RNA–Protein interactions for RNA: ENST00000601981.5

UPF1-213, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 556 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-213ENST00000601981 SAMD3Q8N6K7 520 aa11.59□□□□□ -0.55
UPF1-213ENST00000601981 FAM184AQ8NB25 1140 aa11.59□□□□□ -0.55
UPF1-213ENST00000601981 RGS22Q8NE09 1264 aa11.59□□□□□ -0.55
UPF1-213ENST00000601981 CCDC12Q8WUD4 166 aaPredicted RBP11.59□□□□□ -0.55
UPF1-213ENST00000601981 FOXD4L4Q8WXT5 416 aaPredicted RBP11.59□□□□□ -0.55
UPF1-213ENST00000601981 PIBF1Q8WXW3 757 aa11.59□□□□□ -0.55
UPF1-213ENST00000601981 RNF26Q9BY78 433 aaPredicted RBP11.59□□□□□ -0.55
UPF1-213ENST00000601981 NCOA5Q9HCD5 579 aaKnown RBP11.59□□□□□ -0.55
UPF1-213ENST00000601981 TRAK2O60296 914 aa11.58□□□□□ -0.56
UPF1-213ENST00000601981 ADORA2AP29274 412 aa11.58□□□□□ -0.56
UPF1-213ENST00000601981 MAP2K5Q13163 448 aa11.58□□□□□ -0.56
UPF1-213ENST00000601981 IRF5Q13568 498 aa11.58□□□□□ -0.56
UPF1-213ENST00000601981 NSMFQ6X4W1 530 aa11.58□□□□□ -0.56
UPF1-213ENST00000601981 CMTR1Q8N1G2 835 aaKnown RBP11.58□□□□□ -0.56
UPF1-213ENST00000601981 WASF1Q92558 559 aa11.58□□□□□ -0.56
UPF1-213ENST00000601981 MPHOSPH6Q99547 160 aaKnown RBP11.58□□□□□ -0.56
UPF1-213ENST00000601981 APBA2Q99767 749 aa11.58□□□□□ -0.56
UPF1-213ENST00000601981 SLC26A6Q9BXS9 759 aa11.58□□□□□ -0.56
UPF1-213ENST00000601981 RIPK3Q9Y572 518 aa11.58□□□□□ -0.56
UPF1-213ENST00000601981 B4DLN1 442 aa11.57□□□□□ -0.56
UPF1-213ENST00000601981 PRPF3O43395 683 aaKnown RBP11.57□□□□□ -0.56
UPF1-213ENST00000601981 XRCC5P13010 732 aaKnown RBP11.57□□□□□ -0.56
UPF1-213ENST00000601981 XBP1P17861 261 aa11.57□□□□□ -0.56
UPF1-213ENST00000601981 CTGFP29279 349 aa11.57□□□□□ -0.56
UPF1-213ENST00000601981 FLT3LGP49771 235 aa11.57□□□□□ -0.56
UPF1-213ENST00000601981 MRPL12P52815 198 aaKnown RBP11.57□□□□□ -0.56
UPF1-213ENST00000601981 MLLT1Q03111 559 aaPredicted RBP11.57□□□□□ -0.56
UPF1-213ENST00000601981 PRKCZQ05513 592 aa11.57□□□□□ -0.56
UPF1-213ENST00000601981 MORN1Q5T089 497 aa11.57□□□□□ -0.56
UPF1-213ENST00000601981 PPP1R18Q6NYC8 613 aa11.57□□□□□ -0.56
UPF1-213ENST00000601981 FBXO46Q6PJ61 603 aaPredicted RBP11.57□□□□□ -0.56
UPF1-213ENST00000601981 RNF207Q6ZRF8 634 aa11.57□□□□□ -0.56
UPF1-213ENST00000601981 HEATR3Q7Z4Q2 680 aa11.57□□□□□ -0.56
UPF1-213ENST00000601981 TEX2Q8IWB9 1127 aa11.57□□□□□ -0.56
UPF1-213ENST00000601981 TMEM87AQ8NBN3 555 aa11.57□□□□□ -0.56
UPF1-213ENST00000601981 SLAIN1Q8ND83 568 aa11.57□□□□□ -0.56
UPF1-213ENST00000601981 CCDC148Q8NFR7 591 aa11.57□□□□□ -0.56
UPF1-213ENST00000601981 CUL5Q93034 780 aa11.57□□□□□ -0.56
UPF1-213ENST00000601981 GLT8D2Q9H1C3 349 aa11.57□□□□□ -0.56
UPF1-213ENST00000601981 FAM217BQ9NTX9 383 aaPredicted RBP11.57□□□□□ -0.56
UPF1-213ENST00000601981 LMBRD1Q9NUN5 540 aa11.57□□□□□ -0.56
UPF1-213ENST00000601981 MAP3K20Q9NYL2 800 aaKnown RBP11.57□□□□□ -0.56
UPF1-213ENST00000601981 PTPN22Q9Y2R2 807 aa11.57□□□□□ -0.56
UPF1-213ENST00000601981 V9GY48 417 aaPredicted RBP11.57□□□□□ -0.56
UPF1-213ENST00000601981 MCM3APO60318 1980 aa11.57□□□□□ -0.56
UPF1-213ENST00000601981 H3BQV1 296 aa11.56□□□□□ -0.56
UPF1-213ENST00000601981 POTEB2H3BUK9 544 aa11.56□□□□□ -0.56
UPF1-213ENST00000601981 DEXIO95424 95 aa11.56□□□□□ -0.56
UPF1-213ENST00000601981 SCG2P13521 617 aa11.56□□□□□ -0.56
UPF1-213ENST00000601981 CYP2B6P20813 491 aa11.56□□□□□ -0.56
UPF1-213ENST00000601981 NAPAP54920 295 aa11.56□□□□□ -0.56
UPF1-213ENST00000601981 FUT2Q10981 343 aa11.56□□□□□ -0.56
UPF1-213ENST00000601981 PFKFB3Q16875 520 aaPredicted RBP11.56□□□□□ -0.56
UPF1-213ENST00000601981 SLC35G1Q2M3R5 365 aa11.56□□□□□ -0.56
UPF1-213ENST00000601981 MUM1L1Q5H9M0 696 aa11.56□□□□□ -0.56
UPF1-213ENST00000601981 FAM177A1Q8N128 213 aaPredicted RBP11.56□□□□□ -0.56
UPF1-213ENST00000601981 PXYLP1Q8TE99 480 aa11.56□□□□□ -0.56
UPF1-213ENST00000601981 PHKBQ93100 1093 aa11.56□□□□□ -0.56
UPF1-213ENST00000601981 MCOLN1Q9GZU1 580 aa11.56□□□□□ -0.56
UPF1-213ENST00000601981 A1CFQ9NQ94 594 aaKnown RBP11.56□□□□□ -0.56
UPF1-213ENST00000601981 ADD3Q9UEY8 706 aaKnown RBP11.56□□□□□ -0.56
UPF1-213ENST00000601981 DIS3Q9Y2L1 958 aaKnown RBP11.56□□□□□ -0.56
UPF1-213ENST00000601981 STK36Q9NRP7 1315 aa11.56□□□□□ -0.56
UPF1-213ENST00000601981 LCTP09848 1927 aa11.55□□□□□ -0.56
UPF1-213ENST00000601981 hCG_1642624A0A1W2PR95 340 aa11.55□□□□□ -0.56
UPF1-213ENST00000601981 GCOM1H8Y6P7 765 aaPredicted RBP11.55□□□□□ -0.56
UPF1-213ENST00000601981 NFIBO00712 420 aa11.55□□□□□ -0.56
UPF1-213ENST00000601981 ADCY3O60266 1144 aa11.55□□□□□ -0.56
UPF1-213ENST00000601981 DTNBO60941 627 aa11.55□□□□□ -0.56
UPF1-213ENST00000601981 CFBP00751 764 aa11.55□□□□□ -0.56
UPF1-213ENST00000601981 HOXC6P09630 235 aa11.55□□□□□ -0.56
UPF1-213ENST00000601981 POLR2MP0CAP2 368 aa11.55□□□□□ -0.56
UPF1-213ENST00000601981 FDPSP14324 419 aaKnown RBP11.55□□□□□ -0.56
UPF1-213ENST00000601981 RESTQ13127 1097 aa11.55□□□□□ -0.56
UPF1-213ENST00000601981 NTRK3Q16288 839 aa11.55□□□□□ -0.56
UPF1-213ENST00000601981 CSPP1Q1MSJ5 1256 aa11.55□□□□□ -0.56
UPF1-213ENST00000601981 KLHL40Q2TBA0 621 aa11.55□□□□□ -0.56
UPF1-213ENST00000601981 SLC9C1Q4G0N8 1177 aa11.55□□□□□ -0.56
UPF1-213ENST00000601981 ZSCAN16Q9H4T2 348 aaPredicted RBP11.55□□□□□ -0.56
UPF1-213ENST00000601981 BARHL2Q9NY43 387 aa11.55□□□□□ -0.56
UPF1-213ENST00000601981 CYP39A1Q9NYL5 469 aa11.55□□□□□ -0.56
UPF1-213ENST00000601981 ORC3Q9UBD5 711 aaPredicted RBP11.55□□□□□ -0.56
UPF1-213ENST00000601981 BIN2Q9UBW5 565 aaPredicted RBP11.55□□□□□ -0.56
UPF1-213ENST00000601981 GJD2Q9UKL4 321 aa11.55□□□□□ -0.56
UPF1-213ENST00000601981 GABRQQ9UN88 632 aa11.55□□□□□ -0.56
UPF1-213ENST00000601981 PTCH2Q9Y6C5 1203 aa11.55□□□□□ -0.56
UPF1-213ENST00000601981 LOC102724159A0A0B4J2E5 919 aa11.54□□□□□ -0.56
UPF1-213ENST00000601981 ASB14A6NK59 587 aa11.54□□□□□ -0.56
UPF1-213ENST00000601981 PPP1R11O60927 126 aaPredicted RBP11.54□□□□□ -0.56
UPF1-213ENST00000601981 HMGCRP04035 888 aa11.54□□□□□ -0.56
UPF1-213ENST00000601981 PGK2P07205 417 aa11.54□□□□□ -0.56
UPF1-213ENST00000601981 CALML3P27482 149 aa11.54□□□□□ -0.56
UPF1-213ENST00000601981 GNA11P29992 359 aa11.54□□□□□ -0.56
UPF1-213ENST00000601981 GRK4P32298 578 aa11.54□□□□□ -0.56
UPF1-213ENST00000601981 RPS6P62753 249 aaKnown RBP11.54□□□□□ -0.56
UPF1-213ENST00000601981 UBXN2AP68543 259 aa11.54□□□□□ -0.56
UPF1-213ENST00000601981 BAATQ14032 418 aaPredicted RBP11.54□□□□□ -0.56
UPF1-213ENST00000601981 PWP2Q15269 919 aaKnown RBP11.54□□□□□ -0.56
UPF1-213ENST00000601981 MFSD14CQ5VZR4 134 aa11.54□□□□□ -0.56
UPF1-213ENST00000601981 OLFML2BQ68BL8 750 aa11.54□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms