNX1-214ENST00000625244 POP1Q99575 1024 aaKnown RBP16.62■□□□□ 0.25
SNX1-214ENST00000625244 INSL6Q9Y581 213 aa16.62■□□□□ 0.25
SNX1-214ENST00000625244 DMXL1Q9Y485 3027 aa16.62■□□□□ 0.25
SNX1-214ENST00000625244 ZBED9Q6R2W3 1325 aa16.62■□□□□ 0.25
SNX1-214ENST00000625244 IGKV6D-41A0A0C4DH26 115 aa16.61■□□□□ 0.25
SNX1-214ENST00000625244 CHMP4BP1P59074 171 aa16.61■□□□□ 0.25
SNX1-214ENST00000625244 DLX2Q07687 328 aaPredicted RBP16.61■□□□□ 0.25
SNX1-214ENST00000625244 TKFCQ3LXA3 575 aa16.61■□□□□ 0.25
SNX1-214ENST00000625244 LIN28BQ6ZN17 250 aaKnown RBP eCLIP16.61■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms