RNA–Protein interactions for RNA: ENST00000613856.4

SLIRP-212, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

APPRIS ALT1 TSL 2 BASIC

Gene SLIRP, Length 420 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-212ENST00000613856 LRRC26Q2I0M4 334 aa13.15□□□□□ -0.3
SLIRP-212ENST00000613856 WWC2Q6AWC2 1192 aa13.15□□□□□ -0.3
SLIRP-212ENST00000613856 PPP1R18Q6NYC8 613 aa13.15□□□□□ -0.3
SLIRP-212ENST00000613856 ANKLE1Q8NAG6 615 aa13.15□□□□□ -0.3
SLIRP-212ENST00000613856 CCDC148Q8NFR7 591 aa13.15□□□□□ -0.3
SLIRP-212ENST00000613856 CHURC1Q8WUH1 139 aa13.15□□□□□ -0.3
SLIRP-212ENST00000613856 PIGSQ96S52 555 aa13.15□□□□□ -0.3
SLIRP-212ENST00000613856 PHF20Q9BVI0 1012 aa13.15□□□□□ -0.3
SLIRP-212ENST00000613856 HMX1Q9NP08 348 aaPredicted RBP13.15□□□□□ -0.3
SLIRP-212ENST00000613856 BARHL2Q9NY43 387 aa13.15□□□□□ -0.3
SLIRP-212ENST00000613856 OGDHLQ9ULD0 1010 aa13.15□□□□□ -0.3
SLIRP-212ENST00000613856 ISY1Q9ULR0 285 aaKnown RBP13.15□□□□□ -0.3
SLIRP-212ENST00000613856 RPTORQ8N122 1335 aa13.14□□□□□ -0.31
SLIRP-212ENST00000613856 COL11A1P12107 1806 aaPredicted RBP13.14□□□□□ -0.31
SLIRP-212ENST00000613856 hCG_1642624A0A1W2PR95 340 aa13.14□□□□□ -0.31
SLIRP-212ENST00000613856 ESYT2A0FGR8 921 aa13.14□□□□□ -0.31
SLIRP-212ENST00000613856 STXBP3O00186 592 aa13.14□□□□□ -0.31
SLIRP-212ENST00000613856 CYP2B6P20813 491 aa13.14□□□□□ -0.31
SLIRP-212ENST00000613856 SLC16A2P36021 539 aa13.14□□□□□ -0.31
SLIRP-212ENST00000613856 FOSBP53539 338 aa13.14□□□□□ -0.31
SLIRP-212ENST00000613856 GUCY1B3Q02153 619 aa13.14□□□□□ -0.31
SLIRP-212ENST00000613856 GALNT17Q6IS24 598 aa13.14□□□□□ -0.31
SLIRP-212ENST00000613856 BRAPQ7Z569 592 aa13.14□□□□□ -0.31
SLIRP-212ENST00000613856 CCDC12Q8WUD4 166 aaPredicted RBP13.14□□□□□ -0.31
SLIRP-212ENST00000613856 GJB4Q9NTQ9 266 aa13.14□□□□□ -0.31
SLIRP-212ENST00000613856 TMOD4Q9NZQ9 345 aa13.14□□□□□ -0.31
SLIRP-212ENST00000613856 VPS54Q9P1Q0 977 aa13.14□□□□□ -0.31
SLIRP-212ENST00000613856 PRR12Q9ULL5 1215 aa13.14□□□□□ -0.31
SLIRP-212ENST00000613856 POTEB2H3BUK9 544 aa13.13□□□□□ -0.31
SLIRP-212ENST00000613856 PRKAR2AP13861 404 aaKnown RBP13.13□□□□□ -0.31
SLIRP-212ENST00000613856 U2AF2P26368 475 aaKnown RBP eCLIP13.13□□□□□ -0.311e-7■□□□□ 8
SLIRP-212ENST00000613856 CALML3P27482 149 aa13.13□□□□□ -0.31
SLIRP-212ENST00000613856 CCND3P30281 292 aaPredicted RBP13.13□□□□□ -0.31
SLIRP-212ENST00000613856 HMGCS2P54868 508 aa13.13□□□□□ -0.31
SLIRP-212ENST00000613856 TRAF1Q13077 416 aa13.13□□□□□ -0.31
SLIRP-212ENST00000613856 IKQ13123 557 aaPredicted RBP13.13□□□□□ -0.31
SLIRP-212ENST00000613856 SAFBQ15424 915 aaKnown RBP eCLIP13.13□□□□□ -0.31
SLIRP-212ENST00000613856 CDC37Q16543 378 aaPredicted RBP13.13□□□□□ -0.31
SLIRP-212ENST00000613856 CCL14Q16627 93 aa13.13□□□□□ -0.31
SLIRP-212ENST00000613856 QRICH1Q2TAL8 776 aa13.13□□□□□ -0.31
SLIRP-212ENST00000613856 MAP3K21Q5TCX8 1036 aa13.13□□□□□ -0.31
SLIRP-212ENST00000613856 HOMER1Q86YM7 354 aa13.13□□□□□ -0.31
SLIRP-212ENST00000613856 DAGLBQ8NCG7 672 aa13.13□□□□□ -0.31
SLIRP-212ENST00000613856 GPKOWQ92917 476 aaPredicted RBP eCLIP13.13□□□□□ -0.31
SLIRP-212ENST00000613856 GBP4Q96PP9 640 aa13.13□□□□□ -0.31
SLIRP-212ENST00000613856 ASCC2Q9H1I8 757 aaPredicted RBP13.13□□□□□ -0.31
SLIRP-212ENST00000613856 RANBP17Q9H2T7 1088 aaKnown RBP13.13□□□□□ -0.31
SLIRP-212ENST00000613856 FOXP1Q9H334 677 aaPredicted RBP13.13□□□□□ -0.31
SLIRP-212ENST00000613856 VAT1LQ9HCJ6 419 aa13.13□□□□□ -0.31
SLIRP-212ENST00000613856 TXNRD2Q9NNW7 524 aa13.13□□□□□ -0.31
SLIRP-212ENST00000613856 FDX1P10109 184 aa13.12□□□□□ -0.31
SLIRP-212ENST00000613856 COL6A1P12109 1028 aa13.12□□□□□ -0.31
SLIRP-212ENST00000613856 NPY5RQ15761 445 aa13.12□□□□□ -0.31
SLIRP-212ENST00000613856 FOXD4L5Q5VV16 416 aaPredicted RBP13.12□□□□□ -0.31
SLIRP-212ENST00000613856 TYW1BQ6NUM6 668 aa13.12□□□□□ -0.31
SLIRP-212ENST00000613856 POTEEQ6S8J3 1075 aa13.12□□□□□ -0.31
SLIRP-212ENST00000613856 HEATR3Q7Z4Q2 680 aa13.12□□□□□ -0.31
SLIRP-212ENST00000613856 FERMT3Q86UX7 667 aa13.12□□□□□ -0.31
SLIRP-212ENST00000613856 TEX2Q8IWB9 1127 aa13.12□□□□□ -0.31
SLIRP-212ENST00000613856 DIS3L2Q8IYB7 885 aaKnown RBP13.12□□□□□ -0.31
SLIRP-212ENST00000613856 PROCA1Q8NCQ7 364 aaPredicted RBP13.12□□□□□ -0.31
SLIRP-212ENST00000613856 FOXD4L4Q8WXT5 416 aaPredicted RBP13.12□□□□□ -0.31
SLIRP-212ENST00000613856 PIBF1Q8WXW3 757 aa13.12□□□□□ -0.31
SLIRP-212ENST00000613856 SLF1Q9BQI6 1058 aa13.12□□□□□ -0.31
SLIRP-212ENST00000613856 ZMYND12Q9H0C1 365 aa13.12□□□□□ -0.31
SLIRP-212ENST00000613856 RPAP3Q9H6T3 665 aaPredicted RBP13.12□□□□□ -0.31
SLIRP-212ENST00000613856 BRMS1Q9HCU9 246 aa13.12□□□□□ -0.31
SLIRP-212ENST00000613856 PPP1R9AQ9ULJ8 1098 aa13.12□□□□□ -0.31
SLIRP-212ENST00000613856 KCNJ14Q9UNX9 436 aa13.12□□□□□ -0.31
SLIRP-212ENST00000613856 MUC3AQ02505 3323 aa13.11□□□□□ -0.31
SLIRP-212ENST00000613856 KIF28PB7ZC32 967 aa13.11□□□□□ -0.31
SLIRP-212ENST00000613856 PPP1R11O60927 126 aaPredicted RBP13.11□□□□□ -0.31
SLIRP-212ENST00000613856 BAG4O95429 457 aaKnown RBP13.11□□□□□ -0.31
SLIRP-212ENST00000613856 KRT2P35908 639 aa13.11□□□□□ -0.31
SLIRP-212ENST00000613856 NAPAP54920 295 aa13.11□□□□□ -0.31
SLIRP-212ENST00000613856 MCTP1Q6DN14 999 aa13.11□□□□□ -0.31
SLIRP-212ENST00000613856 PRPF38AQ8NAV1 312 aaKnown RBP13.11□□□□□ -0.31
SLIRP-212ENST00000613856 AMNQ9BXJ7 453 aa13.11□□□□□ -0.31
SLIRP-212ENST00000613856 TANGO6Q9C0B7 1094 aa13.11□□□□□ -0.31
SLIRP-212ENST00000613856 SMCHD1A6NHR9 2005 aa13.11□□□□□ -0.31
SLIRP-212ENST00000613856 USP17L15C9J2P7 530 aa13.1□□□□□ -0.31
SLIRP-212ENST00000613856 USP17L13C9JLJ4 530 aa13.1□□□□□ -0.31
SLIRP-212ENST00000613856 USP17L11C9JVI0 530 aa13.1□□□□□ -0.31
SLIRP-212ENST00000613856 USP17L18D6R9N7 530 aa13.1□□□□□ -0.31
SLIRP-212ENST00000613856 USP17L22D6RA61 530 aa13.1□□□□□ -0.31
SLIRP-212ENST00000613856 USP17L17D6RBQ6 530 aa13.1□□□□□ -0.31
SLIRP-212ENST00000613856 USP17L19D6RCP7 530 aa13.1□□□□□ -0.31
SLIRP-212ENST00000613856 USP17L20D6RJB6 530 aa13.1□□□□□ -0.31
SLIRP-212ENST00000613856 GNA11P29992 359 aa13.1□□□□□ -0.31
SLIRP-212ENST00000613856 NLRP5P59047 1200 aa13.1□□□□□ -0.31
SLIRP-212ENST00000613856 CACNB2Q08289 660 aaPredicted RBP13.1□□□□□ -0.31
SLIRP-212ENST00000613856 USP17L24Q0WX57 530 aa13.1□□□□□ -0.31
SLIRP-212ENST00000613856 LHX8Q68G74 356 aa13.1□□□□□ -0.31
SLIRP-212ENST00000613856 ATL3Q6DD88 541 aa13.1□□□□□ -0.31
SLIRP-212ENST00000613856 CATSPERGQ6ZRH7 1159 aa13.1□□□□□ -0.31
SLIRP-212ENST00000613856 FBXO11Q86XK2 927 aa13.1□□□□□ -0.31
SLIRP-212ENST00000613856 NOSTRINQ8IVI9 506 aa13.1□□□□□ -0.31
SLIRP-212ENST00000613856 TNFRSF25Q93038 417 aa13.1□□□□□ -0.31
SLIRP-212ENST00000613856 KIFC2Q96AC6 838 aa13.1□□□□□ -0.31
SLIRP-212ENST00000613856 GLT8D2Q9H1C3 349 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms