RNA–Protein interactions for RNA: ENST00000621131.4

VPS29-212, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,124 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-212ENST00000621131 VPS37DQ86XT2 251 aa8.2□□□□□ -1.1
VPS29-212ENST00000621131 CPNE8Q86YQ8 564 aa8.2□□□□□ -1.1
VPS29-212ENST00000621131 CAPN10Q9HC96 672 aa8.2□□□□□ -1.1
VPS29-212ENST00000621131 MRVI1Q9Y6F6 885 aa8.2□□□□□ -1.1
VPS29-212ENST00000621131 DCAF1Q9Y4B6 1507 aa8.19□□□□□ -1.1
VPS29-212ENST00000621131 F8W031 263 aaPredicted RBP8.19□□□□□ -1.1
VPS29-212ENST00000621131 BUB1BO60566 1050 aaPredicted RBP8.19□□□□□ -1.1
VPS29-212ENST00000621131 INHBBP09529 407 aa8.19□□□□□ -1.1
VPS29-212ENST00000621131 GLI4P10075 376 aa8.19□□□□□ -1.1
VPS29-212ENST00000621131 FBLN1P23142 703 aa8.19□□□□□ -1.1
VPS29-212ENST00000621131 IGFBP6P24592 240 aaPredicted RBP8.19□□□□□ -1.1
VPS29-212ENST00000621131 ZNF200P98182 395 aaPredicted RBP8.19□□□□□ -1.1
VPS29-212ENST00000621131 CNKSR3Q6P9H4 555 aa8.19□□□□□ -1.1
VPS29-212ENST00000621131 MARCH10Q8NA82 808 aaPredicted RBP8.19□□□□□ -1.1
VPS29-212ENST00000621131 COPS5Q92905 334 aa8.19□□□□□ -1.1
VPS29-212ENST00000621131 ZNF428Q96B54 188 aa8.19□□□□□ -1.1
VPS29-212ENST00000621131 MTA3Q9BTC8 594 aa8.19□□□□□ -1.1
VPS29-212ENST00000621131 FBLN5Q9UBX5 448 aa8.19□□□□□ -1.1
VPS29-212ENST00000621131 PLA2G2DQ9UNK4 145 aa8.19□□□□□ -1.1
VPS29-212ENST00000621131 ZC3H12DA2A288 527 aaKnown RBP8.18□□□□□ -1.1
VPS29-212ENST00000621131 KCNH1O95259 989 aa8.18□□□□□ -1.1
VPS29-212ENST00000621131 TCF3P15923 654 aa8.18□□□□□ -1.1
VPS29-212ENST00000621131 BMP7P18075 431 aa8.18□□□□□ -1.1
VPS29-212ENST00000621131 PAMP19021 973 aa8.18□□□□□ -1.1
VPS29-212ENST00000621131 AFF3P51826 1226 aaKnown RBP8.18□□□□□ -1.1
VPS29-212ENST00000621131 PRR5P85299 388 aa8.18□□□□□ -1.1
VPS29-212ENST00000621131 MRGPRX3Q96LB0 322 aa8.18□□□□□ -1.1
VPS29-212ENST00000621131 NPHP3-ACAD11A0A0J9YXS1 232 aa8.17□□□□□ -1.1
VPS29-212ENST00000621131 ETFBP38117 255 aa8.17□□□□□ -1.1
VPS29-212ENST00000621131 LILRA6Q6PI73 481 aa8.17□□□□□ -1.1
VPS29-212ENST00000621131 KCNC2Q96PR1 638 aa8.17□□□□□ -1.1
VPS29-212ENST00000621131 PARD6AQ9NPB6 346 aa8.17□□□□□ -1.1
VPS29-212ENST00000621131 GPRC5CQ9NQ84 441 aa8.17□□□□□ -1.1
VPS29-212ENST00000621131 RWDD3Q9Y3V2 267 aa8.17□□□□□ -1.1
VPS29-212ENST00000621131 TRBV23OR9-2A0A075B6M9 112 aa8.16□□□□□ -1.1
VPS29-212ENST00000621131 C7orf72A4D263 438 aa8.16□□□□□ -1.1
VPS29-212ENST00000621131 SSBP05455 408 aaKnown RBP eCLIP8.16□□□□□ -1.1
VPS29-212ENST00000621131 NAT2P11245 290 aa8.16□□□□□ -1.1
VPS29-212ENST00000621131 HOXA5P20719 270 aa8.16□□□□□ -1.1
VPS29-212ENST00000621131 CYP4F3Q08477 520 aa8.16□□□□□ -1.1
VPS29-212ENST00000621131 POMZP3Q6PJE2 187 aa8.16□□□□□ -1.1
VPS29-212ENST00000621131 C6orf15Q6UXA7 325 aaPredicted RBP8.16□□□□□ -1.1
VPS29-212ENST00000621131 TRIM59Q8IWR1 403 aa8.16□□□□□ -1.1
VPS29-212ENST00000621131 CRACR2BQ8N4Y2 399 aaPredicted RBP8.16□□□□□ -1.1
VPS29-212ENST00000621131 LZTR1Q8N653 840 aa8.16□□□□□ -1.1
VPS29-212ENST00000621131 C20orf173Q96LM9 149 aa8.16□□□□□ -1.1
VPS29-212ENST00000621131 PWWP2AQ96N64 755 aa8.16□□□□□ -1.1
VPS29-212ENST00000621131 MMP19Q99542 508 aa8.16□□□□□ -1.1
VPS29-212ENST00000621131 LGR4Q9BXB1 951 aa8.16□□□□□ -1.1
VPS29-212ENST00000621131 CYP26B1Q9NR63 512 aa8.16□□□□□ -1.1
VPS29-212ENST00000621131 ACTR10Q9NZ32 417 aa8.16□□□□□ -1.1
VPS29-212ENST00000621131 UNC13AQ9UPW8 1703 aa8.15□□□□□ -1.1
VPS29-212ENST00000621131 NOP56O00567 594 aaKnown RBP8.15□□□□□ -1.1
VPS29-212ENST00000621131 TRIM13O60858 407 aa8.15□□□□□ -1.1
VPS29-212ENST00000621131 ATF2P15336 505 aa8.15□□□□□ -1.1
VPS29-212ENST00000621131 SCRN1Q12765 414 aa8.15□□□□□ -1.1
VPS29-212ENST00000621131 TARBP2Q15633 366 aaKnown RBP8.15□□□□□ -1.1
VPS29-212ENST00000621131 VMACQ2NL98 169 aa8.15□□□□□ -1.1
VPS29-212ENST00000621131 TNNI3KQ59H18 835 aa8.15□□□□□ -1.1
VPS29-212ENST00000621131 GTF2IRD2BQ6EKJ0 949 aa8.15□□□□□ -1.1
VPS29-212ENST00000621131 GTF2IRD2Q86UP8 949 aa8.15□□□□□ -1.1
VPS29-212ENST00000621131 FAM178BQ8IXR5 827 aa8.15□□□□□ -1.1
VPS29-212ENST00000621131 TINF2Q9BSI4 451 aa8.15□□□□□ -1.1
VPS29-212ENST00000621131 CLEC1BQ9P126 229 aa8.15□□□□□ -1.1
VPS29-212ENST00000621131 GULP1Q9UBP9 304 aa8.15□□□□□ -1.1
VPS29-212ENST00000621131 PRKAG3Q9UGI9 489 aa8.15□□□□□ -1.1
VPS29-212ENST00000621131 PLS3P13797 630 aa8.14□□□□□ -1.11
VPS29-212ENST00000621131 PFKLP17858 780 aa8.14□□□□□ -1.11
VPS29-212ENST00000621131 GNL2Q13823 731 aaKnown RBP8.14□□□□□ -1.11
VPS29-212ENST00000621131 MBLAC2Q68D91 279 aa8.14□□□□□ -1.11
VPS29-212ENST00000621131 NKX2-4Q9H2Z4 354 aa8.14□□□□□ -1.11
VPS29-212ENST00000621131 ZCCHC4Q9H5U6 513 aa8.14□□□□□ -1.11
VPS29-212ENST00000621131 RXFP1Q9HBX9 757 aa8.14□□□□□ -1.11
VPS29-212ENST00000621131 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP8.14□□□□□ -1.11
VPS29-212ENST00000621131 NACADO15069 1562 aa8.14□□□□□ -1.11
VPS29-212ENST00000621131 CECR2Q9BXF3 1484 aa8.13□□□□□ -1.11
VPS29-212ENST00000621131 NPHS1O60500 1241 aa8.13□□□□□ -1.11
VPS29-212ENST00000621131 THBDP07204 575 aa8.13□□□□□ -1.11
VPS29-212ENST00000621131 FGRP09769 529 aa8.13□□□□□ -1.11
VPS29-212ENST00000621131 CAP1Q01518 475 aa8.13□□□□□ -1.11
VPS29-212ENST00000621131 TP53I13Q8NBR0 393 aaPredicted RBP8.13□□□□□ -1.11
VPS29-212ENST00000621131 NETO2Q8NC67 525 aa8.13□□□□□ -1.11
VPS29-212ENST00000621131 MICAL1Q8TDZ2 1067 aa8.13□□□□□ -1.11
VPS29-212ENST00000621131 DPF3Q92784 378 aa8.13□□□□□ -1.11
VPS29-212ENST00000621131 TSPAN17Q96FV3 270 aa8.13□□□□□ -1.11
VPS29-212ENST00000621131 BUD13Q9BRD0 619 aaKnown RBP eCLIP8.13□□□□□ -1.11
VPS29-212ENST00000621131 DBR1Q9UK59 544 aaKnown RBP8.13□□□□□ -1.11
VPS29-212ENST00000621131 BICRAQ9NZM4 1560 aa8.13□□□□□ -1.11
VPS29-212ENST00000621131 B2RBV5 119 aa8.12□□□□□ -1.11
VPS29-212ENST00000621131 ASGR2P07307 311 aa8.12□□□□□ -1.11
VPS29-212ENST00000621131 NCAM1P13591 858 aa8.12□□□□□ -1.11
VPS29-212ENST00000621131 LIMS1P48059 325 aa8.12□□□□□ -1.11
VPS29-212ENST00000621131 FOXO4P98177 505 aa8.12□□□□□ -1.11
VPS29-212ENST00000621131 LARP1BQ659C4 914 aaKnown RBP8.12□□□□□ -1.11
VPS29-212ENST00000621131 PLEKHO2Q8TD55 490 aa8.12□□□□□ -1.11
VPS29-212ENST00000621131 FRS2Q8WU20 508 aa8.12□□□□□ -1.11
VPS29-212ENST00000621131 RNF38Q9H0F5 515 aa8.12□□□□□ -1.11
VPS29-212ENST00000621131 ARNTLO00327 626 aa8.11□□□□□ -1.11
VPS29-212ENST00000621131 TBX1O43435 398 aa8.11□□□□□ -1.11
VPS29-212ENST00000621131 ITGAVP06756 1048 aa8.11□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms