RNA–Protein interactions for RNA: ENST00000597325.1

SHKBP1-213, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 366 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-213ENST00000597325 DCAF4Q8WV16 495 aa13.97□□□□□ -0.17
SHKBP1-213ENST00000597325 WDR18Q9BV38 432 aa13.97□□□□□ -0.17
SHKBP1-213ENST00000597325 TSPYL2Q9H2G4 693 aaPredicted RBP13.97□□□□□ -0.17
SHKBP1-213ENST00000597325 VCPKMTQ9H867 229 aa13.97□□□□□ -0.17
SHKBP1-213ENST00000597325 NCOA5Q9HCD5 579 aaKnown RBP13.97□□□□□ -0.17
SHKBP1-213ENST00000597325 TMX2Q9Y320 296 aa13.97□□□□□ -0.17
SHKBP1-213ENST00000597325 A0A1W2PRG0 241 aa13.96□□□□□ -0.17
SHKBP1-213ENST00000597325 GRXCR1A8MXD5 290 aa13.96□□□□□ -0.17
SHKBP1-213ENST00000597325 USP17L10C9JJH3 530 aa13.96□□□□□ -0.17
SHKBP1-213ENST00000597325 PI4K2BG5E9Z4 385 aa13.96□□□□□ -0.17
SHKBP1-213ENST00000597325 CLTBP09497 229 aa13.96□□□□□ -0.17
SHKBP1-213ENST00000597325 PDHBP11177 359 aa13.96□□□□□ -0.17
SHKBP1-213ENST00000597325 SLC1A4P43007 532 aa13.96□□□□□ -0.17
SHKBP1-213ENST00000597325 HERVK_113P62684 666 aa13.96□□□□□ -0.17
SHKBP1-213ENST00000597325 ERVK-9P63128 1117 aa13.96□□□□□ -0.17
SHKBP1-213ENST00000597325 ERVK-24P63145 666 aa13.96□□□□□ -0.17
SHKBP1-213ENST00000597325 MAP2K5Q13163 448 aa13.96□□□□□ -0.17
SHKBP1-213ENST00000597325 MTMR2Q13614 643 aa13.96□□□□□ -0.17
SHKBP1-213ENST00000597325 CUL4AQ13619 759 aa13.96□□□□□ -0.17
SHKBP1-213ENST00000597325 MFSD14CQ5VZR4 134 aa13.96□□□□□ -0.17
SHKBP1-213ENST00000597325 PLEKHH3Q7Z736 793 aa13.96□□□□□ -0.17
SHKBP1-213ENST00000597325 SIAH1Q8IUQ4 282 aa13.96□□□□□ -0.17
SHKBP1-213ENST00000597325 ARRDC4Q8NCT1 418 aa13.96□□□□□ -0.17
SHKBP1-213ENST00000597325 ACER1Q8TDN7 264 aa13.96□□□□□ -0.17
SHKBP1-213ENST00000597325 INTS4Q96HW7 963 aaKnown RBP13.96□□□□□ -0.17
SHKBP1-213ENST00000597325 KIAA1683Q9H0B3 1180 aa13.96□□□□□ -0.17
SHKBP1-213ENST00000597325 LRRC37A2A6NM11 1700 aa13.95□□□□□ -0.18
SHKBP1-213ENST00000597325 DMDP11532 3685 aa13.95□□□□□ -0.18
SHKBP1-213ENST00000597325 KBTBD13C9JR72 458 aa13.95□□□□□ -0.18
SHKBP1-213ENST00000597325 F5H6K3 240 aa13.95□□□□□ -0.18
SHKBP1-213ENST00000597325 TLL1O43897 1013 aa13.95□□□□□ -0.18
SHKBP1-213ENST00000597325 NDUFB10O96000 172 aa13.95□□□□□ -0.18
SHKBP1-213ENST00000597325 CYBAP13498 195 aa13.95□□□□□ -0.18
SHKBP1-213ENST00000597325 CNGA1P29973 690 aa13.95□□□□□ -0.18
SHKBP1-213ENST00000597325 KLRC3Q07444 240 aa13.95□□□□□ -0.18
SHKBP1-213ENST00000597325 GPATCH4Q5T3I0 446 aaKnown RBP13.95□□□□□ -0.18
SHKBP1-213ENST00000597325 USP17L2Q6R6M4 530 aa13.95□□□□□ -0.18
SHKBP1-213ENST00000597325 GMCL1Q96IK5 515 aa13.95□□□□□ -0.18
SHKBP1-213ENST00000597325 BUD13Q9BRD0 619 aaKnown RBP eCLIP13.95□□□□□ -0.18
SHKBP1-213ENST00000597325 LZTS2Q9BRK4 669 aa13.95□□□□□ -0.18
SHKBP1-213ENST00000597325 LLPHQ9BRT6 129 aaKnown RBP13.95□□□□□ -0.18
SHKBP1-213ENST00000597325 FOXD4L1Q9NU39 408 aa13.95□□□□□ -0.18
SHKBP1-213ENST00000597325 TMOD4Q9NZQ9 345 aa13.95□□□□□ -0.18
SHKBP1-213ENST00000597325 SMC3Q9UQE7 1217 aa13.95□□□□□ -0.18
SHKBP1-213ENST00000597325 FRMPD2Q68DX3 1309 aaPredicted RBP13.94□□□□□ -0.18
SHKBP1-213ENST00000597325 PTPDC1A2A3K4 754 aa13.94□□□□□ -0.18
SHKBP1-213ENST00000597325 PRR33A8MZF0 331 aa13.94□□□□□ -0.18
SHKBP1-213ENST00000597325 C19orf81C9J6K1 198 aa13.94□□□□□ -0.18
SHKBP1-213ENST00000597325 HOXC6P09630 235 aa13.94□□□□□ -0.18
SHKBP1-213ENST00000597325 SNHG28P0DPA3 235 aa13.94□□□□□ -0.18
SHKBP1-213ENST00000597325 RAG1P15918 1043 aa13.94□□□□□ -0.18
SHKBP1-213ENST00000597325 ADCYAP1R1P41586 468 aa13.94□□□□□ -0.18
SHKBP1-213ENST00000597325 SLC4A3P48751 1232 aa13.94□□□□□ -0.18
SHKBP1-213ENST00000597325 BACE1P56817 501 aa13.94□□□□□ -0.18
SHKBP1-213ENST00000597325 IRX3P78415 501 aaPredicted RBP13.94□□□□□ -0.18
SHKBP1-213ENST00000597325 HMGN5P82970 282 aaKnown RBP13.94□□□□□ -0.18
SHKBP1-213ENST00000597325 ZNF543Q08ER8 600 aa13.94□□□□□ -0.18
SHKBP1-213ENST00000597325 ST3GAL1Q11201 340 aa13.94□□□□□ -0.18
SHKBP1-213ENST00000597325 IKQ13123 557 aaPredicted RBP13.94□□□□□ -0.18
SHKBP1-213ENST00000597325 TMTC3Q6ZXV5 915 aa13.94□□□□□ -0.18
SHKBP1-213ENST00000597325 TRIM22Q8IYM9 498 aa13.94□□□□□ -0.18
SHKBP1-213ENST00000597325 SPICE1Q8N0Z3 855 aa13.94□□□□□ -0.18
SHKBP1-213ENST00000597325 SPRYD3Q8NCJ5 442 aa13.94□□□□□ -0.18
SHKBP1-213ENST00000597325 KIF3AQ9Y496 699 aa13.94□□□□□ -0.18
SHKBP1-213ENST00000597325 WDR46O15213 610 aaKnown RBP13.93□□□□□ -0.18
SHKBP1-213ENST00000597325 GOLGA8HP0CJ92 632 aa13.93□□□□□ -0.18
SHKBP1-213ENST00000597325 BMP3P12645 472 aa13.93□□□□□ -0.18
SHKBP1-213ENST00000597325 CDC27P30260 824 aa13.93□□□□□ -0.18
SHKBP1-213ENST00000597325 CYP2C19P33261 490 aa13.93□□□□□ -0.18
SHKBP1-213ENST00000597325 ADD1P35611 737 aaKnown RBP13.93□□□□□ -0.18
SHKBP1-213ENST00000597325 AKAP17AQ02040 695 aaKnown RBP13.93□□□□□ -0.18
SHKBP1-213ENST00000597325 C16orf59Q7L2K0 433 aa13.93□□□□□ -0.18
SHKBP1-213ENST00000597325 RASGRP2Q7LDG7 609 aa13.93□□□□□ -0.18
SHKBP1-213ENST00000597325 GPCPD1Q9NPB8 672 aa13.93□□□□□ -0.18
SHKBP1-213ENST00000597325 MAD2L2Q9UI95 211 aa13.93□□□□□ -0.18
SHKBP1-213ENST00000597325 PALM3A6NDB9 673 aaPredicted RBP13.92□□□□□ -0.18
SHKBP1-213ENST00000597325 KLRF2D3W0D1 207 aa13.92□□□□□ -0.18
SHKBP1-213ENST00000597325 PLEKHA8P1O95397 391 aa13.92□□□□□ -0.18
SHKBP1-213ENST00000597325 IFNAR1P17181 557 aa13.92□□□□□ -0.18
SHKBP1-213ENST00000597325 SSRP1Q08945 709 aaKnown RBP13.92□□□□□ -0.18
SHKBP1-213ENST00000597325 KCTD1Q719H9 257 aa13.92□□□□□ -0.18
SHKBP1-213ENST00000597325 STAG2Q8N3U4 1231 aa13.92□□□□□ -0.18
SHKBP1-213ENST00000597325 FAM184AQ8NB25 1140 aa13.92□□□□□ -0.18
SHKBP1-213ENST00000597325 NSUN7Q8NE18 718 aaKnown RBP13.92□□□□□ -0.18
SHKBP1-213ENST00000597325 NPLOC4Q8TAT6 608 aa13.92□□□□□ -0.18
SHKBP1-213ENST00000597325 HERVK_113Q902F9 699 aa13.92□□□□□ -0.18
SHKBP1-213ENST00000597325 FERMT2Q96AC1 680 aa13.92□□□□□ -0.18
SHKBP1-213ENST00000597325 NUP88Q99567 741 aaPredicted RBP13.92□□□□□ -0.18
SHKBP1-213ENST00000597325 SLC26A6Q9BXS9 759 aa13.92□□□□□ -0.18
SHKBP1-213ENST00000597325 FAM217BQ9NTX9 383 aaPredicted RBP13.92□□□□□ -0.18
SHKBP1-213ENST00000597325 GBF1Q92538 1859 aa13.92□□□□□ -0.18
SHKBP1-213ENST00000597325 CNTNAP5Q8WYK1 1306 aa13.91□□□□□ -0.18
SHKBP1-213ENST00000597325 STK36Q9NRP7 1315 aa13.91□□□□□ -0.18
SHKBP1-213ENST00000597325 PRRC2BQ5JSZ5 2229 aaKnown RBP13.91□□□□□ -0.18
SHKBP1-213ENST00000597325 VCAM1P19320 739 aa13.91□□□□□ -0.18
SHKBP1-213ENST00000597325 GJB2P29033 226 aa13.91□□□□□ -0.18
SHKBP1-213ENST00000597325 STAT2P52630 851 aa13.91□□□□□ -0.18
SHKBP1-213ENST00000597325 LRRC41Q15345 812 aa13.91□□□□□ -0.18
SHKBP1-213ENST00000597325 TMEM240Q5SV17 173 aa13.91□□□□□ -0.18
SHKBP1-213ENST00000597325 FAM83BQ5T0W9 1011 aa13.91□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms