RNA–Protein interactions for RNA: ENST00000597901.1

LIG1-215, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 565 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-215ENST00000597901 LRCH3Q96II8 777 aa17.59■□□□□ 0.41
LIG1-215ENST00000597901 TOX2Q96NM4 488 aa17.59■□□□□ 0.41
LIG1-215ENST00000597901 AP5M1Q9H0R1 490 aa17.59■□□□□ 0.41
LIG1-215ENST00000597901 Q9Y3F1 56 aa17.59■□□□□ 0.41
LIG1-215ENST00000597901 RBM8AQ9Y5S9 174 aaKnown RBP17.59■□□□□ 0.41
LIG1-215ENST00000597901 PQBP1O60828 265 aaKnown RBP17.58■□□□□ 0.4
LIG1-215ENST00000597901 CLTBP09497 229 aa17.58■□□□□ 0.4
LIG1-215ENST00000597901 PTGS1P23219 599 aa17.58■□□□□ 0.4
LIG1-215ENST00000597901 CDK7P50613 346 aa17.58■□□□□ 0.4
LIG1-215ENST00000597901 CHST3Q7LGC8 479 aa17.58■□□□□ 0.4
LIG1-215ENST00000597901 ANKRD33Q7Z3H0 272 aa17.58■□□□□ 0.4
LIG1-215ENST00000597901 SKAP1Q86WV1 359 aa17.58■□□□□ 0.4
LIG1-215ENST00000597901 FBXO11Q86XK2 927 aa17.58■□□□□ 0.4
LIG1-215ENST00000597901 BADQ92934 168 aa17.58■□□□□ 0.4
LIG1-215ENST00000597901 MAF1Q9H063 256 aa17.58■□□□□ 0.4
LIG1-215ENST00000597901 SENP2Q9HC62 589 aa17.58■□□□□ 0.4
LIG1-215ENST00000597901 MAD2L2Q9UI95 211 aa17.58■□□□□ 0.4
LIG1-215ENST00000597901 FRMPD3Q5JV73 1810 aa17.58■□□□□ 0.4
LIG1-215ENST00000597901 ABCB11O95342 1321 aa17.57■□□□□ 0.4
LIG1-215ENST00000597901 RBM47A0AV96 593 aaKnown RBP17.57■□□□□ 0.4
LIG1-215ENST00000597901 ERICH2A1L162 156 aa17.57■□□□□ 0.4
LIG1-215ENST00000597901 DCDC2CA8MYV0 355 aa17.57■□□□□ 0.4
LIG1-215ENST00000597901 FAAP100Q0VG06 881 aa17.57■□□□□ 0.4
LIG1-215ENST00000597901 DNERQ8NFT8 737 aa17.57■□□□□ 0.4
LIG1-215ENST00000597901 IGDCC4Q8TDY8 1250 aa17.57■□□□□ 0.4
LIG1-215ENST00000597901 ESYT1Q9BSJ8 1104 aa17.57■□□□□ 0.4
LIG1-215ENST00000597901 WDR11Q9BZH6 1224 aa17.57■□□□□ 0.4
LIG1-215ENST00000597901 LSG1Q9H089 658 aaKnown RBP17.57■□□□□ 0.4
LIG1-215ENST00000597901 TMEM39AQ9NV64 488 aa17.57■□□□□ 0.4
LIG1-215ENST00000597901 MRPL11Q9Y3B7 192 aaKnown RBP17.57■□□□□ 0.4
LIG1-215ENST00000597901 B4DLN1 442 aa17.56■□□□□ 0.4
LIG1-215ENST00000597901 ARVCFO00192 962 aa17.56■□□□□ 0.4
LIG1-215ENST00000597901 KIAA0355O15063 1070 aa17.56■□□□□ 0.4
LIG1-215ENST00000597901 EDNRBP24530 442 aa17.56■□□□□ 0.4
LIG1-215ENST00000597901 ITGB8P26012 769 aa17.56■□□□□ 0.4
LIG1-215ENST00000597901 MRPL12P52815 198 aaKnown RBP17.56■□□□□ 0.4
LIG1-215ENST00000597901 ANTXR2P58335 489 aa17.56■□□□□ 0.4
LIG1-215ENST00000597901 PDE4DQ08499 809 aa17.56■□□□□ 0.4
LIG1-215ENST00000597901 WTAPQ15007 396 aa17.56■□□□□ 0.4
LIG1-215ENST00000597901 SART3Q15020 963 aaKnown RBP17.56■□□□□ 0.4
LIG1-215ENST00000597901 FSCN1Q16658 493 aaKnown RBP17.56■□□□□ 0.4
LIG1-215ENST00000597901 DUSP28Q4G0W2 176 aa17.56■□□□□ 0.4
LIG1-215ENST00000597901 GPR153Q6NV75 609 aa17.56■□□□□ 0.4
LIG1-215ENST00000597901 TLK2Q86UE8 772 aa17.56■□□□□ 0.4
LIG1-215ENST00000597901 MCF2L2Q86YR7 1114 aa17.56■□□□□ 0.4
LIG1-215ENST00000597901 SYTL5Q8TDW5 730 aaPredicted RBP17.56■□□□□ 0.4
LIG1-215ENST00000597901 MTMR8Q96EF0 704 aa17.56■□□□□ 0.4
LIG1-215ENST00000597901 TAAR1Q96RJ0 339 aa17.56■□□□□ 0.4
LIG1-215ENST00000597901 MPHOSPH6Q99547 160 aaKnown RBP17.56■□□□□ 0.4
LIG1-215ENST00000597901 ZEB2O60315 1214 aa17.55■□□□□ 0.4
LIG1-215ENST00000597901 TROAPQ12815 778 aa17.55■□□□□ 0.4
LIG1-215ENST00000597901 GRM4Q14833 912 aa17.55■□□□□ 0.4
LIG1-215ENST00000597901 BMP2KLQ5H9B9 411 aa17.55■□□□□ 0.4
LIG1-215ENST00000597901 TMEM67Q5HYA8 995 aa17.55■□□□□ 0.4
LIG1-215ENST00000597901 CXCL17Q6UXB2 119 aa17.55■□□□□ 0.4
LIG1-215ENST00000597901 MB21D2Q8IYB1 491 aaPredicted RBP17.55■□□□□ 0.4
LIG1-215ENST00000597901 AMNQ9BXJ7 453 aa17.55■□□□□ 0.4
LIG1-215ENST00000597901 A0A0U1RQG5 324 aaPredicted RBP17.54■□□□□ 0.4
LIG1-215ENST00000597901 CABYRO75952 493 aa17.54■□□□□ 0.4
LIG1-215ENST00000597901 RAG1P15918 1043 aa17.54■□□□□ 0.4
LIG1-215ENST00000597901 NECTIN1Q15223 517 aa17.54■□□□□ 0.4
LIG1-215ENST00000597901 SHHQ15465 462 aa17.54■□□□□ 0.4
LIG1-215ENST00000597901 SLC35G1Q2M3R5 365 aa17.54■□□□□ 0.4
LIG1-215ENST00000597901 RIOX1Q9H6W3 641 aa17.54■□□□□ 0.4
LIG1-215ENST00000597901 COL20A1Q9P218 1284 aa17.54■□□□□ 0.4
LIG1-215ENST00000597901 RANBP2P49792 3224 aaKnown RBP17.54■□□□□ 0.4
LIG1-215ENST00000597901 SLC27A2O14975 620 aa17.53■□□□□ 0.4
LIG1-215ENST00000597901 ZBTB5O15062 677 aa17.53■□□□□ 0.4
LIG1-215ENST00000597901 PPP1R11O60927 126 aaPredicted RBP17.53■□□□□ 0.4
LIG1-215ENST00000597901 CATIPQ7Z7H3 387 aa17.53■□□□□ 0.4
LIG1-215ENST00000597901 SLC43A3Q8NBI5 491 aa17.53■□□□□ 0.4
LIG1-215ENST00000597901 NSUN6Q8TEA1 469 aaKnown RBP17.53■□□□□ 0.4
LIG1-215ENST00000597901 PCDHA1Q9Y5I3 950 aa17.53■□□□□ 0.4
LIG1-215ENST00000597901 GRIN2DO15399 1336 aa17.52■□□□□ 0.4
LIG1-215ENST00000597901 MROH7Q68CQ1 1323 aa17.52■□□□□ 0.4
LIG1-215ENST00000597901 CFBP00751 764 aa17.52■□□□□ 0.4
LIG1-215ENST00000597901 TIMP1P01033 207 aa17.52■□□□□ 0.4
LIG1-215ENST00000597901 ITGA7Q13683 1181 aa17.52■□□□□ 0.4
LIG1-215ENST00000597901 CREB3L3Q68CJ9 461 aa17.52■□□□□ 0.4
LIG1-215ENST00000597901 SCFD2Q8WU76 684 aa17.52■□□□□ 0.4
LIG1-215ENST00000597901 PIGSQ96S52 555 aa17.52■□□□□ 0.4
LIG1-215ENST00000597901 IWS1Q96ST2 819 aa17.52■□□□□ 0.4
LIG1-215ENST00000597901 RMDN3Q96TC7 470 aa17.52■□□□□ 0.4
LIG1-215ENST00000597901 MTA3Q9BTC8 594 aa17.52■□□□□ 0.4
LIG1-215ENST00000597901 ANO2Q9NQ90 1003 aa17.52■□□□□ 0.4
LIG1-215ENST00000597901 GPHNQ9NQX3 736 aaPredicted RBP17.52■□□□□ 0.4
LIG1-215ENST00000597901 OPLAHO14841 1288 aa17.51■□□□□ 0.39
LIG1-215ENST00000597901 NKRFO15226 690 aaKnown RBP eCLIP17.51■□□□□ 0.39
LIG1-215ENST00000597901 PRC1O43663 620 aa17.51■□□□□ 0.39
LIG1-215ENST00000597901 CYTH3O43739 400 aa17.51■□□□□ 0.39
LIG1-215ENST00000597901 TXNP10599 105 aaKnown RBP17.51■□□□□ 0.39
LIG1-215ENST00000597901 MCM5P33992 734 aa17.51■□□□□ 0.39
LIG1-215ENST00000597901 STXBP2Q15833 593 aa17.51■□□□□ 0.39
LIG1-215ENST00000597901 C9orf50Q5SZB4 431 aa17.51■□□□□ 0.39
LIG1-215ENST00000597901 CASC1Q6TDU7 716 aa17.51■□□□□ 0.39
LIG1-215ENST00000597901 HOMER1Q86YM7 354 aa17.51■□□□□ 0.39
LIG1-215ENST00000597901 FAM126BQ8IXS8 530 aa17.51■□□□□ 0.39
LIG1-215ENST00000597901 TMTC2Q8N394 836 aa17.51■□□□□ 0.39
LIG1-215ENST00000597901 DEFB123Q8N688 67 aa17.51■□□□□ 0.39
LIG1-215ENST00000597901 OR6J1Q8NGC5 347 aa17.51■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms