RNA–Protein interactions for RNA: ENST00000623219.3

LINC00643-205, long intergenic non-protein coding RNA 643, humanhuman

TSL 1 (best)

Gene LINC00643, Length 962 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-205ENST00000623219 MTA3Q9BTC8 594 aa17.26■□□□□ 0.35
LINC00643-205ENST00000623219 JMJD4Q9H9V9 463 aa17.26■□□□□ 0.35
LINC00643-205ENST00000623219 ANO2Q9NQ90 1003 aa17.26■□□□□ 0.35
LINC00643-205ENST00000623219 PRKAG2Q9UGJ0 569 aa17.26■□□□□ 0.35
LINC00643-205ENST00000623219 PALM3A6NDB9 673 aaPredicted RBP17.25■□□□□ 0.35
LINC00643-205ENST00000623219 KLRF2D3W0D1 207 aa17.25■□□□□ 0.35
LINC00643-205ENST00000623219 KCNA10Q16322 511 aa17.25■□□□□ 0.35
LINC00643-205ENST00000623219 TMEM67Q5HYA8 995 aa17.25■□□□□ 0.35
LINC00643-205ENST00000623219 TAPT1Q6NXT6 567 aa17.25■□□□□ 0.35
LINC00643-205ENST00000623219 MTMR8Q96EF0 704 aa17.25■□□□□ 0.35
LINC00643-205ENST00000623219 STARD7Q9NQZ5 370 aa17.25■□□□□ 0.35
LINC00643-205ENST00000623219 GNEQ9Y223 722 aaKnown RBP17.25■□□□□ 0.35
LINC00643-205ENST00000623219 DDX49Q9Y6V7 483 aaKnown RBP17.25■□□□□ 0.35
LINC00643-205ENST00000623219 SLC27A2O14975 620 aa17.24■□□□□ 0.35
LINC00643-205ENST00000623219 CDC45O75419 566 aa17.24■□□□□ 0.35
LINC00643-205ENST00000623219 EDNRBP24530 442 aa17.24■□□□□ 0.35
LINC00643-205ENST00000623219 TROAPQ12815 778 aa17.24■□□□□ 0.35
LINC00643-205ENST00000623219 NECTIN1Q15223 517 aa17.24■□□□□ 0.35
LINC00643-205ENST00000623219 IQSEC1Q6DN90 963 aa17.24■□□□□ 0.35
LINC00643-205ENST00000623219 EEPD1Q7L9B9 569 aa17.24■□□□□ 0.35
LINC00643-205ENST00000623219 CHST3Q7LGC8 479 aa17.24■□□□□ 0.35
LINC00643-205ENST00000623219 MCF2L2Q86YR7 1114 aa17.24■□□□□ 0.35
LINC00643-205ENST00000623219 IGDCC4Q8TDY8 1250 aa17.24■□□□□ 0.35
LINC00643-205ENST00000623219 SENP2Q9HC62 589 aa17.24■□□□□ 0.35
LINC00643-205ENST00000623219 MRPL11Q9Y3B7 192 aaKnown RBP17.24■□□□□ 0.35
LINC00643-205ENST00000623219 B4DLN1 442 aa17.23■□□□□ 0.35
LINC00643-205ENST00000623219 ZBTB5O15062 677 aa17.23■□□□□ 0.35
LINC00643-205ENST00000623219 CTAGE5O15320 804 aa17.23■□□□□ 0.35
LINC00643-205ENST00000623219 NEFLP07196 543 aa17.23■□□□□ 0.35
LINC00643-205ENST00000623219 ASGR1P07306 291 aa17.23■□□□□ 0.35
LINC00643-205ENST00000623219 SMPD1P17405 629 aa17.23■□□□□ 0.35
LINC00643-205ENST00000623219 MCM5P33992 734 aa17.23■□□□□ 0.35
LINC00643-205ENST00000623219 MRPL12P52815 198 aaKnown RBP17.23■□□□□ 0.35
LINC00643-205ENST00000623219 CREB3L3Q68CJ9 461 aa17.23■□□□□ 0.35
LINC00643-205ENST00000623219 NOL8Q76FK4 1167 aaKnown RBP17.23■□□□□ 0.35
LINC00643-205ENST00000623219 CATIPQ7Z7H3 387 aa17.23■□□□□ 0.35
LINC00643-205ENST00000623219 TMEM87BQ96K49 555 aa17.23■□□□□ 0.35
LINC00643-205ENST00000623219 GLT1D1Q96MS3 346 aa17.23■□□□□ 0.35
LINC00643-205ENST00000623219 LBHD1Q9BQE6 289 aaPredicted RBP17.23■□□□□ 0.35
LINC00643-205ENST00000623219 AMNQ9BXJ7 453 aa17.23■□□□□ 0.35
LINC00643-205ENST00000623219 LY9Q9HBG7 655 aa17.23■□□□□ 0.35
LINC00643-205ENST00000623219 VAT1LQ9HCJ6 419 aa17.23■□□□□ 0.35
LINC00643-205ENST00000623219 PDLIM7Q9NR12 457 aa17.23■□□□□ 0.35
LINC00643-205ENST00000623219 PDGFCQ9NRA1 345 aa17.23■□□□□ 0.35
LINC00643-205ENST00000623219 Q9Y3F1 56 aa17.23■□□□□ 0.35
LINC00643-205ENST00000623219 ELP1O95163 1332 aa17.22■□□□□ 0.35
LINC00643-205ENST00000623219 MROH7Q68CQ1 1323 aa17.22■□□□□ 0.35
LINC00643-205ENST00000623219 GBF1Q92538 1859 aa17.22■□□□□ 0.35
LINC00643-205ENST00000623219 PRC1O43663 620 aa17.22■□□□□ 0.35
LINC00643-205ENST00000623219 DDAH1O94760 285 aa17.22■□□□□ 0.35
LINC00643-205ENST00000623219 IRX5P78411 483 aaPredicted RBP17.22■□□□□ 0.35
LINC00643-205ENST00000623219 MDM2Q00987 491 aaPredicted RBP17.22■□□□□ 0.35
LINC00643-205ENST00000623219 PDE4DQ08499 809 aa17.22■□□□□ 0.35
LINC00643-205ENST00000623219 DUSP28Q4G0W2 176 aa17.22■□□□□ 0.35
LINC00643-205ENST00000623219 GNASQ5JWF2 1037 aa17.22■□□□□ 0.35
LINC00643-205ENST00000623219 RNF20Q5VTR2 975 aa17.22■□□□□ 0.35
LINC00643-205ENST00000623219 TDHQ8IZJ6 230 aa17.22■□□□□ 0.35
LINC00643-205ENST00000623219 MAP3K14Q99558 947 aa17.22■□□□□ 0.35
LINC00643-205ENST00000623219 UBE2OQ9C0C9 1292 aaKnown RBP17.22■□□□□ 0.35
LINC00643-205ENST00000623219 RIOX1Q9H6W3 641 aa17.22■□□□□ 0.35
LINC00643-205ENST00000623219 PRDM5Q9NQX1 630 aaPredicted RBP17.22■□□□□ 0.35
LINC00643-205ENST00000623219 RBM47A0AV96 593 aaKnown RBP17.21■□□□□ 0.35
LINC00643-205ENST00000623219 CLTBP09497 229 aa17.21■□□□□ 0.35
LINC00643-205ENST00000623219 GHRHRQ02643 423 aa17.21■□□□□ 0.35
LINC00643-205ENST00000623219 TLE2Q04725 743 aa17.21■□□□□ 0.35
LINC00643-205ENST00000623219 TRAF1Q13077 416 aa17.21■□□□□ 0.35
LINC00643-205ENST00000623219 FSCN1Q16658 493 aaKnown RBP17.21■□□□□ 0.35
LINC00643-205ENST00000623219 ANKRD33Q7Z3H0 272 aa17.21■□□□□ 0.35
LINC00643-205ENST00000623219 ZNF654Q8IZM8 581 aa17.21■□□□□ 0.35
LINC00643-205ENST00000623219 TOX2Q96NM4 488 aa17.21■□□□□ 0.35
LINC00643-205ENST00000623219 AP5M1Q9H0R1 490 aa17.21■□□□□ 0.35
LINC00643-205ENST00000623219 A0A0U1RQG5 324 aaPredicted RBP17.2■□□□□ 0.34
LINC00643-205ENST00000623219 SH2B2O14492 632 aaPredicted RBP17.2■□□□□ 0.34
LINC00643-205ENST00000623219 ZEB2O60315 1214 aa17.2■□□□□ 0.34
LINC00643-205ENST00000623219 PQBP1O60828 265 aaKnown RBP17.2■□□□□ 0.34
LINC00643-205ENST00000623219 PPP1R11O60927 126 aaPredicted RBP17.2■□□□□ 0.34
LINC00643-205ENST00000623219 HSD17B4P51659 736 aa17.2■□□□□ 0.34
LINC00643-205ENST00000623219 BEX3Q00994 111 aa17.2■□□□□ 0.34
LINC00643-205ENST00000623219 HOMER1Q86YM7 354 aa17.2■□□□□ 0.34
LINC00643-205ENST00000623219 TMTC2Q8N394 836 aa17.2■□□□□ 0.34
LINC00643-205ENST00000623219 SAMD3Q8N6K7 520 aa17.2■□□□□ 0.34
LINC00643-205ENST00000623219 CTCFLQ8NI51 663 aaPredicted RBP17.2■□□□□ 0.34
LINC00643-205ENST00000623219 SYTL5Q8TDW5 730 aaPredicted RBP17.2■□□□□ 0.34
LINC00643-205ENST00000623219 WDR11Q9BZH6 1224 aa17.2■□□□□ 0.34
LINC00643-205ENST00000623219 MAP3K20Q9NYL2 800 aaKnown RBP17.2■□□□□ 0.34
LINC00643-205ENST00000623219 TRIP12Q14669 1992 aaPredicted RBP17.19■□□□□ 0.34
LINC00643-205ENST00000623219 OPLAHO14841 1288 aa17.19■□□□□ 0.34
LINC00643-205ENST00000623219 NKRFO15226 690 aaKnown RBP eCLIP17.19■□□□□ 0.34
LINC00643-205ENST00000623219 CYTH3O43739 400 aa17.19■□□□□ 0.34
LINC00643-205ENST00000623219 CABYRO75952 493 aa17.19■□□□□ 0.34
LINC00643-205ENST00000623219 CFBP00751 764 aa17.19■□□□□ 0.34
LINC00643-205ENST00000623219 KIF5BP33176 963 aa17.19■□□□□ 0.34
LINC00643-205ENST00000623219 LIFRP42702 1097 aa17.19■□□□□ 0.34
LINC00643-205ENST00000623219 PPP2R5BQ15173 497 aa17.19■□□□□ 0.34
LINC00643-205ENST00000623219 SLC35G1Q2M3R5 365 aa17.19■□□□□ 0.34
LINC00643-205ENST00000623219 NSUN6Q8TEA1 469 aaKnown RBP17.19■□□□□ 0.34
LINC00643-205ENST00000623219 SCFD2Q8WU76 684 aa17.19■□□□□ 0.34
LINC00643-205ENST00000623219 TBC1D5Q92609 795 aa17.19■□□□□ 0.34
LINC00643-205ENST00000623219 IWS1Q96ST2 819 aa17.19■□□□□ 0.34
LINC00643-205ENST00000623219 COL20A1Q9P218 1284 aa17.19■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms