RNA–Protein interactions for RNA: ENST00000598570.5

USHBP1-209, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

TSL 3

Gene USHBP1, Length 588 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-209ENST00000598570 NFXL1Q6ZNB6 911 aa20.47■□□□□ 0.87
USHBP1-209ENST00000598570 RUFY3Q7L099 469 aa20.47■□□□□ 0.87
USHBP1-209ENST00000598570 MCF2L2Q86YR7 1114 aa20.47■□□□□ 0.87
USHBP1-209ENST00000598570 SYTL5Q8TDW5 730 aaPredicted RBP20.47■□□□□ 0.87
USHBP1-209ENST00000598570 TCEANC2Q96MN5 208 aa20.47■□□□□ 0.87
USHBP1-209ENST00000598570 ADD3Q9UEY8 706 aaKnown RBP20.47■□□□□ 0.87
USHBP1-209ENST00000598570 CNPY2Q9Y2B0 182 aa20.47■□□□□ 0.87
USHBP1-209ENST00000598570 PCDHA1Q9Y5I3 950 aa20.47■□□□□ 0.87
USHBP1-209ENST00000598570 FARP2O94887 1054 aaPredicted RBP20.46■□□□□ 0.87
USHBP1-209ENST00000598570 PLEKHA8P1O95397 391 aa20.46■□□□□ 0.87
USHBP1-209ENST00000598570 CPA1P15085 419 aa20.46■□□□□ 0.87
USHBP1-209ENST00000598570 USH1GQ495M9 461 aa20.46■□□□□ 0.87
USHBP1-209ENST00000598570 TAPT1Q6NXT6 567 aa20.46■□□□□ 0.87
USHBP1-209ENST00000598570 NUP133Q8WUM0 1156 aa20.46■□□□□ 0.87
USHBP1-209ENST00000598570 PURBQ96QR8 312 aaKnown RBP20.46■□□□□ 0.87
USHBP1-209ENST00000598570 LRRC37A2A6NM11 1700 aa20.46■□□□□ 0.87
USHBP1-209ENST00000598570 AKR1A1P14550 325 aa20.45■□□□□ 0.86
USHBP1-209ENST00000598570 ALDH5A1P51649 535 aaPredicted RBP20.45■□□□□ 0.86
USHBP1-209ENST00000598570 Q6ZUG5 572 aa20.45■□□□□ 0.86
USHBP1-209ENST00000598570 TEX2Q8IWB9 1127 aa20.45■□□□□ 0.86
USHBP1-209ENST00000598570 RBM28Q9NW13 759 aaKnown RBP20.45■□□□□ 0.86
USHBP1-209ENST00000598570 COL20A1Q9P218 1284 aa20.45■□□□□ 0.86
USHBP1-209ENST00000598570 FAM184BQ9ULE4 1060 aa20.45■□□□□ 0.86
USHBP1-209ENST00000598570 DNAH12Q6ZR08 3092 aa20.45■□□□□ 0.86
USHBP1-209ENST00000598570 DNM1LO00429 736 aa20.44■□□□□ 0.86
USHBP1-209ENST00000598570 ZBTB43O43298 467 aa20.44■□□□□ 0.86
USHBP1-209ENST00000598570 DUSP11O75319 330 aaKnown RBP20.44■□□□□ 0.86
USHBP1-209ENST00000598570 SEC24BO95487 1268 aa20.44■□□□□ 0.86
USHBP1-209ENST00000598570 CASTP20810 708 aaKnown RBP20.44■□□□□ 0.86
USHBP1-209ENST00000598570 CCSAPQ6IQ19 270 aaPredicted RBP20.44■□□□□ 0.86
USHBP1-209ENST00000598570 PAWRQ96IZ0 340 aaKnown RBP20.44■□□□□ 0.86
USHBP1-209ENST00000598570 UPF3AQ9H1J1 476 aaKnown RBP20.44■□□□□ 0.86
USHBP1-209ENST00000598570 VTA1Q9NP79 307 aa20.44■□□□□ 0.86
USHBP1-209ENST00000598570 PTPDC1A2A3K4 754 aa20.43■□□□□ 0.86
USHBP1-209ENST00000598570 ADCY6O43306 1168 aa20.43■□□□□ 0.86
USHBP1-209ENST00000598570 DHX16O60231 1041 aaKnown RBP20.43■□□□□ 0.86
USHBP1-209ENST00000598570 CNGA1P29973 690 aa20.43■□□□□ 0.86
USHBP1-209ENST00000598570 TOB2Q14106 344 aaPredicted RBP20.43■□□□□ 0.86
USHBP1-209ENST00000598570 CCDC144BQ3MJ40 725 aa20.43■□□□□ 0.86
USHBP1-209ENST00000598570 C8orf34Q49A92 452 aa20.43■□□□□ 0.86
USHBP1-209ENST00000598570 IQSEC1Q6DN90 963 aa20.43■□□□□ 0.86
USHBP1-209ENST00000598570 SYNE3Q6ZMZ3 975 aa20.43■□□□□ 0.86
USHBP1-209ENST00000598570 NECAB2Q7Z6G3 386 aa20.43■□□□□ 0.86
USHBP1-209ENST00000598570 ARRDC4Q8NCT1 418 aa20.43■□□□□ 0.86
USHBP1-209ENST00000598570 KLHDC9Q8NEP7 349 aa20.43■□□□□ 0.86
USHBP1-209ENST00000598570 DIS3LQ8TF46 1054 aaKnown RBP20.43■□□□□ 0.86
USHBP1-209ENST00000598570 RRP36Q96EU6 259 aaKnown RBP20.43■□□□□ 0.86
USHBP1-209ENST00000598570 IWS1Q96ST2 819 aa20.43■□□□□ 0.86
USHBP1-209ENST00000598570 GNEQ9Y223 722 aaKnown RBP20.43■□□□□ 0.86
USHBP1-209ENST00000598570 Q9Y3F1 56 aa20.43■□□□□ 0.86
USHBP1-209ENST00000598570 CEP290O15078 2479 aa20.42■□□□□ 0.86
USHBP1-209ENST00000598570 KLF18A0A0U1RQI7 1052 aa20.42■□□□□ 0.86
USHBP1-209ENST00000598570 PIK3CDO00329 1044 aa20.42■□□□□ 0.86
USHBP1-209ENST00000598570 CTAGE5O15320 804 aa20.42■□□□□ 0.86
USHBP1-209ENST00000598570 ADAMTS4O75173 837 aa20.42■□□□□ 0.86
USHBP1-209ENST00000598570 RXRAP19793 462 aa20.42■□□□□ 0.86
USHBP1-209ENST00000598570 CST5P28325 142 aaPredicted RBP20.42■□□□□ 0.86
USHBP1-209ENST00000598570 BRF1Q92994 677 aa20.42■□□□□ 0.86
USHBP1-209ENST00000598570 CYP46A1Q9Y6A2 500 aa20.42■□□□□ 0.86
USHBP1-209ENST00000598570 RARBP10826 455 aa20.41■□□□□ 0.86
USHBP1-209ENST00000598570 CALML3P27482 149 aa20.41■□□□□ 0.86
USHBP1-209ENST00000598570 CDC27P30260 824 aa20.41■□□□□ 0.86
USHBP1-209ENST00000598570 GJA9P57773 515 aa20.41■□□□□ 0.86
USHBP1-209ENST00000598570 LRRC41Q15345 812 aa20.41■□□□□ 0.86
USHBP1-209ENST00000598570 NTRK3Q16288 839 aa20.41■□□□□ 0.86
USHBP1-209ENST00000598570 MICU3Q86XE3 530 aa20.41■□□□□ 0.86
USHBP1-209ENST00000598570 NSUN6Q8TEA1 469 aaKnown RBP20.41■□□□□ 0.86
USHBP1-209ENST00000598570 ZNF274Q96GC6 653 aaPredicted RBP20.41■□□□□ 0.86
USHBP1-209ENST00000598570 TAAR1Q96RJ0 339 aa20.41■□□□□ 0.86
USHBP1-209ENST00000598570 TSEN34Q9BSV6 310 aaKnown RBP20.41■□□□□ 0.86
USHBP1-209ENST00000598570 FRMPD4Q14CM0 1322 aa20.41■□□□□ 0.86
USHBP1-209ENST00000598570 ALPK3Q96L96 1907 aa20.41■□□□□ 0.86
USHBP1-209ENST00000598570 PDIA3P30101 505 aaKnown RBP20.4■□□□□ 0.86
USHBP1-209ENST00000598570 APOBRQ0VD83 1088 aa20.4■□□□□ 0.86
USHBP1-209ENST00000598570 RTN1Q16799 776 aa20.4■□□□□ 0.86
USHBP1-209ENST00000598570 CNTNAP5Q8WYK1 1306 aa20.4■□□□□ 0.86
USHBP1-209ENST00000598570 C11orf49Q9H6J7 331 aa20.4■□□□□ 0.86
USHBP1-209ENST00000598570 PHF24Q9UPV7 400 aa20.4■□□□□ 0.86
USHBP1-209ENST00000598570 CCDC196A0A1B0GTZ2 297 aa20.39■□□□□ 0.85
USHBP1-209ENST00000598570 B4DLN1 442 aa20.39■□□□□ 0.85
USHBP1-209ENST00000598570 MRPL12P52815 198 aaKnown RBP20.39■□□□□ 0.85
USHBP1-209ENST00000598570 C1orf53Q5VUE5 145 aa20.39■□□□□ 0.85
USHBP1-209ENST00000598570 HOMER1Q86YM7 354 aa20.39■□□□□ 0.85
USHBP1-209ENST00000598570 CMTR1Q8N1G2 835 aaKnown RBP20.39■□□□□ 0.85
USHBP1-209ENST00000598570 HTATIP2Q9BUP3 242 aa20.39■□□□□ 0.85
USHBP1-209ENST00000598570 XPNPEP3Q9NQH7 507 aa20.39■□□□□ 0.85
USHBP1-209ENST00000598570 DDX49Q9Y6V7 483 aaKnown RBP20.39■□□□□ 0.85
USHBP1-209ENST00000598570 MEIS2O14770 477 aa20.38■□□□□ 0.85
USHBP1-209ENST00000598570 ADD1P35611 737 aaKnown RBP20.38■□□□□ 0.85
USHBP1-209ENST00000598570 SNX17Q15036 470 aa20.38■□□□□ 0.85
USHBP1-209ENST00000598570 CCDC62Q6P9F0 684 aa20.38■□□□□ 0.85
USHBP1-209ENST00000598570 VSIG10LQ86VR7 867 aa20.38■□□□□ 0.85
USHBP1-209ENST00000598570 RAB11FIP4Q86YS3 637 aa20.38■□□□□ 0.85
USHBP1-209ENST00000598570 RMDN3Q96TC7 470 aa20.38■□□□□ 0.85
USHBP1-209ENST00000598570 PXMP2Q9NR77 195 aa20.38■□□□□ 0.85
USHBP1-209ENST00000598570 PDGFCQ9NRA1 345 aa20.38■□□□□ 0.85
USHBP1-209ENST00000598570 ZHX1Q9UKY1 873 aaPredicted RBP20.38■□□□□ 0.85
USHBP1-209ENST00000598570 KIAA1217Q5T5P2 1943 aa20.37■□□□□ 0.85
USHBP1-209ENST00000598570 SYNRGQ9UMZ2 1314 aa20.37■□□□□ 0.85
USHBP1-209ENST00000598570 GOLGA8AA7E2F4 631 aa20.37■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms