RNA–Protein interactions for RNA: ENST00000611712.4

LIG4-204, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 4 BASIC

Gene LIG4, Length 4,180 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-204ENST00000611712 PLS1Q14651 629 aa9.62□□□□□ -0.87
LIG4-204ENST00000611712 MAN2A1Q16706 1144 aa9.62□□□□□ -0.87
LIG4-204ENST00000611712 CFAP221Q4G0U5 840 aa9.62□□□□□ -0.87
LIG4-204ENST00000611712 VWA3BQ502W6 1294 aa9.62□□□□□ -0.87
LIG4-204ENST00000611712 ASPRV1Q53RT3 343 aa9.62□□□□□ -0.87
LIG4-204ENST00000611712 RNF187Q5TA31 235 aaPredicted RBP9.62□□□□□ -0.87
LIG4-204ENST00000611712 CCDC170Q8IYT3 715 aa9.62□□□□□ -0.87
LIG4-204ENST00000611712 LMBR1Q8WVP7 490 aa9.62□□□□□ -0.87
LIG4-204ENST00000611712 NDST4Q9H3R1 872 aa9.62□□□□□ -0.87
LIG4-204ENST00000611712 STK17AQ9UEE5 414 aa9.62□□□□□ -0.87
LIG4-204ENST00000611712 KIAA1024Q9UPX6 916 aa9.62□□□□□ -0.87
LIG4-204ENST00000611712 FAN1Q9Y2M0 1017 aa9.62□□□□□ -0.87
LIG4-204ENST00000611712 HYOU1Q9Y4L1 999 aa9.62□□□□□ -0.87
LIG4-204ENST00000611712 PLEKHG2Q9H7P9 1386 aa9.61□□□□□ -0.87
LIG4-204ENST00000611712 USP17L5A8MUK1 530 aa9.61□□□□□ -0.87
LIG4-204ENST00000611712 TCP1P17987 556 aaKnown RBP9.61□□□□□ -0.87
LIG4-204ENST00000611712 RASSF7Q02833 373 aa9.61□□□□□ -0.87
LIG4-204ENST00000611712 CASP8Q14790 479 aa9.61□□□□□ -0.87
LIG4-204ENST00000611712 SBK1Q52WX2 424 aa9.61□□□□□ -0.87
LIG4-204ENST00000611712 SMCR8Q8TEV9 937 aaPredicted RBP9.61□□□□□ -0.87
LIG4-204ENST00000611712 NUCKS1Q9H1E3 243 aaKnown RBP9.61□□□□□ -0.87
LIG4-204ENST00000611712 PCDHA6Q9UN73 950 aa9.61□□□□□ -0.87
LIG4-204ENST00000611712 PCDHA8Q9Y5H6 950 aa9.61□□□□□ -0.87
LIG4-204ENST00000611712 PCDHA1Q9Y5I3 950 aa9.61□□□□□ -0.87
LIG4-204ENST00000611712 LRRC37A3O60309 1634 aa9.61□□□□□ -0.87
LIG4-204ENST00000611712 WTIPA6NIX2 430 aaPredicted RBP9.61□□□□□ -0.87
LIG4-204ENST00000611712 EBAG9O00559 213 aa9.61□□□□□ -0.87
LIG4-204ENST00000611712 CCDC172P0C7W6 258 aa9.61□□□□□ -0.87
LIG4-204ENST00000611712 EIF4A3P38919 411 aaKnown RBP9.61□□□□□ -0.87
LIG4-204ENST00000611712 CACNB1Q02641 598 aaPredicted RBP9.61□□□□□ -0.87
LIG4-204ENST00000611712 TRAF1Q13077 416 aa9.61□□□□□ -0.87
LIG4-204ENST00000611712 UBE2SQ16763 222 aa9.61□□□□□ -0.87
LIG4-204ENST00000611712 PRR16Q569H4 304 aa9.61□□□□□ -0.87
LIG4-204ENST00000611712 KCTD1Q719H9 257 aa9.61□□□□□ -0.87
LIG4-204ENST00000611712 RASGRP2Q7LDG7 609 aa9.61□□□□□ -0.87
LIG4-204ENST00000611712 ADSSL1Q8N142 457 aa9.61□□□□□ -0.87
LIG4-204ENST00000611712 TEKT1Q969V4 418 aa9.61□□□□□ -0.87
LIG4-204ENST00000611712 CEP95Q96GE4 821 aa9.61□□□□□ -0.87
LIG4-204ENST00000611712 CCDC113Q9H0I3 377 aa9.61□□□□□ -0.87
LIG4-204ENST00000611712 TMEM60Q9H2L4 133 aa9.61□□□□□ -0.87
LIG4-204ENST00000611712 SERPINB13Q9UIV8 391 aa9.61□□□□□ -0.87
LIG4-204ENST00000611712 KDM3AQ9Y4C1 1321 aa9.61□□□□□ -0.87
LIG4-204ENST00000611712 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP9.61□□□□□ -0.87
LIG4-204ENST00000611712 CXCR5P32302 372 aa9.61□□□□□ -0.87
LIG4-204ENST00000611712 SARSP49591 514 aaKnown RBP9.61□□□□□ -0.87
LIG4-204ENST00000611712 NT5C2P49902 561 aa9.61□□□□□ -0.87
LIG4-204ENST00000611712 FKBP3Q00688 224 aaKnown RBP9.61□□□□□ -0.87
LIG4-204ENST00000611712 KLHL7Q8IXQ5 586 aa9.61□□□□□ -0.87
LIG4-204ENST00000611712 IFT20Q8IY31 132 aa9.61□□□□□ -0.87
LIG4-204ENST00000611712 FAM71BQ8TC56 605 aa9.61□□□□□ -0.87
LIG4-204ENST00000611712 ARHGEF1Q92888 912 aaKnown RBP9.61□□□□□ -0.87
LIG4-204ENST00000611712 CD209Q9NNX6 404 aa9.61□□□□□ -0.87
LIG4-204ENST00000611712 MED4Q9NPJ6 270 aa9.61□□□□□ -0.87
LIG4-204ENST00000611712 TMEM260Q9NX78 707 aa9.61□□□□□ -0.87
LIG4-204ENST00000611712 HDAC6Q9UBN7 1215 aa9.61□□□□□ -0.87
LIG4-204ENST00000611712 BCL9O00512 1426 aa9.61□□□□□ -0.87
LIG4-204ENST00000611712 CAMTA1Q9Y6Y1 1673 aa9.61□□□□□ -0.87
LIG4-204ENST00000611712 FAM237AA0A1B0GTK4 181 aa9.6□□□□□ -0.87
LIG4-204ENST00000611712 POTEMA6NI47 508 aa9.6□□□□□ -0.87
LIG4-204ENST00000611712 TTLL1O95922 423 aa9.6□□□□□ -0.87
LIG4-204ENST00000611712 SERPINB2P05120 415 aa9.6□□□□□ -0.87
LIG4-204ENST00000611712 KRT13P13646 458 aa9.6□□□□□ -0.87
LIG4-204ENST00000611712 H2AFXP16104 143 aaPredicted RBP9.6□□□□□ -0.87
LIG4-204ENST00000611712 ADAM9Q13443 819 aa9.6□□□□□ -0.87
LIG4-204ENST00000611712 TRIM65Q6PJ69 517 aa9.6□□□□□ -0.87
LIG4-204ENST00000611712 LINC00116Q8NCU8 138 aa9.6□□□□□ -0.87
LIG4-204ENST00000611712 CEP104O60308 925 aa9.6□□□□□ -0.87
LIG4-204ENST00000611712 GCNT3O95395 438 aa9.6□□□□□ -0.87
LIG4-204ENST00000611712 FCER1AP12319 257 aa9.6□□□□□ -0.87
LIG4-204ENST00000611712 ATRIPQ8WXE1 791 aa9.6□□□□□ -0.87
LIG4-204ENST00000611712 CCSER1Q9C0I3 900 aa9.6□□□□□ -0.87
LIG4-204ENST00000611712 ADAM21Q9UKJ8 722 aa9.6□□□□□ -0.87
LIG4-204ENST00000611712 A0A087X0B3 334 aa9.6□□□□□ -0.87
LIG4-204ENST00000611712 MOCS3O95396 460 aa9.6□□□□□ -0.87
LIG4-204ENST00000611712 GNA14O95837 355 aa9.6□□□□□ -0.87
LIG4-204ENST00000611712 SSR1P43307 286 aaKnown RBP9.6□□□□□ -0.87
LIG4-204ENST00000611712 MDM2Q00987 491 aaPredicted RBP9.6□□□□□ -0.87
LIG4-204ENST00000611712 KCNB1Q14721 858 aa9.6□□□□□ -0.87
LIG4-204ENST00000611712 PTPROQ16827 1216 aa9.6□□□□□ -0.87
LIG4-204ENST00000611712 KIAA0753Q2KHM9 967 aa9.6□□□□□ -0.87
LIG4-204ENST00000611712 TMED8Q6PL24 325 aaPredicted RBP9.6□□□□□ -0.87
LIG4-204ENST00000611712 KIAA0825Q8IV33 1275 aa9.6□□□□□ -0.87
LIG4-204ENST00000611712 HPS3Q969F9 1004 aa9.6□□□□□ -0.87
LIG4-204ENST00000611712 ARMCX3Q9UH62 379 aaPredicted RBP9.6□□□□□ -0.87
LIG4-204ENST00000611712 TSKSQ9UJT2 592 aa9.6□□□□□ -0.87
LIG4-204ENST00000611712 PCDHB13Q9Y5F0 798 aa9.6□□□□□ -0.87
LIG4-204ENST00000611712 SPATA31A1Q5TZJ5 1347 aa9.6□□□□□ -0.87
LIG4-204ENST00000611712 MED1Q15648 1581 aaPredicted RBP9.6□□□□□ -0.87
LIG4-204ENST00000611712 GOLGA6L10A0A0M3HER8 536 aa9.6□□□□□ -0.87
LIG4-204ENST00000611712 FAM170AA1A519 330 aa9.6□□□□□ -0.87
LIG4-204ENST00000611712 CALUO43852 315 aaPredicted RBP9.6□□□□□ -0.87
LIG4-204ENST00000611712 BBOX1O75936 387 aa9.6□□□□□ -0.87
LIG4-204ENST00000611712 KIF11P52732 1056 aa9.6□□□□□ -0.87
LIG4-204ENST00000611712 C2orf54Q08AI8 447 aa9.6□□□□□ -0.87
LIG4-204ENST00000611712 RPS6KA1Q15418 735 aa9.6□□□□□ -0.87
LIG4-204ENST00000611712 GPATCH4Q5T3I0 446 aaKnown RBP9.6□□□□□ -0.87
LIG4-204ENST00000611712 NT5DC1Q5TFE4 455 aa9.6□□□□□ -0.87
LIG4-204ENST00000611712 C3orf67Q6ZVT6 689 aa9.6□□□□□ -0.87
LIG4-204ENST00000611712 POTEDQ86YR6 584 aa9.6□□□□□ -0.87
LIG4-204ENST00000611712 TRIM9Q9C026 710 aa9.6□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms