RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 VAT1LQ9HCJ6 419 aa18.74■□□□□ 0.59
TRIM28-213ENST00000598355 ZHX1Q9UKY1 873 aaPredicted RBP18.74■□□□□ 0.59
TRIM28-213ENST00000598355 FAM184BQ9ULE4 1060 aa18.74■□□□□ 0.59
TRIM28-213ENST00000598355 MRPL11Q9Y3B7 192 aaKnown RBP18.74■□□□□ 0.59
TRIM28-213ENST00000598355 PNMA6FA0A0J9YX94 578 aa18.73■□□□□ 0.59
TRIM28-213ENST00000598355 DUSP11O75319 330 aaKnown RBP18.73■□□□□ 0.59
TRIM28-213ENST00000598355 PLEKHA8P1O95397 391 aa18.73■□□□□ 0.59
TRIM28-213ENST00000598355 GNAQP50148 359 aa18.73■□□□□ 0.59
TRIM28-213ENST00000598355 LRRC41Q15345 812 aa18.73■□□□□ 0.59
TRIM28-213ENST00000598355 CCDC144BQ3MJ40 725 aa18.73■□□□□ 0.59
TRIM28-213ENST00000598355 NFXL1Q6ZNB6 911 aa18.73■□□□□ 0.59
TRIM28-213ENST00000598355 MCF2L2Q86YR7 1114 aa18.73■□□□□ 0.59
TRIM28-213ENST00000598355 ARRDC4Q8NCT1 418 aa18.73■□□□□ 0.59
TRIM28-213ENST00000598355 LENG1Q96BZ8 264 aaPredicted RBP18.73■□□□□ 0.59
TRIM28-213ENST00000598355 UPF3AQ9H1J1 476 aaKnown RBP18.73■□□□□ 0.59
TRIM28-213ENST00000598355 VTA1Q9NP79 307 aa18.73■□□□□ 0.59
TRIM28-213ENST00000598355 COL20A1Q9P218 1284 aa18.73■□□□□ 0.59
TRIM28-213ENST00000598355 SLC12A7Q9Y666 1083 aa18.73■□□□□ 0.59
TRIM28-213ENST00000598355 DDX49Q9Y6V7 483 aaKnown RBP18.73■□□□□ 0.59
TRIM28-213ENST00000598355 SYNRGQ9UMZ2 1314 aa18.73■□□□□ 0.59
TRIM28-213ENST00000598355 RXRAP19793 462 aa18.72■□□□□ 0.59
TRIM28-213ENST00000598355 CALML3P27482 149 aa18.72■□□□□ 0.59
TRIM28-213ENST00000598355 CST5P28325 142 aaPredicted RBP18.72■□□□□ 0.59
TRIM28-213ENST00000598355 TRAF1Q13077 416 aa18.72■□□□□ 0.59
TRIM28-213ENST00000598355 TAPT1Q6NXT6 567 aa18.72■□□□□ 0.59
TRIM28-213ENST00000598355 TMTC3Q6ZXV5 915 aa18.72■□□□□ 0.59
TRIM28-213ENST00000598355 SRBD1Q8N5C6 995 aaKnown RBP18.72■□□□□ 0.59
TRIM28-213ENST00000598355 SAMD3Q8N6K7 520 aa18.72■□□□□ 0.59
TRIM28-213ENST00000598355 SYTL5Q8TDW5 730 aaPredicted RBP18.72■□□□□ 0.59
TRIM28-213ENST00000598355 TBC1D5Q92609 795 aa18.72■□□□□ 0.59
TRIM28-213ENST00000598355 JAKMIP1Q96N16 626 aaKnown RBP18.72■□□□□ 0.59
TRIM28-213ENST00000598355 XPNPEP3Q9NQH7 507 aa18.72■□□□□ 0.59
TRIM28-213ENST00000598355 MAP3K20Q9NYL2 800 aaKnown RBP18.72■□□□□ 0.59
TRIM28-213ENST00000598355 BRPF3Q9ULD4 1205 aa18.72■□□□□ 0.59
TRIM28-213ENST00000598355 RPS6KB1P23443 525 aa18.71■□□□□ 0.59
TRIM28-213ENST00000598355 CCSAPQ6IQ19 270 aaPredicted RBP18.71■□□□□ 0.59
TRIM28-213ENST00000598355 BLOC1S2Q6QNY1 142 aa18.71■□□□□ 0.59
TRIM28-213ENST00000598355 MICU3Q86XE3 530 aa18.71■□□□□ 0.59
TRIM28-213ENST00000598355 HOMER1Q86YM7 354 aa18.71■□□□□ 0.59
TRIM28-213ENST00000598355 FANCBQ8NB91 859 aa18.71■□□□□ 0.59
TRIM28-213ENST00000598355 KLHDC9Q8NEP7 349 aa18.71■□□□□ 0.59
TRIM28-213ENST00000598355 GNEQ9Y223 722 aaKnown RBP18.71■□□□□ 0.59
TRIM28-213ENST00000598355 PCDHA1Q9Y5I3 950 aa18.71■□□□□ 0.59
TRIM28-213ENST00000598355 LTBP2Q14767 1821 aa18.71■□□□□ 0.59
TRIM28-213ENST00000598355 CNTNAP5Q8WYK1 1306 aa18.71■□□□□ 0.59
TRIM28-213ENST00000598355 RBM47A0AV96 593 aaKnown RBP18.7■□□□□ 0.58
TRIM28-213ENST00000598355 CPA1P15085 419 aa18.7■□□□□ 0.58
TRIM28-213ENST00000598355 FUT2Q10981 343 aa18.7■□□□□ 0.58
TRIM28-213ENST00000598355 SNX17Q15036 470 aa18.7■□□□□ 0.58
TRIM28-213ENST00000598355 GJC2Q5T442 439 aaPredicted RBP18.7■□□□□ 0.58
TRIM28-213ENST00000598355 FBXO16Q8IX29 292 aaPredicted RBP18.7■□□□□ 0.58
TRIM28-213ENST00000598355 IL17RAQ96F46 866 aa18.7■□□□□ 0.58
TRIM28-213ENST00000598355 TM6SF1Q9BZW5 370 aa18.7■□□□□ 0.58
TRIM28-213ENST00000598355 PHF24Q9UPV7 400 aa18.7■□□□□ 0.58
TRIM28-213ENST00000598355 C11orf97A0A1B0GVM6 126 aaPredicted RBP18.69■□□□□ 0.58
TRIM28-213ENST00000598355 KBTBD13C9JR72 458 aa18.69■□□□□ 0.58
TRIM28-213ENST00000598355 CTAGE5O15320 804 aa18.69■□□□□ 0.58
TRIM28-213ENST00000598355 PGK1P00558 417 aa18.69■□□□□ 0.58
TRIM28-213ENST00000598355 PSMA5P28066 241 aa18.69■□□□□ 0.58
TRIM28-213ENST00000598355 EVCP57679 992 aa18.69■□□□□ 0.58
TRIM28-213ENST00000598355 GJA9P57773 515 aa18.69■□□□□ 0.58
TRIM28-213ENST00000598355 RNF180Q86T96 592 aa18.69■□□□□ 0.58
TRIM28-213ENST00000598355 ZSWIM6Q9HCJ5 1215 aa18.69■□□□□ 0.58
TRIM28-213ENST00000598355 FAM217BQ9NTX9 383 aaPredicted RBP18.69■□□□□ 0.58
TRIM28-213ENST00000598355 RBM28Q9NW13 759 aaKnown RBP18.69■□□□□ 0.58
TRIM28-213ENST00000598355 FRMPD4Q14CM0 1322 aa18.69■□□□□ 0.58
TRIM28-213ENST00000598355 RANBP2P49792 3224 aaKnown RBP18.68■□□□□ 0.58
TRIM28-213ENST00000598355 ZBTB43O43298 467 aa18.68■□□□□ 0.58
TRIM28-213ENST00000598355 CASTP20810 708 aaKnown RBP18.68■□□□□ 0.58
TRIM28-213ENST00000598355 ADCYAP1R1P41586 468 aa18.68■□□□□ 0.58
TRIM28-213ENST00000598355 LRRC26Q2I0M4 334 aa18.68■□□□□ 0.58
TRIM28-213ENST00000598355 RAB11FIP4Q86YS3 637 aa18.68■□□□□ 0.58
TRIM28-213ENST00000598355 RRP36Q96EU6 259 aaKnown RBP18.68■□□□□ 0.58
TRIM28-213ENST00000598355 TAAR1Q96RJ0 339 aa18.68■□□□□ 0.58
TRIM28-213ENST00000598355 TSEN34Q9BSV6 310 aaKnown RBP18.68■□□□□ 0.58
TRIM28-213ENST00000598355 SCN10AQ9Y5Y9 1956 aa18.68■□□□□ 0.58
TRIM28-213ENST00000598355 KLF18A0A0U1RQI7 1052 aa18.67■□□□□ 0.58
TRIM28-213ENST00000598355 MYADML2A6NDP7 307 aa18.67■□□□□ 0.58
TRIM28-213ENST00000598355 CFBP00751 764 aa18.67■□□□□ 0.58
TRIM28-213ENST00000598355 SMPD1P17405 629 aa18.67■□□□□ 0.58
TRIM28-213ENST00000598355 C1orf53Q5VUE5 145 aa18.67■□□□□ 0.58
TRIM28-213ENST00000598355 IQSEC1Q6DN90 963 aa18.67■□□□□ 0.58
TRIM28-213ENST00000598355 SYNE3Q6ZMZ3 975 aa18.67■□□□□ 0.58
TRIM28-213ENST00000598355 Q6ZUG5 572 aa18.67■□□□□ 0.58
TRIM28-213ENST00000598355 CMTR1Q8N1G2 835 aaKnown RBP18.67■□□□□ 0.58
TRIM28-213ENST00000598355 NSUN6Q8TEA1 469 aaKnown RBP18.67■□□□□ 0.58
TRIM28-213ENST00000598355 DPF3Q92784 378 aa18.67■□□□□ 0.58
TRIM28-213ENST00000598355 IWS1Q96ST2 819 aa18.67■□□□□ 0.58
TRIM28-213ENST00000598355 MPHOSPH6Q99547 160 aaKnown RBP18.67■□□□□ 0.58
TRIM28-213ENST00000598355 PXMP2Q9NR77 195 aa18.67■□□□□ 0.58
TRIM28-213ENST00000598355 PDGFCQ9NRA1 345 aa18.67■□□□□ 0.58
TRIM28-213ENST00000598355 Q9Y3F1 56 aa18.67■□□□□ 0.58
TRIM28-213ENST00000598355 MYH7BA7E2Y1 1941 aa18.66■□□□□ 0.58
TRIM28-213ENST00000598355 MOXD2PA6NHM9 499 aa18.66■□□□□ 0.58
TRIM28-213ENST00000598355 H0YGN5 161 aa18.66■□□□□ 0.58
TRIM28-213ENST00000598355 EVI5O60447 810 aa18.66■□□□□ 0.58
TRIM28-213ENST00000598355 CDC27P30260 824 aa18.66■□□□□ 0.58
TRIM28-213ENST00000598355 TNFAIP2Q03169 654 aa18.66■□□□□ 0.58
TRIM28-213ENST00000598355 PPP2R5BQ15173 497 aa18.66■□□□□ 0.58
TRIM28-213ENST00000598355 RTN1Q16799 776 aa18.66■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms