RNA–Protein interactions for RNA: ENST00000623461.3

VCL-206, Transcript of vinculin, humanhuman

TSL 1 (best)

Gene VCL, Length 7,995 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-206ENST00000623461 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP9.71□□□□□ -0.861e-10■■■■■ 87.1
VCL-206ENST00000623461 GNL3Q9BVP2 549 aaKnown RBP eCLIP9.71□□□□□ -0.86
VCL-206ENST00000623461 MRPL44Q9H9J2 332 aaKnown RBP9.71□□□□□ -0.86
VCL-206ENST00000623461 GCNT3O95395 438 aa9.71□□□□□ -0.86
VCL-206ENST00000623461 TCP11X2Q5H9J9 407 aa9.71□□□□□ -0.86
VCL-206ENST00000623461 MB21D1Q8N884 522 aa9.71□□□□□ -0.86
VCL-206ENST00000623461 EFHD1Q9BUP0 239 aa9.71□□□□□ -0.86
VCL-206ENST00000623461 PACSIN2Q9UNF0 486 aaPredicted RBP9.71□□□□□ -0.86
VCL-206ENST00000623461 ZDHHC9Q9Y397 364 aa9.71□□□□□ -0.86
VCL-206ENST00000623461 BTBD18B2RXH4 712 aa9.7□□□□□ -0.86
VCL-206ENST00000623461 EXOC3O60645 756 aa9.7□□□□□ -0.86
VCL-206ENST00000623461 FMNL1O95466 1100 aaPredicted RBP9.7□□□□□ -0.86
VCL-206ENST00000623461 CTDSPL2Q05D32 466 aa9.7□□□□□ -0.86
VCL-206ENST00000623461 SLC39A6Q13433 755 aa9.7□□□□□ -0.86
VCL-206ENST00000623461 WDR7Q9Y4E6 1490 aa9.7□□□□□ -0.86
VCL-206ENST00000623461 TTLL12Q14166 644 aaPredicted RBP9.7□□□□□ -0.86
VCL-206ENST00000623461 GNPTABQ3T906 1256 aa9.7□□□□□ -0.86
VCL-206ENST00000623461 ST7Q9NRC1 585 aa9.7□□□□□ -0.86
VCL-206ENST00000623461 USTQ9Y2C2 406 aa9.7□□□□□ -0.86
VCL-206ENST00000623461 TRPM2O94759 1503 aa9.7□□□□□ -0.86
VCL-206ENST00000623461 CLASP1Q7Z460 1538 aa9.7□□□□□ -0.86
VCL-206ENST00000623461 TTC36A6NLP5 189 aa9.7□□□□□ -0.86
VCL-206ENST00000623461 IRS4O14654 1257 aaPredicted RBP9.7□□□□□ -0.86
VCL-206ENST00000623461 ATP1A3P13637 1013 aa9.7□□□□□ -0.86
VCL-206ENST00000623461 GCKRQ14397 625 aa9.7□□□□□ -0.86
VCL-206ENST00000623461 PLS1Q14651 629 aa9.7□□□□□ -0.86
VCL-206ENST00000623461 CTAGE3PQ8IX95 158 aa9.7□□□□□ -0.86
VCL-206ENST00000623461 FANCBQ8NB91 859 aa9.7□□□□□ -0.86
VCL-206ENST00000623461 CALR3Q96L12 384 aaKnown RBP9.7□□□□□ -0.86
VCL-206ENST00000623461 SRPRBQ9Y5M8 271 aaKnown RBP9.7□□□□□ -0.86
VCL-206ENST00000623461 ABCC12Q96J65 1359 aa9.7□□□□□ -0.86
VCL-206ENST00000623461 CACNA1FO60840 1977 aa9.7□□□□□ -0.86
VCL-206ENST00000623461 SPAG7O75391 227 aa9.7□□□□□ -0.86
VCL-206ENST00000623461 ECEL1O95672 775 aa9.7□□□□□ -0.86
VCL-206ENST00000623461 SLC20A2Q08357 652 aa9.7□□□□□ -0.86
VCL-206ENST00000623461 BEND6Q5SZJ8 279 aaPredicted RBP9.7□□□□□ -0.86
VCL-206ENST00000623461 NUGGCQ68CJ6 796 aa9.7□□□□□ -0.86
VCL-206ENST00000623461 ANKRD13CQ8N6S4 541 aa9.7□□□□□ -0.86
VCL-206ENST00000623461 HNRNPLLQ8WVV9 542 aaKnown RBP9.7□□□□□ -0.86
VCL-206ENST00000623461 GRAMD1AQ96CP6 724 aa9.7□□□□□ -0.86
VCL-206ENST00000623461 AK8Q96MA6 479 aa9.7□□□□□ -0.86
VCL-206ENST00000623461 OSBPL1AQ9BXW6 950 aa9.7□□□□□ -0.86
VCL-206ENST00000623461 ABHD10Q9NUJ1 306 aa9.7□□□□□ -0.86
VCL-206ENST00000623461 CD109Q6YHK3 1445 aa9.7□□□□□ -0.86
VCL-206ENST00000623461 ARHGAP10A1A4S6 786 aa9.7□□□□□ -0.86
VCL-206ENST00000623461 PODXLO00592 558 aa9.7□□□□□ -0.86
VCL-206ENST00000623461 ADD1P35611 737 aaKnown RBP9.7□□□□□ -0.86
VCL-206ENST00000623461 CHMP6Q96FZ7 201 aa9.7□□□□□ -0.86
VCL-206ENST00000623461 LRGUKQ96M69 825 aa9.7□□□□□ -0.86
VCL-206ENST00000623461 XAB2Q9HCS7 855 aaKnown RBP9.7□□□□□ -0.86
VCL-206ENST00000623461 TARBP1Q13395 1621 aaKnown RBP9.7□□□□□ -0.86
VCL-206ENST00000623461 RESP18Q5W5W9 173 aa9.7□□□□□ -0.86
VCL-206ENST00000623461 ZNF804AQ7Z570 1209 aa9.7□□□□□ -0.86
VCL-206ENST00000623461 SERPINI1Q99574 410 aa9.7□□□□□ -0.86
VCL-206ENST00000623461 ECT2Q9H8V3 914 aa9.7□□□□□ -0.86
VCL-206ENST00000623461 PANK4Q9NVE7 773 aa9.7□□□□□ -0.86
VCL-206ENST00000623461 ADGRG1Q9Y653 693 aa9.7□□□□□ -0.86
VCL-206ENST00000623461 OR52Z1P0C646 297 aa9.69□□□□□ -0.86
VCL-206ENST00000623461 HNRNPH1P31943 449 aaKnown RBP9.69□□□□□ -0.86
VCL-206ENST00000623461 KIF11P52732 1056 aa9.69□□□□□ -0.86
VCL-206ENST00000623461 CCZ1BP86790 482 aa9.69□□□□□ -0.86
VCL-206ENST00000623461 CCZ1P86791 482 aaPredicted RBP9.69□□□□□ -0.86
VCL-206ENST00000623461 ARHGAP44Q17R89 818 aa9.69□□□□□ -0.86
VCL-206ENST00000623461 MORC4Q8TE76 937 aa9.69□□□□□ -0.86
VCL-206ENST00000623461 NRBF2Q96F24 287 aa9.69□□□□□ -0.86
VCL-206ENST00000623461 CXCR5P32302 372 aa9.69□□□□□ -0.86
VCL-206ENST00000623461 PTGDRQ13258 359 aa9.69□□□□□ -0.86
VCL-206ENST00000623461 CUL3Q13618 768 aa9.69□□□□□ -0.86
VCL-206ENST00000623461 GRAMD4Q6IC98 578 aa9.69□□□□□ -0.86
VCL-206ENST00000623461 TRMT1LQ7Z2T5 733 aaKnown RBP9.69□□□□□ -0.86
VCL-206ENST00000623461 UNC5CLQ8IV45 518 aa9.69□□□□□ -0.86
VCL-206ENST00000623461 PITPNM3Q9BZ71 974 aa9.69□□□□□ -0.86
VCL-206ENST00000623461 PPP1R12AO14974 1030 aaPredicted RBP9.69□□□□□ -0.86
VCL-206ENST00000623461 DDAH1O94760 285 aa9.69□□□□□ -0.86
VCL-206ENST00000623461 LARGE1O95461 756 aa9.69□□□□□ -0.86
VCL-206ENST00000623461 EIF4A3P38919 411 aaKnown RBP9.69□□□□□ -0.86
VCL-206ENST00000623461 PSMD7P51665 324 aa9.69□□□□□ -0.86
VCL-206ENST00000623461 NECTIN1Q15223 517 aa9.69□□□□□ -0.86
VCL-206ENST00000623461 FBXW10Q5XX13 1052 aa9.69□□□□□ -0.86
VCL-206ENST00000623461 MYCT1Q8N699 235 aa9.69□□□□□ -0.86
VCL-206ENST00000623461 EAF2Q96CJ1 260 aaPredicted RBP9.69□□□□□ -0.86
VCL-206ENST00000623461 PGBD1Q96JS3 809 aa9.69□□□□□ -0.86
VCL-206ENST00000623461 ZNF532Q9HCE3 1301 aa9.69□□□□□ -0.86
VCL-206ENST00000623461 TTC4O95801 387 aa9.69□□□□□ -0.86
VCL-206ENST00000623461 DR1Q01658 176 aa9.69□□□□□ -0.86
VCL-206ENST00000623461 NR1H3Q13133 447 aa9.69□□□□□ -0.86
VCL-206ENST00000623461 EXOC3L4Q17RC7 722 aa9.69□□□□□ -0.86
VCL-206ENST00000623461 ZNF473Q8WTR7 871 aaKnown RBP9.69□□□□□ -0.86
VCL-206ENST00000623461 ARHGEF35A5YM69 484 aa9.69□□□□□ -0.86
VCL-206ENST00000623461 HNRNPCL1O60812 293 aaKnown RBP9.69□□□□□ -0.86
VCL-206ENST00000623461 MKRN3Q13064 507 aaKnown RBP9.69□□□□□ -0.86
VCL-206ENST00000623461 PIP4K2CQ8TBX8 421 aa9.69□□□□□ -0.86
VCL-206ENST00000623461 IWS1Q96ST2 819 aa9.69□□□□□ -0.86
VCL-206ENST00000623461 ANKRD2Q9GZV1 360 aa9.69□□□□□ -0.86
VCL-206ENST00000623461 TBC1D7Q9P0N9 293 aa9.69□□□□□ -0.86
VCL-206ENST00000623461 WDR3Q9UNX4 943 aaKnown RBP eCLIP9.69□□□□□ -0.86
VCL-206ENST00000623461 GIPC1O14908 333 aa9.69□□□□□ -0.86
VCL-206ENST00000623461 PPP1R37O75864 691 aa9.69□□□□□ -0.86
VCL-206ENST00000623461 ARMCX5Q6P1M9 558 aa9.69□□□□□ -0.86
VCL-206ENST00000623461 GPIHBP1Q8IV16 184 aa9.69□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms