RNA–Protein interactions for RNA: ENST00000615540.4

PDLIM5-222, Transcript of PDZ and LIM domain 5, humanhuman

TSL 1 (best) BASIC

Gene PDLIM5, Length 6,219 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-222ENST00000615540 CTTNQ14247 550 aaKnown RBP9.88□□□□□ -0.83
PDLIM5-222ENST00000615540 KRT31Q15323 416 aa9.88□□□□□ -0.83
PDLIM5-222ENST00000615540 GSTA5Q7RTV2 222 aa9.88□□□□□ -0.83
PDLIM5-222ENST00000615540 GTPBP4Q9BZE4 634 aaKnown RBP9.88□□□□□ -0.83
PDLIM5-222ENST00000615540 ATF5Q9Y2D1 282 aaPredicted RBP9.88□□□□□ -0.83
PDLIM5-222ENST00000615540 SFI1A8K8P3 1242 aa9.88□□□□□ -0.83
PDLIM5-222ENST00000615540 PTPREP23469 700 aa9.88□□□□□ -0.83
PDLIM5-222ENST00000615540 CHRNA5P30532 468 aa9.88□□□□□ -0.83
PDLIM5-222ENST00000615540 CCDC25Q86WR0 208 aa9.88□□□□□ -0.83
PDLIM5-222ENST00000615540 CCDC114Q96M63 670 aa9.88□□□□□ -0.83
PDLIM5-222ENST00000615540 SPTLC3Q9NUV7 552 aa9.88□□□□□ -0.83
PDLIM5-222ENST00000615540 FLOT1O75955 427 aa9.88□□□□□ -0.83
PDLIM5-222ENST00000615540 ABCB4P21439 1286 aa9.88□□□□□ -0.83
PDLIM5-222ENST00000615540 RASSF7Q02833 373 aa9.88□□□□□ -0.83
PDLIM5-222ENST00000615540 SMC1AQ14683 1233 aaKnown RBP9.88□□□□□ -0.83
PDLIM5-222ENST00000615540 GLT8D2Q9H1C3 349 aa9.88□□□□□ -0.83
PDLIM5-222ENST00000615540 DNAJC5Q9H3Z4 198 aa9.88□□□□□ -0.83
PDLIM5-222ENST00000615540 NFAT5O94916 1531 aa9.88□□□□□ -0.83
PDLIM5-222ENST00000615540 USP17L15C9J2P7 530 aa9.88□□□□□ -0.83
PDLIM5-222ENST00000615540 USP17L13C9JLJ4 530 aa9.88□□□□□ -0.83
PDLIM5-222ENST00000615540 USP17L11C9JVI0 530 aa9.88□□□□□ -0.83
PDLIM5-222ENST00000615540 USP17L18D6R9N7 530 aa9.88□□□□□ -0.83
PDLIM5-222ENST00000615540 USP17L22D6RA61 530 aa9.88□□□□□ -0.83
PDLIM5-222ENST00000615540 USP17L17D6RBQ6 530 aa9.88□□□□□ -0.83
PDLIM5-222ENST00000615540 USP17L19D6RCP7 530 aa9.88□□□□□ -0.83
PDLIM5-222ENST00000615540 USP17L20D6RJB6 530 aa9.88□□□□□ -0.83
PDLIM5-222ENST00000615540 USP17L24Q0WX57 530 aa9.88□□□□□ -0.83
PDLIM5-222ENST00000615540 USP17L6PQ6QN14 398 aa9.88□□□□□ -0.83
PDLIM5-222ENST00000615540 LMBR1Q8WVP7 490 aa9.88□□□□□ -0.83
PDLIM5-222ENST00000615540 MASTLQ96GX5 879 aa9.88□□□□□ -0.83
PDLIM5-222ENST00000615540 SELENOSQ9BQE4 189 aa9.88□□□□□ -0.83
PDLIM5-222ENST00000615540 PAGR1Q9BTK6 254 aa9.88□□□□□ -0.83
PDLIM5-222ENST00000615540 COA1Q9GZY4 146 aa9.88□□□□□ -0.83
PDLIM5-222ENST00000615540 TDRD3Q9H7E2 651 aaKnown RBP9.88□□□□□ -0.83
PDLIM5-222ENST00000615540 OAS2P29728 719 aaKnown RBP9.88□□□□□ -0.83
PDLIM5-222ENST00000615540 CETN2P41208 172 aa9.88□□□□□ -0.83
PDLIM5-222ENST00000615540 PRR5LQ6MZQ0 368 aa9.88□□□□□ -0.83
PDLIM5-222ENST00000615540 ADGRF4Q8IZF3 695 aa9.88□□□□□ -0.83
PDLIM5-222ENST00000615540 OR8K1Q8NGG5 319 aa9.88□□□□□ -0.83
PDLIM5-222ENST00000615540 PNMA6FA0A0J9YX94 578 aa9.87□□□□□ -0.83
PDLIM5-222ENST00000615540 NPHP3-ACAD11A0A0J9YXS1 232 aa9.87□□□□□ -0.83
PDLIM5-222ENST00000615540 C8orf74Q6P047 294 aa9.87□□□□□ -0.83
PDLIM5-222ENST00000615540 SGMS1Q86VZ5 419 aa9.87□□□□□ -0.83
PDLIM5-222ENST00000615540 FAM208AQ9UK61 1670 aaKnown RBP9.87□□□□□ -0.83
PDLIM5-222ENST00000615540 ZMYND10O75800 440 aa9.87□□□□□ -0.83
PDLIM5-222ENST00000615540 CAPN2P17655 700 aa9.87□□□□□ -0.83
PDLIM5-222ENST00000615540 VPS72Q15906 364 aa9.87□□□□□ -0.83
PDLIM5-222ENST00000615540 HPS3Q969F9 1004 aa9.87□□□□□ -0.83
PDLIM5-222ENST00000615540 MPHOSPH6Q99547 160 aaKnown RBP9.87□□□□□ -0.83
PDLIM5-222ENST00000615540 RABGAP1Q9Y3P9 1069 aa9.87□□□□□ -0.83
PDLIM5-222ENST00000615540 TNS2Q63HR2 1409 aa9.87□□□□□ -0.83
PDLIM5-222ENST00000615540 LAD1O00515 517 aa9.87□□□□□ -0.83
PDLIM5-222ENST00000615540 AKR1B1P15121 316 aa9.87□□□□□ -0.83
PDLIM5-222ENST00000615540 SMTNP53814 917 aa9.87□□□□□ -0.83
PDLIM5-222ENST00000615540 FMR1Q06787 632 aaKnown RBP eCLIP9.87□□□□□ -0.833e-9■■■■■ 33
PDLIM5-222ENST00000615540 PDLIM2Q96JY6 352 aa9.87□□□□□ -0.83
PDLIM5-222ENST00000615540 ZNF577Q9BSK1 485 aa9.87□□□□□ -0.83
PDLIM5-222ENST00000615540 PCIF1Q9H4Z3 704 aa9.87□□□□□ -0.83
PDLIM5-222ENST00000615540 SH3GLB2Q9NR46 395 aa9.87□□□□□ -0.83
PDLIM5-222ENST00000615540 GH2P01242 217 aa9.87□□□□□ -0.83
PDLIM5-222ENST00000615540 PRCPP42785 496 aa9.87□□□□□ -0.83
PDLIM5-222ENST00000615540 C2orf54Q08AI8 447 aa9.87□□□□□ -0.83
PDLIM5-222ENST00000615540 ARMCX5Q6P1M9 558 aa9.87□□□□□ -0.83
PDLIM5-222ENST00000615540 CNKSR1Q969H4 720 aa9.87□□□□□ -0.83
PDLIM5-222ENST00000615540 ZNF512BQ96KM6 892 aaPredicted RBP9.87□□□□□ -0.83
PDLIM5-222ENST00000615540 PAIP2Q9BPZ3 127 aaKnown RBP9.87□□□□□ -0.83
PDLIM5-222ENST00000615540 AFDNP55196 1824 aaKnown RBP9.87□□□□□ -0.83
PDLIM5-222ENST00000615540 TEX33O43247 280 aa9.87□□□□□ -0.83
PDLIM5-222ENST00000615540 CEP104O60308 925 aa9.87□□□□□ -0.83
PDLIM5-222ENST00000615540 MOCS3O95396 460 aa9.87□□□□□ -0.83
PDLIM5-222ENST00000615540 ERCC5P28715 1186 aaPredicted RBP9.87□□□□□ -0.83
PDLIM5-222ENST00000615540 HSPA1LP34931 641 aa9.87□□□□□ -0.83
PDLIM5-222ENST00000615540 DNM2P50570 870 aa9.87□□□□□ -0.83
PDLIM5-222ENST00000615540 FAM83BQ5T0W9 1011 aa9.87□□□□□ -0.83
PDLIM5-222ENST00000615540 LRCH2Q5VUJ6 765 aa9.87□□□□□ -0.83
PDLIM5-222ENST00000615540 TTBK2Q6IQ55 1244 aa9.87□□□□□ -0.83
PDLIM5-222ENST00000615540 ADAT2Q7Z6V5 191 aaKnown RBP9.87□□□□□ -0.83
PDLIM5-222ENST00000615540 KCNB2Q92953 911 aa9.87□□□□□ -0.83
PDLIM5-222ENST00000615540 FNBP1Q96RU3 617 aa9.87□□□□□ -0.83
PDLIM5-222ENST00000615540 PHF20Q9BVI0 1012 aa9.87□□□□□ -0.83
PDLIM5-222ENST00000615540 TEKT3Q9BXF9 490 aa9.87□□□□□ -0.83
PDLIM5-222ENST00000615540 MAP2K1Q02750 393 aaPredicted RBP9.86□□□□□ -0.83
PDLIM5-222ENST00000615540 NAA30Q147X3 362 aaPredicted RBP9.86□□□□□ -0.83
PDLIM5-222ENST00000615540 FAM26FQ5R3K3 315 aa9.86□□□□□ -0.83
PDLIM5-222ENST00000615540 ENOX1Q8TC92 643 aaKnown RBP9.86□□□□□ -0.83
PDLIM5-222ENST00000615540 AMNQ9BXJ7 453 aa9.86□□□□□ -0.83
PDLIM5-222ENST00000615540 DCCP43146 1447 aa9.86□□□□□ -0.83
PDLIM5-222ENST00000615540 DESP17661 470 aa9.86□□□□□ -0.83
PDLIM5-222ENST00000615540 FLAD1Q8NFF5 587 aa9.86□□□□□ -0.83
PDLIM5-222ENST00000615540 TBC1D16Q8TBP0 767 aa9.86□□□□□ -0.83
PDLIM5-222ENST00000615540 ZNF277Q9NRM2 450 aaPredicted RBP9.86□□□□□ -0.83
PDLIM5-222ENST00000615540 RASAL2Q9UJF2 1139 aa9.86□□□□□ -0.83
PDLIM5-222ENST00000615540 FLT1P17948 1338 aa9.86□□□□□ -0.83
PDLIM5-222ENST00000615540 ZEB2O60315 1214 aa9.86□□□□□ -0.83
PDLIM5-222ENST00000615540 TDP2O95551 362 aa9.86□□□□□ -0.83
PDLIM5-222ENST00000615540 MYZAPP0CAP1 466 aa9.86□□□□□ -0.83
PDLIM5-222ENST00000615540 XRCC5P13010 732 aaKnown RBP9.86□□□□□ -0.83
PDLIM5-222ENST00000615540 STAT2P52630 851 aa9.86□□□□□ -0.83
PDLIM5-222ENST00000615540 STRN3Q13033 797 aa9.86□□□□□ -0.83
PDLIM5-222ENST00000615540 SEPT2Q15019 361 aa9.86□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms