RNA–Protein interactions for RNA: ENST00000593582.5

TRIM28-203, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 533 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-203ENST00000593582 MCF2L2Q86YR7 1114 aa17.78■□□□□ 0.44
TRIM28-203ENST00000593582 MB21D2Q8IYB1 491 aaPredicted RBP17.78■□□□□ 0.44
TRIM28-203ENST00000593582 DNERQ8NFT8 737 aa17.78■□□□□ 0.44
TRIM28-203ENST00000593582 STARD7Q9NQZ5 370 aa17.78■□□□□ 0.44
TRIM28-203ENST00000593582 MRPL11Q9Y3B7 192 aaKnown RBP17.78■□□□□ 0.44
TRIM28-203ENST00000593582 SLC27A2O14975 620 aa17.77■□□□□ 0.44
TRIM28-203ENST00000593582 ANTXR2P58335 489 aa17.77■□□□□ 0.44
TRIM28-203ENST00000593582 MDM2Q00987 491 aaPredicted RBP17.77■□□□□ 0.44
TRIM28-203ENST00000593582 PDE4DQ08499 809 aa17.77■□□□□ 0.44
TRIM28-203ENST00000593582 GRM4Q14833 912 aa17.77■□□□□ 0.44
TRIM28-203ENST00000593582 TAPT1Q6NXT6 567 aa17.77■□□□□ 0.44
TRIM28-203ENST00000593582 TLK2Q86UE8 772 aa17.77■□□□□ 0.44
TRIM28-203ENST00000593582 IGDCC4Q8TDY8 1250 aa17.77■□□□□ 0.44
TRIM28-203ENST00000593582 GLT1D1Q96MS3 346 aa17.77■□□□□ 0.44
TRIM28-203ENST00000593582 AMNQ9BXJ7 453 aa17.77■□□□□ 0.44
TRIM28-203ENST00000593582 UBE2OQ9C0C9 1292 aaKnown RBP17.77■□□□□ 0.44
TRIM28-203ENST00000593582 AP5M1Q9H0R1 490 aa17.77■□□□□ 0.44
TRIM28-203ENST00000593582 SENP2Q9HC62 589 aa17.77■□□□□ 0.44
TRIM28-203ENST00000593582 PRDM5Q9NQX1 630 aaPredicted RBP17.77■□□□□ 0.44
TRIM28-203ENST00000593582 PDGFCQ9NRA1 345 aa17.77■□□□□ 0.44
TRIM28-203ENST00000593582 GNEQ9Y223 722 aaKnown RBP17.77■□□□□ 0.44
TRIM28-203ENST00000593582 MCM3APO60318 1980 aa17.77■□□□□ 0.43
TRIM28-203ENST00000593582 ZBTB5O15062 677 aa17.76■□□□□ 0.43
TRIM28-203ENST00000593582 CDC45O75419 566 aa17.76■□□□□ 0.43
TRIM28-203ENST00000593582 ASGR1P07306 291 aa17.76■□□□□ 0.43
TRIM28-203ENST00000593582 SMPD1P17405 629 aa17.76■□□□□ 0.43
TRIM28-203ENST00000593582 MCM5P33992 734 aa17.76■□□□□ 0.43
TRIM28-203ENST00000593582 NKX3-2P78367 333 aa17.76■□□□□ 0.43
TRIM28-203ENST00000593582 IRX5P78411 483 aaPredicted RBP17.76■□□□□ 0.43
TRIM28-203ENST00000593582 TLE2Q04725 743 aa17.76■□□□□ 0.43
TRIM28-203ENST00000593582 TROAPQ12815 778 aa17.76■□□□□ 0.43
TRIM28-203ENST00000593582 NECTIN1Q15223 517 aa17.76■□□□□ 0.43
TRIM28-203ENST00000593582 RNF20Q5VTR2 975 aa17.76■□□□□ 0.43
TRIM28-203ENST00000593582 CREB3L3Q68CJ9 461 aa17.76■□□□□ 0.43
TRIM28-203ENST00000593582 VTI1AQ96AJ9 217 aa17.76■□□□□ 0.43
TRIM28-203ENST00000593582 MTA3Q9BTC8 594 aa17.76■□□□□ 0.43
TRIM28-203ENST00000593582 ELP1O95163 1332 aa17.75■□□□□ 0.43
TRIM28-203ENST00000593582 PRC1O43663 620 aa17.75■□□□□ 0.43
TRIM28-203ENST00000593582 PQBP1O60828 265 aaKnown RBP17.75■□□□□ 0.43
TRIM28-203ENST00000593582 TRAF1Q13077 416 aa17.75■□□□□ 0.43
TRIM28-203ENST00000593582 FSCN1Q16658 493 aaKnown RBP17.75■□□□□ 0.43
TRIM28-203ENST00000593582 MTMR8Q96EF0 704 aa17.75■□□□□ 0.43
TRIM28-203ENST00000593582 WDR11Q9BZH6 1224 aa17.75■□□□□ 0.43
TRIM28-203ENST00000593582 LY9Q9HBG7 655 aa17.75■□□□□ 0.43
TRIM28-203ENST00000593582 PCDH10Q9P2E7 1040 aa17.75■□□□□ 0.43
TRIM28-203ENST00000593582 Q9Y3F1 56 aa17.75■□□□□ 0.43
TRIM28-203ENST00000593582 CTAGE5O15320 804 aa17.74■□□□□ 0.43
TRIM28-203ENST00000593582 DYNC1LI2O43237 492 aaPredicted RBP17.74■□□□□ 0.43
TRIM28-203ENST00000593582 ZEB2O60315 1214 aa17.74■□□□□ 0.43
TRIM28-203ENST00000593582 CLTBP09497 229 aa17.74■□□□□ 0.43
TRIM28-203ENST00000593582 EDNRBP24530 442 aa17.74■□□□□ 0.43
TRIM28-203ENST00000593582 BEX3Q00994 111 aa17.74■□□□□ 0.43
TRIM28-203ENST00000593582 DUSP28Q4G0W2 176 aa17.74■□□□□ 0.43
TRIM28-203ENST00000593582 HOMER1Q86YM7 354 aa17.74■□□□□ 0.43
TRIM28-203ENST00000593582 TDHQ8IZJ6 230 aa17.74■□□□□ 0.43
TRIM28-203ENST00000593582 TMTC2Q8N394 836 aa17.74■□□□□ 0.43
TRIM28-203ENST00000593582 NSUN6Q8TEA1 469 aaKnown RBP17.74■□□□□ 0.43
TRIM28-203ENST00000593582 TMEM87BQ96K49 555 aa17.74■□□□□ 0.43
TRIM28-203ENST00000593582 TOX2Q96NM4 488 aa17.74■□□□□ 0.43
TRIM28-203ENST00000593582 MAP3K14Q99558 947 aa17.74■□□□□ 0.43
TRIM28-203ENST00000593582 RIOX1Q9H6W3 641 aa17.74■□□□□ 0.43
TRIM28-203ENST00000593582 PDLIM7Q9NR12 457 aa17.74■□□□□ 0.43
TRIM28-203ENST00000593582 PCDHA1Q9Y5I3 950 aa17.74■□□□□ 0.43
TRIM28-203ENST00000593582 MROH7Q68CQ1 1323 aa17.73■□□□□ 0.43
TRIM28-203ENST00000593582 LCTP09848 1927 aa17.73■□□□□ 0.43
TRIM28-203ENST00000593582 DCDC2CA8MYV0 355 aa17.73■□□□□ 0.43
TRIM28-203ENST00000593582 KIF5BP33176 963 aa17.73■□□□□ 0.43
TRIM28-203ENST00000593582 NFXL1Q6ZNB6 911 aa17.73■□□□□ 0.43
TRIM28-203ENST00000593582 ANKRD33Q7Z3H0 272 aa17.73■□□□□ 0.43
TRIM28-203ENST00000593582 ZNF654Q8IZM8 581 aa17.73■□□□□ 0.43
TRIM28-203ENST00000593582 CTCFLQ8NI51 663 aaPredicted RBP17.73■□□□□ 0.43
TRIM28-203ENST00000593582 SYTL5Q8TDW5 730 aaPredicted RBP17.73■□□□□ 0.43
TRIM28-203ENST00000593582 TBC1D5Q92609 795 aa17.73■□□□□ 0.43
TRIM28-203ENST00000593582 A0A0U1RQG5 324 aaPredicted RBP17.72■□□□□ 0.43
TRIM28-203ENST00000593582 RBM47A0AV96 593 aaKnown RBP17.72■□□□□ 0.43
TRIM28-203ENST00000593582 TRIM43BA6NCK2 446 aa17.72■□□□□ 0.43
TRIM28-203ENST00000593582 CCDC69A6NI79 296 aa17.72■□□□□ 0.43
TRIM28-203ENST00000593582 CABYRO75952 493 aa17.72■□□□□ 0.43
TRIM28-203ENST00000593582 DDAH1O94760 285 aa17.72■□□□□ 0.43
TRIM28-203ENST00000593582 CFBP00751 764 aa17.72■□□□□ 0.43
TRIM28-203ENST00000593582 PPP2R5BQ15173 497 aa17.72■□□□□ 0.43
TRIM28-203ENST00000593582 TMEM63BQ5T3F8 832 aa17.72■□□□□ 0.43
TRIM28-203ENST00000593582 SH3RF1Q7Z6J0 888 aa17.72■□□□□ 0.43
TRIM28-203ENST00000593582 SCFD2Q8WU76 684 aa17.72■□□□□ 0.43
TRIM28-203ENST00000593582 TRIM43Q96BQ3 446 aaPredicted RBP17.72■□□□□ 0.43
TRIM28-203ENST00000593582 PIGSQ96S52 555 aa17.72■□□□□ 0.43
TRIM28-203ENST00000593582 RMDN3Q96TC7 470 aa17.72■□□□□ 0.43
TRIM28-203ENST00000593582 GPHNQ9NQX3 736 aaPredicted RBP17.72■□□□□ 0.43
TRIM28-203ENST00000593582 TMEM39AQ9NV64 488 aa17.72■□□□□ 0.43
TRIM28-203ENST00000593582 LRRC37A2A6NM11 1700 aa17.72■□□□□ 0.43
TRIM28-203ENST00000593582 PNMA6FA0A0J9YX94 578 aa17.71■□□□□ 0.43
TRIM28-203ENST00000593582 SH2B2O14492 632 aaPredicted RBP17.71■□□□□ 0.43
TRIM28-203ENST00000593582 CYTH3O43739 400 aa17.71■□□□□ 0.43
TRIM28-203ENST00000593582 PPP1R11O60927 126 aaPredicted RBP17.71■□□□□ 0.43
TRIM28-203ENST00000593582 PTGS1P23219 599 aa17.71■□□□□ 0.43
TRIM28-203ENST00000593582 LIFRP42702 1097 aa17.71■□□□□ 0.43
TRIM28-203ENST00000593582 ARHGEF16Q5VV41 709 aa17.71■□□□□ 0.43
TRIM28-203ENST00000593582 CXCL17Q6UXB2 119 aa17.71■□□□□ 0.43
TRIM28-203ENST00000593582 TAAR1Q96RJ0 339 aa17.71■□□□□ 0.43
TRIM28-203ENST00000593582 IWS1Q96ST2 819 aa17.71■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms