RNA–Protein interactions for RNA: ENST00000599575.5

SHKBP1-219, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 810 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-219ENST00000599575 ECM2O94769 699 aaPredicted RBP19.07■□□□□ 0.64
SHKBP1-219ENST00000599575 HMGCRP04035 888 aa19.07■□□□□ 0.64
SHKBP1-219ENST00000599575 POLR2MP0CAP2 368 aa19.07■□□□□ 0.64
SHKBP1-219ENST00000599575 XBP1P17861 261 aa19.07■□□□□ 0.64
SHKBP1-219ENST00000599575 BAATQ14032 418 aaPredicted RBP19.07■□□□□ 0.64
SHKBP1-219ENST00000599575 SLC9C1Q4G0N8 1177 aa19.07■□□□□ 0.64
SHKBP1-219ENST00000599575 MAMDC4Q6UXC1 1216 aa19.07■□□□□ 0.64
SHKBP1-219ENST00000599575 NOL8Q76FK4 1167 aaKnown RBP19.07■□□□□ 0.64
SHKBP1-219ENST00000599575 CCDC148Q8NFR7 591 aa19.07■□□□□ 0.64
SHKBP1-219ENST00000599575 PIBF1Q8WXW3 757 aa19.07■□□□□ 0.64
SHKBP1-219ENST00000599575 CUL5Q93034 780 aa19.07■□□□□ 0.64
SHKBP1-219ENST00000599575 MAML3Q96JK9 1138 aa19.07■□□□□ 0.64
SHKBP1-219ENST00000599575 PSTPIP2Q9H939 334 aa19.07■□□□□ 0.64
SHKBP1-219ENST00000599575 SYNGAP1Q96PV0 1343 aa19.06■□□□□ 0.64
SHKBP1-219ENST00000599575 ASB14A6NK59 587 aa19.06■□□□□ 0.64
SHKBP1-219ENST00000599575 OPLAHO14841 1288 aa19.06■□□□□ 0.64
SHKBP1-219ENST00000599575 IGHA2P01877 340 aa19.06■□□□□ 0.64
SHKBP1-219ENST00000599575 PGK2P07205 417 aa19.06■□□□□ 0.64
SHKBP1-219ENST00000599575 GNA11P29992 359 aa19.06■□□□□ 0.64
SHKBP1-219ENST00000599575 NAPAP54920 295 aa19.06■□□□□ 0.64
SHKBP1-219ENST00000599575 HMGN5P82970 282 aaKnown RBP19.06■□□□□ 0.64
SHKBP1-219ENST00000599575 PKN1Q16512 942 aa19.06■□□□□ 0.64
SHKBP1-219ENST00000599575 MFSD14CQ5VZR4 134 aa19.06■□□□□ 0.64
SHKBP1-219ENST00000599575 WWC2Q6AWC2 1192 aa19.06■□□□□ 0.64
SHKBP1-219ENST00000599575 ARMC5Q96C12 935 aa19.06■□□□□ 0.64
SHKBP1-219ENST00000599575 MCOLN1Q9GZU1 580 aa19.06■□□□□ 0.64
SHKBP1-219ENST00000599575 STXBP3O00186 592 aa19.05■□□□□ 0.64
SHKBP1-219ENST00000599575 LARGE1O95461 756 aa19.05■□□□□ 0.64
SHKBP1-219ENST00000599575 CFBP00751 764 aa19.05■□□□□ 0.64
SHKBP1-219ENST00000599575 CAPN2P17655 700 aa19.05■□□□□ 0.64
SHKBP1-219ENST00000599575 UBXN2AP68543 259 aa19.05■□□□□ 0.64
SHKBP1-219ENST00000599575 GALNT17Q6IS24 598 aa19.05■□□□□ 0.64
SHKBP1-219ENST00000599575 NECAB1Q8N987 351 aa19.05■□□□□ 0.64
SHKBP1-219ENST00000599575 NSUN7Q8NE18 718 aaKnown RBP19.05■□□□□ 0.64
SHKBP1-219ENST00000599575 BICD2Q8TD16 824 aa19.05■□□□□ 0.64
SHKBP1-219ENST00000599575 NSUN6Q8TEA1 469 aaKnown RBP19.05■□□□□ 0.64
SHKBP1-219ENST00000599575 SNX21Q969T3 373 aa19.05■□□□□ 0.64
SHKBP1-219ENST00000599575 TMX3Q96JJ7 454 aa19.05■□□□□ 0.64
SHKBP1-219ENST00000599575 TINF2Q9BSI4 451 aa19.05■□□□□ 0.64
SHKBP1-219ENST00000599575 KIF3AQ9Y496 699 aa19.05■□□□□ 0.64
SHKBP1-219ENST00000599575 hCG_1642624A0A1W2PR95 340 aa19.04■□□□□ 0.64
SHKBP1-219ENST00000599575 CTDNEP1O95476 244 aa19.04■□□□□ 0.64
SHKBP1-219ENST00000599575 COL13A1Q5TAT6 717 aaPredicted RBP19.04■□□□□ 0.64
SHKBP1-219ENST00000599575 NPLOC4Q8TAT6 608 aa19.04■□□□□ 0.64
SHKBP1-219ENST00000599575 SYTL5Q8TDW5 730 aaPredicted RBP19.04■□□□□ 0.64
SHKBP1-219ENST00000599575 MORC4Q8TE76 937 aa19.04■□□□□ 0.64
SHKBP1-219ENST00000599575 IWS1Q96ST2 819 aa19.04■□□□□ 0.64
SHKBP1-219ENST00000599575 ZMYND12Q9H0C1 365 aa19.04■□□□□ 0.64
SHKBP1-219ENST00000599575 C6orf50Q9HD87 102 aa19.04■□□□□ 0.64
SHKBP1-219ENST00000599575 RIC8AQ9NPQ8 531 aa19.04■□□□□ 0.64
SHKBP1-219ENST00000599575 ORC3Q9UBD5 711 aaPredicted RBP19.04■□□□□ 0.64
SHKBP1-219ENST00000599575 FOSP01100 380 aaPredicted RBP19.03■□□□□ 0.64
SHKBP1-219ENST00000599575 CALML3P27482 149 aa19.03■□□□□ 0.64
SHKBP1-219ENST00000599575 MAP3K21Q5TCX8 1036 aa19.03■□□□□ 0.64
SHKBP1-219ENST00000599575 SLC30A10Q6XR72 485 aa19.03■□□□□ 0.64
SHKBP1-219ENST00000599575 SMARCC2Q8TAQ2 1214 aa19.03■□□□□ 0.64
SHKBP1-219ENST00000599575 TRIB2Q92519 343 aa19.03■□□□□ 0.64
SHKBP1-219ENST00000599575 GPKOWQ92917 476 aaPredicted RBP eCLIP19.03■□□□□ 0.64
SHKBP1-219ENST00000599575 HTTP42858 3142 aa19.03■□□□□ 0.64
SHKBP1-219ENST00000599575 PLXNB2O15031 1838 aa19.02■□□□□ 0.64
SHKBP1-219ENST00000599575 SOWAHBA6NEL2 793 aa19.02■□□□□ 0.64
SHKBP1-219ENST00000599575 SMCO2A6NFE2 343 aa19.02■□□□□ 0.64
SHKBP1-219ENST00000599575 MEIS2O14770 477 aa19.02■□□□□ 0.64
SHKBP1-219ENST00000599575 TAL1P17542 331 aaPredicted RBP19.02■□□□□ 0.64
SHKBP1-219ENST00000599575 ADCY7P51828 1080 aa19.02■□□□□ 0.64
SHKBP1-219ENST00000599575 CNTN2Q02246 1040 aa19.02■□□□□ 0.64
SHKBP1-219ENST00000599575 XRRA1Q6P2D8 792 aa19.02■□□□□ 0.64
SHKBP1-219ENST00000599575 CCDC83Q8IWF9 413 aa19.02■□□□□ 0.64
SHKBP1-219ENST00000599575 RMDN3Q96TC7 470 aa19.02■□□□□ 0.64
SHKBP1-219ENST00000599575 EHMT1Q9H9B1 1298 aa19.02■□□□□ 0.64
SHKBP1-219ENST00000599575 BIN2Q9UBW5 565 aaPredicted RBP19.02■□□□□ 0.64
SHKBP1-219ENST00000599575 CNPY2Q9Y2B0 182 aa19.02■□□□□ 0.64
SHKBP1-219ENST00000599575 ZSCAN21Q9Y5A6 473 aaPredicted RBP19.02■□□□□ 0.64
SHKBP1-219ENST00000599575 CD2BP2O95400 341 aaKnown RBP19.01■□□□□ 0.63
SHKBP1-219ENST00000599575 ELNP15502 786 aa19.01■□□□□ 0.63
SHKBP1-219ENST00000599575 EDNRBP24530 442 aa19.01■□□□□ 0.63
SHKBP1-219ENST00000599575 ALDH5A1P51649 535 aaPredicted RBP19.01■□□□□ 0.63
SHKBP1-219ENST00000599575 AP3B2Q13367 1082 aa19.01■□□□□ 0.63
SHKBP1-219ENST00000599575 ZNF333Q96JL9 665 aa19.01■□□□□ 0.63
SHKBP1-219ENST00000599575 FGD4Q96M96 766 aa19.01■□□□□ 0.63
SHKBP1-219ENST00000599575 ABHD16BQ9H3Z7 469 aa19.01■□□□□ 0.63
SHKBP1-219ENST00000599575 ZSWIM8A7E2V4 1837 aa19.01■□□□□ 0.63
SHKBP1-219ENST00000599575 BAZ2BQ9UIF8 2168 aaKnown RBP19■□□□□ 0.63
SHKBP1-219ENST00000599575 RPTORQ8N122 1335 aa19■□□□□ 0.63
SHKBP1-219ENST00000599575 SPDYE3A6NKU9 549 aa19■□□□□ 0.63
SHKBP1-219ENST00000599575 INHAP05111 366 aa19■□□□□ 0.63
SHKBP1-219ENST00000599575 ST3GAL1Q11201 340 aa19■□□□□ 0.63
SHKBP1-219ENST00000599575 CUL4AQ13619 759 aa19■□□□□ 0.63
SHKBP1-219ENST00000599575 CCL14Q16627 93 aa19■□□□□ 0.63
SHKBP1-219ENST00000599575 ARHGEF16Q5VV41 709 aa19■□□□□ 0.63
SHKBP1-219ENST00000599575 TYW1BQ6NUM6 668 aa19■□□□□ 0.63
SHKBP1-219ENST00000599575 TBC1D5Q92609 795 aa19■□□□□ 0.63
SHKBP1-219ENST00000599575 FLRT1Q9NZU1 646 aa19■□□□□ 0.63
SHKBP1-219ENST00000599575 FRMPD4Q14CM0 1322 aa19■□□□□ 0.63
SHKBP1-219ENST00000599575 K7ELQ4 463 aaPredicted RBP18.99■□□□□ 0.63
SHKBP1-219ENST00000599575 MSCO60682 206 aa18.99■□□□□ 0.63
SHKBP1-219ENST00000599575 STAM2O75886 525 aa18.99■□□□□ 0.63
SHKBP1-219ENST00000599575 FDPSP14324 419 aaKnown RBP18.99■□□□□ 0.63
SHKBP1-219ENST00000599575 ARMCX2Q7L311 632 aa18.99■□□□□ 0.63
SHKBP1-219ENST00000599575 REXO1Q8N1G1 1221 aaKnown RBP18.99■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms