RNA–Protein interactions for RNA: ENST00000591475.5

VPS4B-206, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 1 (best)

Gene VPS4B, Length 2,008 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-206ENST00000591475 DISC1Q9NRI5 854 aa12.13□□□□□ -0.47
VPS4B-206ENST00000591475 LCMT1Q9UIC8 334 aa12.13□□□□□ -0.47
VPS4B-206ENST00000591475 DDX52Q9Y2R4 599 aaKnown RBP eCLIP12.13□□□□□ -0.47
VPS4B-206ENST00000591475 COL1A1P02452 1464 aaPredicted RBP12.13□□□□□ -0.47
VPS4B-206ENST00000591475 TRIM49BA6NDI0 452 aa12.12□□□□□ -0.47
VPS4B-206ENST00000591475 ENC1O14682 589 aa12.12□□□□□ -0.47
VPS4B-206ENST00000591475 PSMA7O14818 248 aa12.12□□□□□ -0.47
VPS4B-206ENST00000591475 KRT86O43790 486 aa12.12□□□□□ -0.47
VPS4B-206ENST00000591475 C21orf2O43822 256 aa12.12□□□□□ -0.47
VPS4B-206ENST00000591475 PHACTR2O75167 634 aa12.12□□□□□ -0.47
VPS4B-206ENST00000591475 ATP1A1P05023 1023 aaKnown RBP12.12□□□□□ -0.47
VPS4B-206ENST00000591475 MYL1P05976 194 aa12.12□□□□□ -0.47
VPS4B-206ENST00000591475 IL1R1P14778 569 aa12.12□□□□□ -0.47
VPS4B-206ENST00000591475 TNNT3P45378 269 aaPredicted RBP12.12□□□□□ -0.47
VPS4B-206ENST00000591475 SOGA3Q5TF21 947 aa12.12□□□□□ -0.47
VPS4B-206ENST00000591475 C10orf67Q8IYJ2 551 aa12.12□□□□□ -0.47
VPS4B-206ENST00000591475 RTKN2Q8IZC4 609 aa12.12□□□□□ -0.47
VPS4B-206ENST00000591475 BLIDQ8IZY5 108 aa12.12□□□□□ -0.47
VPS4B-206ENST00000591475 JAKMIP2Q96AA8 810 aa12.12□□□□□ -0.47
VPS4B-206ENST00000591475 TRIM47Q96LD4 638 aa12.12□□□□□ -0.47
VPS4B-206ENST00000591475 MMS19Q96T76 1030 aa12.12□□□□□ -0.47
VPS4B-206ENST00000591475 NUP58Q9BVL2 599 aa12.12□□□□□ -0.47
VPS4B-206ENST00000591475 COA1Q9GZY4 146 aa12.12□□□□□ -0.47
VPS4B-206ENST00000591475 FAM204AQ9H8W3 233 aa12.12□□□□□ -0.47
VPS4B-206ENST00000591475 CD209Q9NNX6 404 aa12.12□□□□□ -0.47
VPS4B-206ENST00000591475 ZNHIT6Q9NWK9 470 aaKnown RBP12.12□□□□□ -0.47
VPS4B-206ENST00000591475 ZNF219Q9P2Y4 722 aaPredicted RBP12.12□□□□□ -0.47
VPS4B-206ENST00000591475 HDAC6Q9UBN7 1215 aa12.12□□□□□ -0.47
VPS4B-206ENST00000591475 SLX4Q8IY92 1834 aa12.12□□□□□ -0.47
VPS4B-206ENST00000591475 BAZ2BQ9UIF8 2168 aaKnown RBP12.12□□□□□ -0.47
VPS4B-206ENST00000591475 USP17L12C9JPN9 530 aa12.11□□□□□ -0.47
VPS4B-206ENST00000591475 USP17L21D6R901 530 aa12.11□□□□□ -0.47
VPS4B-206ENST00000591475 IPO7O95373 1038 aaKnown RBP12.11□□□□□ -0.47
VPS4B-206ENST00000591475 KIF5BP33176 963 aa12.11□□□□□ -0.47
VPS4B-206ENST00000591475 MEA1Q16626 185 aa12.11□□□□□ -0.47
VPS4B-206ENST00000591475 WDR59Q6PJI9 974 aa12.11□□□□□ -0.47
VPS4B-206ENST00000591475 DTHD1Q6ZMT9 781 aa12.11□□□□□ -0.47
VPS4B-206ENST00000591475 SUPT20HQ8NEM7 779 aa12.11□□□□□ -0.47
VPS4B-206ENST00000591475 RASSF8Q8NHQ8 419 aa12.11□□□□□ -0.47
VPS4B-206ENST00000591475 WDR66Q8TBY9 1149 aa12.11□□□□□ -0.47
VPS4B-206ENST00000591475 ZBTB9Q96C00 473 aa12.11□□□□□ -0.47
VPS4B-206ENST00000591475 SH3GLB2Q9NR46 395 aa12.11□□□□□ -0.47
VPS4B-206ENST00000591475 KIAA1551Q9HCM1 1747 aa12.11□□□□□ -0.47
VPS4B-206ENST00000591475 RIMBP2O15034 1052 aa12.11□□□□□ -0.47
VPS4B-206ENST00000591475 RNF40O75150 1001 aa12.11□□□□□ -0.47
VPS4B-206ENST00000591475 DALRD3Q5D0E6 543 aaKnown RBP12.11□□□□□ -0.47
VPS4B-206ENST00000591475 CCDC170Q8IYT3 715 aa12.11□□□□□ -0.47
VPS4B-206ENST00000591475 RETREG2Q8NC44 543 aa12.11□□□□□ -0.47
VPS4B-206ENST00000591475 AFAP1L1Q8TED9 768 aa12.11□□□□□ -0.47
VPS4B-206ENST00000591475 EXOC1Q9NV70 894 aa12.11□□□□□ -0.47
VPS4B-206ENST00000591475 RNF216Q9NWF9 866 aaPredicted RBP12.11□□□□□ -0.47
VPS4B-206ENST00000591475 HPCAL4Q9UM19 191 aa12.11□□□□□ -0.47
VPS4B-206ENST00000591475 PCDHA4Q9UN74 947 aa12.11□□□□□ -0.47
VPS4B-206ENST00000591475 CCDC88AQ3V6T2 1871 aa12.1□□□□□ -0.47
VPS4B-206ENST00000591475 MAST2Q6P0Q8 1798 aa12.1□□□□□ -0.47
VPS4B-206ENST00000591475 ANO9A1A5B4 782 aa12.1□□□□□ -0.47
VPS4B-206ENST00000591475 ADAMTS3O15072 1205 aa12.1□□□□□ -0.47
VPS4B-206ENST00000591475 NMT2O60551 498 aa12.1□□□□□ -0.47
VPS4B-206ENST00000591475 RHOBTB3O94955 611 aa12.1□□□□□ -0.47
VPS4B-206ENST00000591475 PMS1P54277 932 aaKnown RBP12.1□□□□□ -0.47
VPS4B-206ENST00000591475 IQCEQ6IPM2 695 aa12.1□□□□□ -0.47
VPS4B-206ENST00000591475 TMED8Q6PL24 325 aaPredicted RBP12.1□□□□□ -0.47
VPS4B-206ENST00000591475 GIMAP8Q8ND71 665 aaPredicted RBP12.1□□□□□ -0.47
VPS4B-206ENST00000591475 CAGE1Q8TC20 777 aa12.1□□□□□ -0.47
VPS4B-206ENST00000591475 DHTKD1Q96HY7 919 aaPredicted RBP12.1□□□□□ -0.47
VPS4B-206ENST00000591475 CAPZA3Q96KX2 299 aa12.1□□□□□ -0.47
VPS4B-206ENST00000591475 CCDC194A0A1B0GVG4 234 aa12.1□□□□□ -0.47
VPS4B-206ENST00000591475 B4DLN1 442 aa12.1□□□□□ -0.47
VPS4B-206ENST00000591475 EIF3CLB5ME19 914 aaKnown RBP12.1□□□□□ -0.47
VPS4B-206ENST00000591475 G3V3G9 751 aa12.1□□□□□ -0.47
VPS4B-206ENST00000591475 TRIM66O15016 1216 aa12.1□□□□□ -0.47
VPS4B-206ENST00000591475 KLRC4O43908 158 aa12.1□□□□□ -0.47
VPS4B-206ENST00000591475 SRGAP2O75044 1071 aa12.1□□□□□ -0.47
VPS4B-206ENST00000591475 SYF2O95926 243 aaKnown RBP12.1□□□□□ -0.47
VPS4B-206ENST00000591475 TRIM21P19474 475 aaKnown RBP12.1□□□□□ -0.47
VPS4B-206ENST00000591475 UBA7P41226 1012 aa12.1□□□□□ -0.47
VPS4B-206ENST00000591475 NAALADL2Q58DX5 795 aa12.1□□□□□ -0.47
VPS4B-206ENST00000591475 FAM47AQ5JRC9 791 aa12.1□□□□□ -0.47
VPS4B-206ENST00000591475 DCAF8Q5TAQ9 597 aa12.1□□□□□ -0.47
VPS4B-206ENST00000591475 SPTY2D1Q68D10 685 aaPredicted RBP12.1□□□□□ -0.47
VPS4B-206ENST00000591475 TTI2Q6NXR4 508 aa12.1□□□□□ -0.47
VPS4B-206ENST00000591475 LRRC31Q6UY01 552 aa12.1□□□□□ -0.47
VPS4B-206ENST00000591475 FAM114A1Q8IWE2 563 aa12.1□□□□□ -0.47
VPS4B-206ENST00000591475 SNED1Q8TER0 1413 aa12.1□□□□□ -0.47
VPS4B-206ENST00000591475 COG1Q8WTW3 980 aa12.1□□□□□ -0.47
VPS4B-206ENST00000591475 CCDC47Q96A33 483 aaKnown RBP12.1□□□□□ -0.47
VPS4B-206ENST00000591475 PSMD1Q99460 953 aa12.1□□□□□ -0.47
VPS4B-206ENST00000591475 EIF3CQ99613 913 aaKnown RBP12.1□□□□□ -0.47
VPS4B-206ENST00000591475 TUBGCP2Q9BSJ2 902 aa12.1□□□□□ -0.47
VPS4B-206ENST00000591475 CRNKL1Q9BZJ0 848 aaKnown RBP12.1□□□□□ -0.47
VPS4B-206ENST00000591475 TTYH3Q9C0H2 523 aa12.1□□□□□ -0.47
VPS4B-206ENST00000591475 PRPF6O94906 941 aaKnown RBP12.09□□□□□ -0.47
VPS4B-206ENST00000591475 VEGFAP15692 232 aaPredicted RBP12.09□□□□□ -0.47
VPS4B-206ENST00000591475 ZBED6P86452 979 aa12.09□□□□□ -0.47
VPS4B-206ENST00000591475 CCDC70Q6NSX1 233 aa12.09□□□□□ -0.47
VPS4B-206ENST00000591475 PODNQ7Z5L7 613 aa12.09□□□□□ -0.47
VPS4B-206ENST00000591475 ZNF384Q8TF68 577 aa12.09□□□□□ -0.47
VPS4B-206ENST00000591475 CRACR2AQ9BSW2 395 aa12.09□□□□□ -0.47
VPS4B-206ENST00000591475 TSGA10Q9BZW7 698 aa12.09□□□□□ -0.47
VPS4B-206ENST00000591475 CCSER1Q9C0I3 900 aa12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms