RNA–Protein interactions for RNA: ENST00000613099.4

VPS13D-213, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS13D, Length 16,245 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-213ENST00000613099 TMEM165Q9HC07 324 aa5.39□□□□□ -1.55
VPS13D-213ENST00000613099 TIMMDC1Q9NPL8 285 aa5.39□□□□□ -1.55
VPS13D-213ENST00000613099 ECHDC1Q9NTX5 307 aa5.39□□□□□ -1.55
VPS13D-213ENST00000613099 GIMAP4Q9NUV9 329 aa5.39□□□□□ -1.55
VPS13D-213ENST00000613099 TMOD2Q9NZR1 351 aa5.39□□□□□ -1.55
VPS13D-213ENST00000613099 SRRM3A6NNA2 597 aaPredicted RBP5.39□□□□□ -1.55
VPS13D-213ENST00000613099 MSH2P43246 934 aa5.39□□□□□ -1.55
VPS13D-213ENST00000613099 PPP2R2AP63151 447 aa5.39□□□□□ -1.55
VPS13D-213ENST00000613099 TSC22D1Q15714 1073 aa5.39□□□□□ -1.55
VPS13D-213ENST00000613099 BEND6Q5SZJ8 279 aaPredicted RBP5.39□□□□□ -1.55
VPS13D-213ENST00000613099 TTLL7Q6ZT98 887 aa5.39□□□□□ -1.55
VPS13D-213ENST00000613099 VPS50Q96JG6 964 aa5.39□□□□□ -1.55
VPS13D-213ENST00000613099 EMC3Q9P0I2 261 aa5.39□□□□□ -1.55
VPS13D-213ENST00000613099 SAP30BPQ9UHR5 308 aaKnown RBP5.39□□□□□ -1.55
VPS13D-213ENST00000613099 AOX1Q06278 1338 aa5.39□□□□□ -1.55
VPS13D-213ENST00000613099 RBM5P52756 815 aaKnown RBP eCLIP5.39□□□□□ -1.55
VPS13D-213ENST00000613099 RCN2Q14257 317 aa5.39□□□□□ -1.55
VPS13D-213ENST00000613099 AFAP1L2Q8N4X5 818 aa5.39□□□□□ -1.55
VPS13D-213ENST00000613099 ATPIF1Q9UII2 106 aa5.39□□□□□ -1.55
VPS13D-213ENST00000613099 PASKQ96RG2 1323 aa5.39□□□□□ -1.55
VPS13D-213ENST00000613099 GYG2O15488 501 aa5.39□□□□□ -1.55
VPS13D-213ENST00000613099 MRPS15P82914 257 aaKnown RBP5.39□□□□□ -1.55
VPS13D-213ENST00000613099 CHMLP26374 656 aa5.39□□□□□ -1.55
VPS13D-213ENST00000613099 GSTT1P30711 240 aa5.39□□□□□ -1.55
VPS13D-213ENST00000613099 USP14P54578 494 aa5.39□□□□□ -1.55
VPS13D-213ENST00000613099 ADKP55263 362 aaKnown RBP5.39□□□□□ -1.55
VPS13D-213ENST00000613099 CSRNP2Q9H175 543 aa5.39□□□□□ -1.55
VPS13D-213ENST00000613099 KCNF1Q9H3M0 494 aa5.39□□□□□ -1.55
VPS13D-213ENST00000613099 EIF2AK3Q9NZJ5 1116 aaKnown RBP5.39□□□□□ -1.55
VPS13D-213ENST00000613099 ZMYND8Q9ULU4 1186 aaPredicted RBP5.39□□□□□ -1.55
VPS13D-213ENST00000613099 PACSIN2Q9UNF0 486 aaPredicted RBP5.39□□□□□ -1.55
VPS13D-213ENST00000613099 SART1O43290 800 aaKnown RBP5.38□□□□□ -1.55
VPS13D-213ENST00000613099 CCDC25Q86WR0 208 aa5.38□□□□□ -1.55
VPS13D-213ENST00000613099 MGARPQ8TDB4 240 aa5.38□□□□□ -1.55
VPS13D-213ENST00000613099 PBKQ96KB5 322 aa5.38□□□□□ -1.55
VPS13D-213ENST00000613099 CD209Q9NNX6 404 aa5.38□□□□□ -1.55
VPS13D-213ENST00000613099 DISC1Q9NRI5 854 aa5.38□□□□□ -1.55
VPS13D-213ENST00000613099 RABL2AQ9UBK7 228 aaPredicted RBP5.38□□□□□ -1.55
VPS13D-213ENST00000613099 ATP6V1G1O75348 118 aa5.38□□□□□ -1.55
VPS13D-213ENST00000613099 NUP107P57740 925 aa5.38□□□□□ -1.55
VPS13D-213ENST00000613099 LONP2Q86WA8 852 aa5.38□□□□□ -1.55
VPS13D-213ENST00000613099 PAWRQ96IZ0 340 aaKnown RBP5.38□□□□□ -1.55
VPS13D-213ENST00000613099 NFE2L3Q9Y4A8 694 aa5.38□□□□□ -1.55
VPS13D-213ENST00000613099 RIMS2Q9UQ26 1411 aa5.38□□□□□ -1.55
VPS13D-213ENST00000613099 KRT10P13645 584 aa5.38□□□□□ -1.55
VPS13D-213ENST00000613099 KRT13P13646 458 aa5.38□□□□□ -1.55
VPS13D-213ENST00000613099 FOSL1P15407 271 aa5.38□□□□□ -1.55
VPS13D-213ENST00000613099 DESI2Q9BSY9 194 aa5.38□□□□□ -1.55
VPS13D-213ENST00000613099 PLXNC1O60486 1568 aa5.38□□□□□ -1.55
VPS13D-213ENST00000613099 E9PMD0 336 aa5.38□□□□□ -1.55
VPS13D-213ENST00000613099 CMA1P23946 247 aa5.38□□□□□ -1.55
VPS13D-213ENST00000613099 ZCWPW2Q504Y3 356 aa5.38□□□□□ -1.55
VPS13D-213ENST00000613099 ADALQ6DHV7 355 aa5.38□□□□□ -1.55
VPS13D-213ENST00000613099 TMTC3Q6ZXV5 915 aa5.38□□□□□ -1.55
VPS13D-213ENST00000613099 ZNF554Q86TJ5 538 aa5.38□□□□□ -1.55
VPS13D-213ENST00000613099 THAP11Q96EK4 314 aa5.38□□□□□ -1.55
VPS13D-213ENST00000613099 TM6SF1Q9BZW5 370 aa5.38□□□□□ -1.55
VPS13D-213ENST00000613099 TMED5Q9Y3A6 229 aa5.38□□□□□ -1.55
VPS13D-213ENST00000613099 ATP6V0A2Q9Y487 856 aa5.38□□□□□ -1.55
VPS13D-213ENST00000613099 A0A1B0GW55 424 aa5.38□□□□□ -1.55
VPS13D-213ENST00000613099 CUTAO60888 179 aa5.38□□□□□ -1.55
VPS13D-213ENST00000613099 TRPA1O75762 1119 aa5.38□□□□□ -1.55
VPS13D-213ENST00000613099 DUX4L2P0CJ85 424 aa5.38□□□□□ -1.55
VPS13D-213ENST00000613099 DUX4L3P0CJ86 424 aa5.38□□□□□ -1.55
VPS13D-213ENST00000613099 DUX4L4P0CJ87 422 aa5.38□□□□□ -1.55
VPS13D-213ENST00000613099 DUX4L5P0CJ88 424 aa5.38□□□□□ -1.55
VPS13D-213ENST00000613099 DUX4L6P0CJ89 424 aa5.38□□□□□ -1.55
VPS13D-213ENST00000613099 DUX4L7P0CJ90 424 aa5.38□□□□□ -1.55
VPS13D-213ENST00000613099 SLF2Q8IX21 1173 aa5.38□□□□□ -1.55
VPS13D-213ENST00000613099 SPATA17Q96L03 361 aa5.38□□□□□ -1.55
VPS13D-213ENST00000613099 LRGUKQ96M69 825 aa5.38□□□□□ -1.55
VPS13D-213ENST00000613099 DUX4Q9UBX2 424 aa5.38□□□□□ -1.55
VPS13D-213ENST00000613099 LRCH1Q9Y2L9 728 aa5.38□□□□□ -1.55
VPS13D-213ENST00000613099 GOLGA8TH3BQL2 631 aa5.38□□□□□ -1.55
VPS13D-213ENST00000613099 GOLGA8HP0CJ92 632 aa5.38□□□□□ -1.55
VPS13D-213ENST00000613099 KRT76Q01546 638 aa5.38□□□□□ -1.55
VPS13D-213ENST00000613099 SERPINI1Q99574 410 aa5.38□□□□□ -1.55
VPS13D-213ENST00000613099 NR1I2O75469 434 aa5.38□□□□□ -1.55
VPS13D-213ENST00000613099 KRT14P02533 472 aa5.38□□□□□ -1.55
VPS13D-213ENST00000613099 TRPM8Q7Z2W7 1104 aa5.38□□□□□ -1.55
VPS13D-213ENST00000613099 ZNF473Q8WTR7 871 aaKnown RBP5.38□□□□□ -1.55
VPS13D-213ENST00000613099 ASCC2Q9H1I8 757 aaPredicted RBP5.38□□□□□ -1.55
VPS13D-213ENST00000613099 SLC4A7Q9Y6M7 1214 aa5.38□□□□□ -1.55
VPS13D-213ENST00000613099 COQ9O75208 318 aa5.38□□□□□ -1.55
VPS13D-213ENST00000613099 MMEP08473 750 aa5.38□□□□□ -1.55
VPS13D-213ENST00000613099 RAB15P59190 212 aa5.38□□□□□ -1.55
VPS13D-213ENST00000613099 VPS37BQ9H9H4 285 aa5.38□□□□□ -1.55
VPS13D-213ENST00000613099 TSPYL4Q9UJ04 414 aa5.38□□□□□ -1.55
VPS13D-213ENST00000613099 ADGRL3Q9HAR2 1447 aa5.38□□□□□ -1.55
VPS13D-213ENST00000613099 ARPC4-TTLL3A0A0A6YYG9 625 aa5.38□□□□□ -1.55
VPS13D-213ENST00000613099 USP5P45974 858 aa5.38□□□□□ -1.55
VPS13D-213ENST00000613099 PTGISQ16647 500 aa5.38□□□□□ -1.55
VPS13D-213ENST00000613099 ANO1Q5XXA6 986 aa5.38□□□□□ -1.55
VPS13D-213ENST00000613099 PATL1Q86TB9 770 aaKnown RBP5.38□□□□□ -1.55
VPS13D-213ENST00000613099 ANKRD13AQ8IZ07 590 aa5.38□□□□□ -1.55
VPS13D-213ENST00000613099 DACT3Q96B18 629 aaPredicted RBP5.38□□□□□ -1.55
VPS13D-213ENST00000613099 ETNK1Q9HBU6 452 aa5.38□□□□□ -1.55
VPS13D-213ENST00000613099 UNC13BO14795 1591 aa5.38□□□□□ -1.55
VPS13D-213ENST00000613099 TMPOP42166 694 aaKnown RBP5.38□□□□□ -1.55
VPS13D-213ENST00000613099 MMEL1Q495T6 779 aa5.38□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms